Fluorine in PDB 8bsq: Notum Inhibitor ARUK3006561
Enzymatic activity of Notum Inhibitor ARUK3006561
All present enzymatic activity of Notum Inhibitor ARUK3006561:
3.1.1.98;
Protein crystallography data
The structure of Notum Inhibitor ARUK3006561, PDB code: 8bsq
was solved by
Y.Zhao,
E.Y.Jones,
P.Fish,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.73 /
1.45
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
60.076,
71.795,
78.447,
90,
90,
90
|
R / Rfree (%)
|
19.3 /
20
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Notum Inhibitor ARUK3006561
(pdb code 8bsq). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Notum Inhibitor ARUK3006561, PDB code: 8bsq:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 8bsq
Go back to
Fluorine Binding Sites List in 8bsq
Fluorine binding site 1 out
of 3 in the Notum Inhibitor ARUK3006561
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Notum Inhibitor ARUK3006561 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1605
b:56.5
occ:1.00
|
F20
|
A:RDO1605
|
0.0
|
56.5
|
1.0
|
C19
|
A:RDO1605
|
1.4
|
44.5
|
1.0
|
F21
|
A:RDO1605
|
2.2
|
39.9
|
1.0
|
F22
|
A:RDO1605
|
2.2
|
43.6
|
1.0
|
C18
|
A:RDO1605
|
2.3
|
41.3
|
1.0
|
CB
|
A:PRO287
|
2.9
|
44.9
|
1.0
|
CD1
|
A:ILE291
|
2.9
|
33.2
|
1.0
|
C17
|
A:RDO1605
|
3.0
|
37.4
|
1.0
|
C13
|
A:RDO1605
|
3.3
|
44.5
|
1.0
|
CA
|
A:PRO287
|
3.6
|
46.4
|
1.0
|
CG1
|
A:ILE291
|
3.8
|
29.1
|
1.0
|
C12
|
A:RDO1605
|
3.9
|
41.1
|
1.0
|
CZ
|
A:PHE320
|
4.0
|
21.7
|
1.0
|
O
|
A:PRO287
|
4.0
|
38.5
|
1.0
|
C
|
A:PRO287
|
4.0
|
39.9
|
1.0
|
CG
|
A:PRO287
|
4.2
|
46.0
|
1.0
|
OH
|
A:TYR129
|
4.2
|
35.5
|
1.0
|
C16
|
A:RDO1605
|
4.2
|
41.7
|
1.0
|
CE1
|
A:PHE320
|
4.4
|
21.1
|
1.0
|
C14
|
A:RDO1605
|
4.4
|
44.2
|
1.0
|
CE2
|
A:PHE320
|
4.7
|
21.9
|
1.0
|
CE2
|
A:TYR129
|
4.8
|
28.5
|
1.0
|
C15
|
A:RDO1605
|
4.8
|
40.1
|
1.0
|
CZ
|
A:TYR129
|
4.9
|
31.5
|
1.0
|
N
|
A:PRO287
|
4.9
|
49.1
|
1.0
|
CB
|
A:ILE291
|
5.0
|
26.6
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 8bsq
Go back to
Fluorine Binding Sites List in 8bsq
Fluorine binding site 2 out
of 3 in the Notum Inhibitor ARUK3006561
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Notum Inhibitor ARUK3006561 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1605
b:39.9
occ:1.00
|
F21
|
A:RDO1605
|
0.0
|
39.9
|
1.0
|
C19
