Fluorine in PDB 8bt0: Notum Inhibitor ARUK3005518
Enzymatic activity of Notum Inhibitor ARUK3005518
All present enzymatic activity of Notum Inhibitor ARUK3005518:
3.1.1.98;
Protein crystallography data
The structure of Notum Inhibitor ARUK3005518, PDB code: 8bt0
was solved by
Y.Zhao,
E.Y.Jones,
P.Fish,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
52.75 /
1.60
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.851,
71.54,
78.103,
90,
90,
90
|
R / Rfree (%)
|
18.9 /
21.5
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Notum Inhibitor ARUK3005518
(pdb code 8bt0). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Notum Inhibitor ARUK3005518, PDB code: 8bt0:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 8bt0
Go back to
Fluorine Binding Sites List in 8bt0
Fluorine binding site 1 out
of 2 in the Notum Inhibitor ARUK3005518
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Notum Inhibitor ARUK3005518 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F512
b:42.6
occ:1.00
|
F01
|
A:RGO512
|
0.0
|
42.6
|
1.0
|
C02
|
A:RGO512
|
1.4
|
41.4
|
1.0
|
F03
|
A:RGO512
|
2.3
|
41.0
|
1.0
|
C14
|
A:RGO512
|
2.3
|
34.8
|
1.0
|
C04
|
A:RGO512
|
2.5
|
40.1
|
1.0
|
CE3
|
A:TRP128
|
2.7
|
44.4
|
1.0
|
CD2
|
A:TRP128
|
3.0
|
40.3
|
1.0
|
N13
|
A:RGO512
|
3.0
|
37.2
|
1.0
|
C05
|
A:RGO512
|
3.1
|
40.4
|
1.0
|
O15
|
A:RGO512
|
3.1
|
48.1
|
1.0
|
CZ3
|
A:TRP128
|
3.2
|
51.1
|
1.0
|
CA
|
A:TRP128
|
3.3
|
21.1
|
1.0
|
O
|
A:HOH601
|
3.4
|
22.7
|
1.0
|
CG
|
A:TRP128
|
3.6
|
30.2
|
1.0
|
CE2
|
A:TRP128
|
3.8
|
44.6
|
1.0
|
N
|
A:TRP128
|
3.8
|
22.3
|
1.0
|
CH2
|
A:TRP128
|
4.0
|
47.0
|
1.0
|
CB
|
A:TRP128
|
4.0
|
24.6
|
1.0
|
CE2
|
A:TYR129
|
4.1
|
24.7
|
1.0
|
CZ2
|
A:TRP128
|
4.2
|
41.1
|
1.0
|
C
|
A:TRP128
|
4.3
|
18.1
|
1.0
|
CD2
|
A:TYR129
|
4.3
|
23.5
|
1.0
|
C12
|
A:RGO512
|
4.5
|
31.9
|
1.0
|
CD1
|
A:TRP128
|
4.5
|
35.7
|
1.0
|
NE1
|
A:TRP128
|
4.6
|
33.6
|
1.0
|
OG
|
A:SER232
|
4.6
|
33.0
|
1.0
|
C06
|
A:RGO512
|
4.6
|
29.6
|
1.0
|
O
|
A:TRP128
|
4.7
|
18.3
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 8bt0
Go back to
Fluorine Binding Sites List in 8bt0
Fluorine binding site 2 out
of 2 in the Notum Inhibitor ARUK3005518
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Notum Inhibitor ARUK3005518 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F512
b:41.0
occ:1.00
|
F03
|
A:RGO512
|
0.0
|
41.0
|
1.0
|
C02
|
A:RGO512
|
1.4
|
41.4
|
1.0
|
F01
|
A:RGO512
|
2.3
|
42.6
|
1.0
|
C04
|
A:RGO512
|
2.4
|
40.1
|
1.0
|
C14
|
A:RGO512
|
2.4
|
34.8
|
1.0
|
O15
|
A:RGO512
|
3.0
|
48.1
|
1.0
|
OG
|
A:SER232
|
3.1
|
33.0
|
1.0
|
O
|
A:HOH601
|
3.2
|
22.7
|
1.0
|
N13
|
A:RGO512
|
3.4
|
37.2
|
1.0
|
C05
|
A:RGO512
|
3.6
|
40.4
|
1.0
|
CB
|
A:ALA342
|
3.6
|
22.7
|
1.0
|
CZ
|
A:PHE268
|
3.7
|
25.7
|
1.0
|
CE1
|
A:HIS389
|
4.2
|
33.0
|
1.0
|
NE2
|
A:HIS389
|
4.2
|
35.6
|
1.0
|
CE2
|
A:PHE268
|
4.3
|
21.2
|
1.0
|
CD2
|
A:TRP128
|
4.4
|
40.3
|
1.0
|
CE3
|
A:TRP128
|
4.4
|
44.4
|
1.0
|
CB
|
A:SER232
|
4.4
|
20.7
|
1.0
|
CZ3
|
A:TRP128
|
4.4
|
51.1
|
1.0
|
CE2
|
A:TRP128
|
4.4
|
44.6
|
1.0
|
CE1
|
A:PHE268
|
4.4
|
24.5
|
1.0
|
CH2
|
A:TRP128
|
4.5
|
47.0
|
1.0
|
CZ2
|
A:TRP128
|
4.5
|
41.1
|
1.0
|
N
|
A:ALA233
|
4.5
|
14.8
|
1.0
|
C06
|
A:RGO512
|
4.7
|
29.6
|
1.0
|
CA
|
A:SER232
|
4.8
|
15.4
|
1.0
|
C12
|
A:RGO512
|
4.8
|
31.9
|
1.0
|
C
|
A:SER232
|
4.8
|
18.1
|
1.0
|
N
|
A:TRP128
|
4.9
|
22.3
|
1.0
|
CG
|
A:TRP128
|
4.9
|
30.2
|
1.0
|
|
Reference:
Y.Zhao,
E.Y.Jones,
P.Fish.
Notum Inhibitor ARUK3005518 To Be Published.
Page generated: Fri Aug 2 16:55:47 2024
|