Fluorine in PDB 8b9k: Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna

All present enzymatic activity of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna:
3.6.4.13;

The structure of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna also contains other interesting chemical elements:

Aluminium

(Al)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna (pdb code 8b9k). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna, PDB code: 8b9k:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1202 b:20.0 occ:1.00 F1 A:ALF1202 0.0 20.0 1.0 AL A:ALF1202 1.8 20.0 1.0 O3B A:ADP1201 2.2 20.0 1.0 OD2 A:ASP507 2.2 68.3 1.0 F4 A:ALF1202 2.5 20.0 1.0 OG1 A:THR414 2.5 68.3 1.0 F3 A:ALF1202 2.5 20.0 1.0 CG A:ASP507 3.1 68.3 1.0 OD1 A:ASP507 3.3 68.3 1.0 CB A:THR414 3.6 68.3 1.0 F2 A:ALF1202 3.6 20.0 1.0 PB A:ADP1201 3.6 20.0 1.0 O1B A:ADP1201 4.1 20.0 1.0 O1A A:ADP1201 4.1 20.0 1.0 CG2 A:THR414 4.3 68.3 1.0 O3A A:ADP1201 4.4 20.0 1.0 N A:GLU508 4.5 68.3 1.0 CB A:GLU508 4.5 68.3 1.0 CB A:ASP507 4.5 68.3 1.0 PA A:ADP1201 4.6 20.0 1.0 O2B A:ADP1201 4.7 20.0 1.0 CE A:MET538 4.7 68.3 1.0 NE2 A:GLN440 4.7 68.3 1.0 O2A A:ADP1201 4.8 20.0 1.0 CA A:THR414 4.8 68.3 1.0 CA A:GLU508 4.9 68.3 1.0 N A:THR414 5.0 68.3 1.0

Fluorine binding site 2 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1202 b:20.0 occ:1.00 F2 A:ALF1202 0.0 20.0 1.0 AL A:ALF1202 1.8 20.0 1.0 F3 A:ALF1202 2.5 20.0 1.0 F4 A:ALF1202 2.5 20.0 1.0 CB A:GLU508 3.1 68.3 1.0 CB A:THR722 3.2 93.6 1.0 CG2 A:THR722 3.6 93.6 1.0 F1 A:ALF1202 3.6 20.0 1.0 NE2 A:HIS510 3.6 68.3 1.0 CE1 A:HIS510 3.7 68.3 1.0 OG1 A:THR722 3.8 93.6 1.0 N A:SER723 3.9 133.7 1.0 O3B A:ADP1201 4.0 20.0 1.0 CA A:THR722 4.4 93.6 1.0 CA A:GLU508 4.4 68.3 1.0 OD2 A:ASP507 4.4 68.3 1.0 C A:THR722 4.7 93.6 1.0 CA A:SER723 4.8 133.7 1.0 CD2 A:HIS510 4.9 68.3 1.0 OG A:SER723 4.9 133.7 1.0 ND1 A:HIS510 4.9 68.3 1.0 N A:GLU508 5.0 68.3 1.0

Fluorine binding site 3 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1202 b:20.0 occ:1.00 F3 A:ALF1202 0.0 20.0 1.0 AL A:ALF1202 1.8 20.0 1.0 O3B A:ADP1201 2.3 20.0 1.0 F2 A:ALF1202 2.5 20.0 1.0 F1 A:ALF1202 2.5 20.0 1.0 PB A:ADP1201 3.0 20.0 1.0 O2B A:ADP1201 3.4 20.0 1.0 O1B A:ADP1201 3.4 20.0 1.0 F4 A:ALF1202 3.6 20.0 1.0 CB A:GLU508 3.9 68.3 1.0 OD2 A:ASP507 4.0 68.3 1.0 NE2 A:HIS510 4.3 68.3 1.0 CB A:ALA540 4.4 68.3 1.0 O3A A:ADP1201 4.5 20.0 1.0 O A:SER539 4.5 68.3 1.0 CA A:GLU508 4.5 68.3 1.0 OG1 A:THR414 4.6 68.3 1.0 C A:SER539 4.7 68.3 1.0 N A:GLU508 4.8 68.3 1.0 O2A A:ADP1201 4.8 20.0 1.0 N A:ALA540 4.8 68.3 1.0 CA A:ALA540 4.9 68.3 1.0 CG A:ASP507 5.0 68.3 1.0

Fluorine binding site 4 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1202 b:20.0 occ:1.00 F4 A:ALF1202 0.0 20.0 1.0 AL A:ALF1202 1.8 20.0 1.0 F1 A:ALF1202 2.5 20.0 1.0 F2 A:ALF1202 2.5 20.0 1.0 OD2 A:ASP507 2.9 68.3 1.0 F3 A:ALF1202 3.6 20.0 1.0 CB A:GLU508 3.8 68.3 1.0 OG A:SER723 3.9 133.7 1.0 N A:SER723 4.0 133.7 1.0 CA A:SER723 4.0 133.7 1.0 O3B A:ADP1201 4.0 20.0 1.0 CG A:ASP507 4.1 68.3 1.0 CB A:SER723 4.5 133.7 1.0 NE2 A:GLN440 4.6 68.3 1.0 N A:GLU508 4.6 68.3 1.0 OG1 A:THR414 4.8 68.3 1.0 CB A:THR722 4.8 93.6 1.0 CA A:GLU508 4.8 68.3 1.0 OD1 A:ASP507 4.9 68.3 1.0

P.K.A.Jagtap, J.Hennig. Cryo-Em Structure of Mle in Complex with Adp:ALF4 and SL7MODUUC Rna To Be Published.