Fluorine in PDB 8b9j: Cryo-Em Structure of Mle in Complex with Adp:ALF4

Enzymatic activity of Cryo-Em Structure of Mle in Complex with Adp:ALF4

All present enzymatic activity of Cryo-Em Structure of Mle in Complex with Adp:ALF4:
3.6.4.13;

Other elements in 8b9j:

The structure of Cryo-Em Structure of Mle in Complex with Adp:ALF4 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 (pdb code 8b9j). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of Mle in Complex with Adp:ALF4, PDB code: 8b9j:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8b9j

Go back to Fluorine Binding Sites List in 8b9j
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:29.9
occ:1.00
 F1 A:ALF1202 0.0 29.9 1.0
AL A:ALF1202 1.8 29.9 1.0
O A:THR722 2.3 36.8 1.0
OE2 A:GLU508 2.5 27.8 1.0
F4 A:ALF1202 2.5 29.9 1.0
F3 A:ALF1202 2.5 29.9 1.0
OG1 A:THR722 3.0 36.8 1.0
C A:THR722 3.0 36.8 1.0
CD A:GLU508 3.0 27.8 1.0
OE1 A:GLU508 3.2 27.8 1.0
F2 A:ALF1202 3.6 29.9 1.0
CG2 A:THR409 3.6 40.8 1.0
CA A:THR722 3.7 36.8 1.0
N A:SER723 3.9 41.2 1.0
CB A:THR722 3.9 36.8 1.0
O3B A:ADP1201 4.0 46.7 1.0
CB A:THR409 4.0 40.8 1.0
O2B A:ADP1201 4.1 46.7 1.0
CG A:GLU508 4.2 27.8 1.0
CA A:SER723 4.4 41.2 1.0
CA A:THR409 4.5 40.8 1.0
NZ A:LYS413 4.6 27.8 1.0
O A:SER723 4.6 41.2 1.0
PB A:ADP1201 4.6 46.7 1.0
CG2 A:THR722 4.7 36.8 1.0
C A:SER723 4.9 41.2 1.0

Fluorine binding site 2 out of 4 in 8b9j

Go back to Fluorine Binding Sites List in 8b9j
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:29.9
occ:1.00
 F2 A:ALF1202 0.0 29.9 1.0
AL A:ALF1202 1.8 29.9 1.0
NZ A:LYS413 2.4 27.8 1.0
F4 A:ALF1202 2.5 29.9 1.0
F3 A:ALF1202 2.5 29.9 1.0
O2B A:ADP1201 2.9 46.7 1.0
CE A:LYS413 3.2 27.8 1.0
PB A:ADP1201 3.2 46.7 1.0
O1B A:ADP1201 3.3 46.7 1.0
CB A:LYS413 3.4 27.8 1.0
O3B A:ADP1201 3.5 46.7 1.0
OE2 A:GLU508 3.5 27.8 1.0
F1 A:ALF1202 3.6 29.9 1.0
N A:THR414 3.8 27.8 1.0
CG2 A:THR414 3.8 27.8 1.0
CG A:LYS413 3.9 27.8 1.0
N A:LYS413 4.1 27.8 1.0
CD A:LYS413 4.2 27.8 1.0
CA A:LYS413 4.2 27.8 1.0
OD1 A:ASP507 4.3 27.8 1.0
C A:LYS413 4.5 27.8 1.0
CB A:THR414 4.5 27.8 1.0
CD A:GLU508 4.6 27.8 1.0
OD2 A:ASP507 4.7 27.8 1.0
CA A:THR414 4.8 27.8 1.0
O3A A:ADP1201 4.8 46.7 1.0
CG A:ASP507 4.9 27.8 1.0
N A:GLY410 5.0 35.2 1.0

Fluorine binding site 3 out of 4 in 8b9j

Go back to Fluorine Binding Sites List in 8b9j
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:29.9
occ:1.00
 F3 A:ALF1202 0.0 29.9 1.0
AL A:ALF1202 1.8 29.9 1.0
O3B A:ADP1201 2.2 46.7 1.0
F1 A:ALF1202 2.5 29.9 1.0
F2 A:ALF1202 2.5 29.9 1.0
OE2 A:GLU508 2.7 27.8 1.0
PB A:ADP1201 3.1 46.7 1.0
CG2 A:THR414 3.3 27.8 1.0
O2B A:ADP1201 3.4 46.7 1.0
F4 A:ALF1202 3.6 29.9 1.0
O1B A:ADP1201 3.8 46.7 1.0
OD2 A:ASP507 3.8 27.8 1.0
CD A:GLU508 3.8 27.8 1.0
O A:THR722 4.0 36.8 1.0
OD1 A:ASP507 4.3 27.8 1.0
CB A:THR414 4.3 27.8 1.0
CG A:ASP507 4.5 27.8 1.0
O3A A:ADP1201 4.5 46.7 1.0
OE1 A:GLU508 4.6 27.8 1.0
CG A:GLU508 4.7 27.8 1.0
NZ A:LYS413 4.7 27.8 1.0
C A:THR722 4.8 36.8 1.0
O A:SER723 4.9 41.2 1.0
N A:THR414 4.9 27.8 1.0

Fluorine binding site 4 out of 4 in 8b9j

Go back to Fluorine Binding Sites List in 8b9j
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:29.9
occ:1.00
 F4 A:ALF1202 0.0 29.9 1.0
AL A:ALF1202 1.8 29.9 1.0
NZ A:LYS413 2.2 27.8 1.0
F1 A:ALF1202 2.5 29.9 1.0
F2 A:ALF1202 2.5 29.9 1.0
OE2 A:GLU508 3.3 27.8 1.0
CE A:LYS413 3.4 27.8 1.0
CG2 A:THR409 3.5 40.8 1.0
CA A:THR409 3.6 40.8 1.0
F3 A:ALF1202 3.6 29.9 1.0
O2B A:ADP1201 3.7 46.7 1.0
OE1 A:GLU508 3.8 27.8 1.0
CB A:THR409 3.9 40.8 1.0
CD A:GLU508 4.0 27.8 1.0
OG1 A:THR722 4.1 36.8 1.0
N A:THR409 4.2 40.8 1.0
CB A:ALA540 4.2 38.8 1.0
O A:ASN408 4.3 37.3 1.0
C A:ASN408 4.5 37.3 1.0
N A:GLY410 4.6 35.2 1.0
CD A:LYS413 4.6 27.8 1.0
C A:THR409 4.6 40.8 1.0
O A:THR722 4.7 36.8 1.0
PB A:ADP1201 4.7 46.7 1.0
O A:GLY407 4.7 30.2 1.0
O3B A:ADP1201 4.8 46.7 1.0

Reference:

P.K.A.Jagtap, J.Hennig. Cryo-Em Structure of Mle in Complex with Adp:ALF4 To Be Published.
Page generated: Fri Aug 2 16:46:02 2024

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