Fluorine in PDB 8b9i: Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna

All present enzymatic activity of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna:
3.6.4.13;

The structure of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna also contains other interesting chemical elements:

Aluminium	(Al)	1 atom
Magnesium	(Mg)	1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna (pdb code 8b9i). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna, PDB code: 8b9i:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1203 b:29.3 occ:1.00 F1 A:ALF1203 0.0 29.3 1.0 AL A:ALF1203 1.8 28.2 1.0 F4 A:ALF1203 2.5 24.9 1.0 F3 A:ALF1203 2.5 26.6 1.0 NH2 A:ARG768 2.7 35.1 1.0 NH1 A:ARG771 2.7 19.6 1.0 NH2 A:ARG771 3.2 18.8 1.0 O1B A:ADP1201 3.2 26.1 1.0 CB A:THR409 3.2 26.8 1.0 NH1 A:ARG768 3.3 30.2 1.0 CZ A:ARG771 3.3 19.8 1.0 CZ A:ARG768 3.4 33.7 1.0 CG2 A:THR409 3.4 26.6 1.0 F2 A:ALF1203 3.6 28.7 1.0 CA A:THR409 3.6 27.4 1.0 N A:GLY410 3.7 28.1 1.0 C A:THR409 4.0 27.6 1.0 OE1 A:GLN764 4.0 27.1 1.0 N A:SER723 4.3 29.6 1.0 OG1 A:THR409 4.5 27.3 1.0 OE1 A:GLU508 4.5 29.0 1.0 PB A:ADP1201 4.5 28.6 1.0 NE A:ARG768 4.6 38.0 1.0 NE A:ARG771 4.6 20.3 1.0 CA A:GLY410 4.7 28.8 1.0 O A:GLY767 4.7 27.4 1.0 CA A:SER723 4.8 31.7 1.0 O1A A:ADP1201 4.9 30.7 1.0 O3B A:ADP1201 4.9 27.4 1.0 N A:THR409 4.9 28.5 1.0 CD A:GLN764 5.0 28.0 1.0

Fluorine binding site 2 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1203 b:28.7 occ:1.00 F2 A:ALF1203 0.0 28.7 1.0 AL A:ALF1203 1.8 28.2 1.0 O A:HOH1301 2.1 21.2 1.0 O A:HOH1302 2.1 26.6 1.0 O3B A:ADP1201 2.5 27.4 1.0 F3 A:ALF1203 2.5 26.6 1.0 F4 A:ALF1203 2.5 24.9 1.0 O1B A:ADP1201 3.1 26.1 1.0 PB A:ADP1201 3.2 28.6 1.0 OE1 A:GLU508 3.4 29.0 1.0 OD2 A:ASP507 3.5 31.0 1.0 F1 A:ALF1203 3.6 29.3 1.0 CD A:GLU508 3.6 29.4 1.0 OE2 A:GLU508 3.7 31.9 1.0 MG A:MG1202 3.7 27.5 1.0 OD1 A:ASP507 3.8 32.3 1.0 O2B A:ADP1201 4.0 27.0 1.0 CA A:SER723 4.1 31.7 1.0 CG A:ASP507 4.1 31.3 1.0 CE A:LYS413 4.4 29.7 1.0 N A:SER723 4.4 29.6 1.0 OG A:SER723 4.5 31.8 1.0 CG A:GLU508 4.5 27.9 1.0 O3A A:ADP1201 4.6 31.4 1.0 NZ A:LYS413 4.6 31.6 1.0 NH2 A:ARG771 4.6 18.8 1.0 OG1 A:THR414 4.7 26.9 1.0 CB A:SER723 4.7 30.9 1.0 O1A A:ADP1201 4.8 30.7 1.0

Fluorine binding site 3 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1203 b:26.6 occ:1.00 F3 A:ALF1203 0.0 26.6 1.0 AL A:ALF1203 1.8 28.2 1.0 F2 A:ALF1203 2.5 28.7 1.0 F1 A:ALF1203 2.5 29.3 1.0 OE1 A:GLU508 3.4 29.0 1.0 OE2 A:GLU508 3.4 31.9 1.0 O1B A:ADP1201 3.5 26.1 1.0 F4 A:ALF1203 3.6 24.9 1.0 CG2 A:THR409 3.6 26.6 1.0 CD A:GLU508 3.7 29.4 1.0 NZ A:LYS413 3.8 31.6 1.0 CA A:THR409 3.9 27.4 1.0 NE2 A:GLN764 3.9 27.7 1.0 OE1 A:GLN764 3.9 27.1 1.0 O A:HOH1301 4.0 21.2 1.0 CB A:THR409 4.1 26.8 1.0 CB A:ALA540 4.1 28.1 1.0 CE A:LYS413 4.1 29.7 1.0 PB A:ADP1201 4.1 28.6 1.0 O3B A:ADP1201 4.3 27.4 1.0 O2B A:ADP1201 4.3 27.0 1.0 CD A:GLN764 4.4 28.0 1.0 NH2 A:ARG768 4.4 35.1 1.0 N A:GLY410 4.5 28.1 1.0 O A:HOH1302 4.6 26.6 1.0 N A:ALA540 4.7 28.1 1.0 N A:THR409 4.8 28.5 1.0 C A:THR409 4.8 27.6 1.0

Fluorine binding site 4 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1203 b:24.9 occ:1.00 F4 A:ALF1203 0.0 24.9 1.0 AL A:ALF1203 1.8 28.2 1.0 NH2 A:ARG771 2.3 18.8 1.0 F1 A:ALF1203 2.5 29.3 1.0 F2 A:ALF1203 2.5 28.7 1.0 O1B A:ADP1201 2.8 26.1 1.0 O A:HOH1302 3.1 26.6 1.0 CA A:SER723 3.2 31.7 1.0 MG A:MG1202 3.3 27.5 1.0 CZ A:ARG771 3.4 19.8 1.0 N A:SER723 3.4 29.6 1.0 O1A A:ADP1201 3.4 30.7 1.0 O3B A:ADP1201 3.5 27.4 1.0 NH1 A:ARG768 3.5 30.2 1.0 F3 A:ALF1203 3.6 26.6 1.0 C A:SER723 3.6 28.6 1.0 PB A:ADP1201 3.7 28.6 1.0 NH1 A:ARG771 3.7 19.6 1.0 O A:SER723 4.0 31.1 1.0 NH2 A:ARG768 4.2 35.1 1.0 N A:ILE724 4.2 28.5 1.0 CZ A:ARG768 4.3 33.7 1.0 O A:HOH1301 4.4 21.2 1.0 PA A:ADP1201 4.4 30.4 1.0 CB A:SER723 4.4 30.9 1.0 O3A A:ADP1201 4.5 31.4 1.0 OE1 A:GLU508 4.5 29.0 1.0 NE A:ARG771 4.5 20.3 1.0 C A:THR722 4.7 31.2 1.0 N A:GLY410 4.7 28.1 1.0 OG A:SER723 4.8 31.8 1.0 O A:ILE724 4.9 29.5 1.0 O2B A:ADP1201 4.9 27.0 1.0 O2A A:ADP1201 5.0 27.9 1.0

P.K.A.Jagtap, J.Hennig. Cryo-Em Structure of Mle in Complex with Adp:ALF4 and Uuc Rna To Be Published.