|
A:RDO1605
|
1.4
|
44.5
|
1.0
|
F20
|
A:RDO1605
|
2.2
|
56.5
|
1.0
|
F22
|
A:RDO1605
|
2.2
|
43.6
|
1.0
|
C18
|
A:RDO1605
|
2.4
|
41.3
|
1.0
|
C13
|
A:RDO1605
|
2.9
|
44.5
|
1.0
|
C12
|
A:RDO1605
|
3.0
|
41.1
|
1.0
|
CB
|
A:PRO287
|
3.2
|
44.9
|
1.0
|
CB
|
A:PHE268
|
3.5
|
18.7
|
1.0
|
C17
|
A:RDO1605
|
3.7
|
37.4
|
1.0
|
CG
|
A:PHE268
|
3.7
|
19.6
|
1.0
|
CG
|
A:PRO287
|
3.7
|
46.0
|
1.0
|
CD2
|
A:PHE268
|
4.0
|
21.1
|
1.0
|
CE1
|
A:PHE320
|
4.0
|
21.1
|
1.0
|
C14
|
A:RDO1605
|
4.3
|
44.2
|
1.0
|
CZ
|
A:PHE320
|
4.3
|
21.7
|
1.0
|
CD1
|
A:PHE268
|
4.3
|
26.5
|
1.0
|
C11
|
A:RDO1605
|
4.4
|
43.6
|
1.0
|
CA
|
A:PRO287
|
4.5
|
46.4
|
1.0
|
CG2
|
A:VAL346
|
4.7
|
27.2
|
1.0
|
CE2
|
A:PHE268
|
4.8
|
24.6
|
1.0
|
C16
|
A:RDO1605
|
4.8
|
41.7
|
1.0
|
CD
|
A:PRO287
|
4.9
|
46.5
|
1.0
|
CD1
|
A:ILE291
|
4.9
|
33.2
|
1.0
|
CD1
|
A:PHE320
|
5.0
|
20.4
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 8bsq
Go back to
Fluorine Binding Sites List in 8bsq
Fluorine binding site 3 out
of 3 in the Notum Inhibitor ARUK3006561
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Notum Inhibitor ARUK3006561 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1605
b:43.6
occ:1.00
|
F22
|
A:RDO1605
|
0.0
|
43.6
|
1.0
|
C19
|
A:RDO1605
|
1.4
|
44.5
|
1.0
|
F20
|
A:RDO1605
|
2.2
|
56.5
|
1.0
|
F21
|
A:RDO1605
|
2.2
|
39.9
|
1.0
|
C18
|
A:RDO1605
|
2.3
|
41.3
|
1.0
|
C17
|
A:RDO1605
|
2.7
|
37.4
|
1.0
|
CE1
|
A:PHE320
|
3.1
|
21.1
|
1.0
|
CZ
|
A:PHE320
|
3.2
|
21.7
|
1.0
|
C13
|
A:RDO1605
|
3.6
|
44.5
|
1.0
|
CB
|
A:PHE268
|
3.7
|
18.7
|
1.0
|
CD1
|
A:ILE291
|
3.7
|
33.2
|
1.0
|
CD1
|
A:PHE320
|
3.7
|
20.4
|
1.0
|
CE2
|
A:PHE320
|
3.9
|
21.9
|
1.0
|
CD2
|
A:PHE268
|
3.9
|
21.1
|
1.0
|
C16
|
A:RDO1605
|
4.0
|
41.7
|
1.0
|
CG
|
A:PHE268
|
4.1
|
19.6
|
1.0
|
O
|
A:PHE319
|
4.1
|
19.0
|
1.0
|
CB
|
A:PRO287
|
4.2
|
44.9
|
1.0
|
CG
|
A:PHE320
|
4.3
|
17.3
|
1.0
|
CD2
|
A:PHE320
|
4.3
|
19.9
|
1.0
|
C12
|
A:RDO1605
|
4.5
|
41.1
|
1.0
|
O
|
A:HOH1732
|
4.6
|
17.7
|
1.0
|
C14
|
A:RDO1605
|
4.7
|
44.2
|
1.0
|
C
|
A:PHE319
|
4.7
|
17.9
|
1.0
|
C15
|
A:RDO1605
|
4.9
|
40.1
|
1.0
|
CB
|
A:PHE319
|
4.9
|
19.0
|
1.0
|
CE2
|
A:PHE268
|
5.0
|
24.6
|
1.0
|
CA
|
A:PHE268
|
5.0
|
16.4
|
1.0
|
|
Reference:
Y.Zhao,
E.Y.Jones,
P.Fish.
Notum Inhibitor To Be Published.
Page generated: Fri Aug 2 16:53:51 2024
|