Fluorine in PDB 8bos: Transition State Analogue Complex of Small G Protein and Its Gap Effector

Enzymatic activity of Transition State Analogue Complex of Small G Protein and Its Gap Effector

All present enzymatic activity of Transition State Analogue Complex of Small G Protein and Its Gap Effector:
3.6.5.2;

Protein crystallography data

The structure of Transition State Analogue Complex of Small G Protein and Its Gap Effector, PDB code: 8bos was solved by P.Baumann, Y.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.66 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 71.832, 41.558, 89.674, 90, 109.25, 90
R / Rfree (%) 19.8 / 28

Other elements in 8bos:

The structure of Transition State Analogue Complex of Small G Protein and Its Gap Effector also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Transition State Analogue Complex of Small G Protein and Its Gap Effector (pdb code 8bos). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Transition State Analogue Complex of Small G Protein and Its Gap Effector, PDB code: 8bos:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8bos

Go back to Fluorine Binding Sites List in 8bos
Fluorine binding site 1 out of 3 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
R:F202

b:25.2
occ:1.00
F1 R:MGF202 0.0 25.2 1.0
MG R:MGF202 2.0 25.5 1.0
NH1 G:ARG789 2.1 29.1 1.0
NE2 R:GLN61 2.5 28.3 1.0
O3B R:GDP201 2.7 29.3 1.0
O R:HOH311 2.8 18.2 1.0
CG G:ARG789 3.0 35.4 1.0
CD G:ARG789 3.1 30.8 1.0
CZ G:ARG789 3.2 32.1 1.0
F3 R:MGF202 3.5 24.1 1.0
F2 R:MGF202 3.5 23.0 1.0
N R:GLY13 3.5 28.0 1.0
CA R:GLY12 3.5 30.8 1.0
CD R:GLN61 3.5 26.6 1.0
NE G:ARG789 3.5 31.6 1.0
OE1 R:GLN61 3.8 28.2 1.0
C R:GLY12 3.9 29.3 1.0
CB R:PRO34 3.9 27.1 1.0
CA R:PRO34 4.2 28.2 1.0
PB R:GDP201 4.2 29.7 1.0
NH2 G:ARG789 4.3 35.1 1.0
O G:ARG789 4.4 29.8 1.0
CA R:GLY13 4.4 27.4 1.0
CB G:ARG789 4.5 34.0 1.0
CG R:PRO34 4.6 29.0 1.0
N R:THR35 4.6 24.9 1.0
CG R:GLN61 4.9 24.8 1.0
O R:GLY12 4.9 25.5 1.0
N R:GLY12 4.9 30.8 1.0
O3A R:GDP201 4.9 27.2 1.0
CA G:ARG789 4.9 33.2 1.0
O1B R:GDP201 5.0 26.0 1.0
C R:PRO34 5.0 28.5 1.0

Fluorine binding site 2 out of 3 in 8bos

Go back to Fluorine Binding Sites List in 8bos
Fluorine binding site 2 out of 3 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
R:F202

b:23.0
occ:1.00
F2 R:MGF202 0.0 23.0 1.0
MG R:MG203 1.9 31.6 1.0
MG R:MGF202 1.9 25.5 1.0
O R:HOH302 2.4 29.5 1.0
OG1 R:THR35 2.5 22.6 1.0
O R:HOH307 2.7 24.4 1.0
O3B R:GDP201 2.7 29.3 1.0
O R:HOH311 2.7 18.2 1.0
N R:THR35 2.8 24.9 1.0
O1B R:GDP201 2.9 26.0 1.0
CB R:THR35 2.9 24.4 1.0
F3 R:MGF202 3.3 24.1 1.0
PB R:GDP201 3.4 29.7 1.0
CA R:THR35 3.4 25.3 1.0
F1 R:MGF202 3.5 25.2 1.0
NH1 G:ARG789 3.5 29.1 1.0
C R:PRO34 3.8 28.5 1.0
OG R:SER17 3.8 34.6 1.0
CA R:PRO34 3.9 28.2 1.0
O R:THR58 3.9 36.4 1.0
O R:THR35 4.1 26.7 1.0
C R:THR35 4.2 26.3 1.0
CG2 R:THR35 4.4 24.8 1.0
O2B R:GDP201 4.5 25.5 1.0
O3A R:GDP201 4.5 27.2 1.0
O1A R:GDP201 4.5 30.9 1.0
O R:ASP33 4.6 32.5 1.0
NZ R:LYS16 4.6 25.2 1.0
CB R:PRO34 4.7 27.1 1.0
CZ G:ARG789 4.8 32.1 1.0
OD1 R:ASP57 4.8 38.5 1.0
CA R:ALA59 4.8 30.3 1.0
C R:THR58 4.9 33.5 1.0
CE R:LYS16 4.9 25.2 1.0
O R:PRO34 4.9 28.4 1.0

Fluorine binding site 3 out of 3 in 8bos

Go back to Fluorine Binding Sites List in 8bos
Fluorine binding site 3 out of 3 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
R:F202

b:24.1
occ:1.00
F3 R:MGF202 0.0 24.1 1.0
MG R:MGF202 2.0 25.5 1.0
NZ R:LYS16 2.5 25.2 1.0
N R:GLY60 2.7 28.5 1.0
O R:HOH311 3.0 18.2 1.0
O3B R:GDP201 3.1 29.3 1.0
CE R:LYS16 3.2 25.2 1.0
F2 R:MGF202 3.3 23.0 1.0
F1 R:MGF202 3.5 25.2 1.0
O R:THR58 3.5 36.4 1.0
CA R:ALA59 3.5 30.3 1.0
CA R:GLY60 3.5 28.3 1.0
C R:ALA59 3.5 28.3 1.0
CA R:GLY12 3.5 30.8 1.0
O R:HOH302 3.6 29.5 1.0
O R:ALA11 3.9 29.4 1.0
OE1 R:GLN61 4.0 28.2 1.0
PB R:GDP201 4.1 29.7 1.0
N R:GLY12 4.1 30.8 1.0
O2B R:GDP201 4.1 25.5 1.0
NE2 R:GLN61 4.2 28.3 1.0
C R:ALA11 4.2 31.5 1.0
C R:THR58 4.3 33.5 1.0
N R:ALA59 4.3 32.6 1.0
O R:GLY10 4.3 39.8 1.0
C R:GLY60 4.4 30.1 1.0
CD R:GLN61 4.4 26.6 1.0
N R:GLY13 4.4 28.0 1.0
C R:GLY12 4.5 29.3 1.0
N R:GLN61 4.6 29.8 1.0
O1B R:GDP201 4.6 26.0 1.0
CB R:ALA59 4.6 29.4 1.0
MG R:MG203 4.6 31.6 1.0
CD R:LYS16 4.6 25.7 1.0
O R:ALA59 4.7 26.8 1.0
NH1 G:ARG789 5.0 29.1 1.0

Reference:

P.Baumann, Y.Jin. A Small G Protein with MGF3 Tsa Complex To Be Published.
Page generated: Fri Aug 2 16:52:33 2024

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