Fluorine in PDB 8bsp: Notum Inhibitor ARUK3006560
Enzymatic activity of Notum Inhibitor ARUK3006560
All present enzymatic activity of Notum Inhibitor ARUK3006560:
3.1.1.98;
Protein crystallography data
The structure of Notum Inhibitor ARUK3006560, PDB code: 8bsp
was solved by
Y.Zhao,
E.Y.Jones,
P.Fish,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.17 /
1.55
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.962,
71.771,
78.341,
90,
90,
90
|
R / Rfree (%)
|
18.8 /
20.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Notum Inhibitor ARUK3006560
(pdb code 8bsp). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Notum Inhibitor ARUK3006560, PDB code: 8bsp:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 8bsp
Go back to
Fluorine Binding Sites List in 8bsp
Fluorine binding site 1 out
of 3 in the Notum Inhibitor ARUK3006560
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Notum Inhibitor ARUK3006560 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1605
b:49.5
occ:1.00
|
F19
|
A:RD91605
|
0.0
|
49.5
|
1.0
|
C18
|
A:RD91605
|
1.4
|
51.3
|
1.0
|
F20
|
A:RD91605
|
2.2
|
52.6
|
1.0
|
F21
|
A:RD91605
|
2.3
|
64.5
|
1.0
|
C17
|
A:RD91605
|
2.4
|
47.2
|
1.0
|
C12
|
A:RD91605
|
2.9
|
46.6
|
1.0
|
C11
|
A:RD91605
|
2.9
|
44.2
|
1.0
|
CB
|
A:PRO287
|
3.1
|
42.4
|
1.0
|
CG
|
A:PRO287
|
3.4
|
46.2
|
1.0
|
C16
|
A:RD91605
|
3.7
|
45.9
|
1.0
|
CB
|
A:PHE268
|
3.7
|
19.6
|
1.0
|
CE1
|
A:PHE320
|
3.8
|
19.8
|
1.0
|
CG
|
A:PHE268
|
3.9
|
21.9
|
1.0
|
CZ
|
A:PHE320
|
4.1
|
23.9
|
1.0
|
CD2
|
A:PHE268
|
4.2
|
24.0
|
1.0
|
C13
|
A:RD91605
|
4.3
|
47.5
|
1.0
|
C10
|
A:RD91605
|
4.4
|
45.1
|
1.0
|
CA
|
A:PRO287
|
4.6
|
46.2
|
1.0
|
CD1
|
A:PHE268
|
4.6
|
28.0
|
1.0
|
CD
|
A:PRO287
|
4.7
|
47.5
|
1.0
|
CD1
|
A:PHE320
|
4.8
|
20.4
|
1.0
|
C15
|
A:RD91605
|
4.8
|
44.4
|
1.0
|
CG2
|
A:VAL346
|
4.9
|
27.7
|
1.0
|
CE2
|
A:PHE268
|
5.0
|
25.7
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 8bsp
Go back to
Fluorine Binding Sites List in 8bsp
Fluorine binding site 2 out
of 3 in the Notum Inhibitor ARUK3006560
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Notum Inhibitor ARUK3006560 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1605
b:52.6
occ:1.00
|
F20
|
A:RD91605
|
0.0
|
52.6
|
1.0
|
C18
|
A:RD91605
|
1.4
|
51.3
|
1.0
|
F21
|
A:RD91605
|
2.2
|
64.5
|
1.0
|
F19
|
A:RD91605
|
2.2
|
49.5
|
1.0
|
C17
|
A:RD91605
|
2.3
|
47.2
|
1.0
|
C16
|
A:RD91605
|
2.8
|
45.9
|
1.0
|
CE1
|
A:PHE320
|
3.0
|
19.8
|
1.0
|
CZ
|
A:PHE320
|
3.3
|
23.9
|
1.0
|
CB
|
A:PHE268
|
3.4
|
19.6
|
1.0
|
C12
|
A:RD91605
|
3.5
|
46.6
|
1.0
|
CD1
|
A:PHE320
|
3.5
|
20.4
|
1.0
|
CD2
|
A:PHE268
|
3.7
|
24.0
|
1.0
|
CG
|
A:PHE268
|
3.9
|
21.9
|
1.0
|
O
|
A:PHE319
|
3.9
|
19.9
|
1.0
|
CE2
|
A:PHE320
|
4.0
|
23.5
|
1.0
|
C15
|
A:RD91605
|
4.1
|
44.4
|
1.0
|
CG
|
A:PHE320
|
4.2
|
18.2
|
1.0
|
O
|
A:HOH1730
|
4.2
|
17.9
|
1.0
|
C11
|
A:RD91605
|
4.3
|
44.2
|
1.0
|
CD2
|
A:PHE320
|
4.3
|
21.0
|
1.0
|
C13
|
A:RD91605
|
4.6
|
47.5
|
1.0
|
CB
|
A:PRO287
|
4.6
|
42.4
|
1.0
|
C
|
A:PHE319
|
4.6
|
18.5
|
1.0
|
CA
|
A:PHE268
|
4.7
|
17.1
|
1.0
|
CE2
|
A:PHE268
|
4.8
|
25.7
|
1.0
|
C14
|
A:RD91605
|
4.8
|
45.3
|
1.0
|
CA
|
A:PHE320
|
4.9
|
16.0
|
1.0
|
CB
|
A:PHE319
|
4.9
|
17.3
|
1.0
|
C
|
A:PHE268
|
5.0
|
16.5
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 8bsp
Go back to
Fluorine Binding Sites List in 8bsp
Fluorine binding site 3 out
of 3 in the Notum Inhibitor ARUK3006560
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Notum Inhibitor ARUK3006560 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1605
b:64.5
occ:1.00
|
F21
|
A:RD91605
|
0.0
|
64.5
|
1.0
|
C18
|
A:RD91605
|
1.4
|
51.3
|
1.0
|
F20
|
A:RD91605
|
2.2
|
52.6
|
1.0
|
F19
|
A:RD91605
|
2.3
|
49.5
|
1.0
|
C17
|
A:RD91605
|
2.3
|
47.2
|
1.0
|
C16
|
A:RD91605
|
2.9
|
45.9
|
1.0
|
CB
|
A:PRO287
|
3.0
|
42.4
|
1.0
|
CG1
|
A:ILE291
|
3.4
|
31.1
|
1.0
|
CZ
|
A:PHE320
|
3.4
|
23.9
|
1.0
|
C12
|
A:RD91605
|
3.5
|
46.6
|
1.0
|
CE1
|
A:PHE320
|
3.9
|
19.8
|
1.0
|
CD1
|
A:ILE291
|
4.0
|
36.2
|
1.0
|
O
|
A:PRO287
|
4.0
|
33.6
|
1.0
|
CA
|
A:PRO287
|
4.0
|
46.2
|
1.0
|
CE2
|
A:PHE320
|
4.1
|
23.5
|
1.0
|
C
|
A:PRO287
|
4.1
|
36.7
|
1.0
|
CG
|
A:PRO287
|
4.2
|
46.2
|
1.0
|
C15
|
A:RD91605
|
4.2
|
44.4
|
1.0
|
C11
|
A:RD91605
|
4.2
|
44.2
|
1.0
|
CB
|
A:ILE291
|
4.6
|
26.5
|
1.0
|
C13
|
A:RD91605
|
4.6
|
47.5
|
1.0
|
OH
|
A:TYR129
|
4.6
|
39.1
|
1.0
|
CD1
|
A:PHE320
|
4.8
|
20.4
|
1.0
|
N
|
A:THR288
|
4.8
|
37.2
|
1.0
|
C14
|
A:RD91605
|
4.9
|
45.3
|
1.0
|
CD2
|
A:PHE320
|
5.0
|
21.0
|
1.0
|
|
Reference:
Y.Zhao,
E.Y.Jones,
P.Fish.
Notum Inhibitor To Be Published.
Page generated: Fri Aug 2 16:53:00 2024
|