Fluorine in PDB 8c7y: Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
Enzymatic activity of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
All present enzymatic activity of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6:
2.7.11.1;
Protein crystallography data
The structure of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6, PDB code: 8c7y
was solved by
A.Chaikuad,
P.Bonnet,
S.Knapp,
Structural Genomics Consortium (Sgc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
74.55 /
1.65
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.269,
97.739,
115.279,
90,
90,
90
|
R / Rfree (%)
|
15.2 /
17.5
|
Other elements in 8c7y:
The structure of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6 also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
(pdb code 8c7y). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6, PDB code: 8c7y:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 8c7y
Go back to
Fluorine Binding Sites List in 8c7y
Fluorine binding site 1 out
of 4 in the Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F819
b:8.2
occ:1.00
|
F1
|
A:TXV819
|
0.0
|
8.2
|
1.0
|
C14
|
A:TXV819
|
1.4
|
8.0
|
1.0
|
C13
|
A:TXV819
|
2.3
|
8.2
|
1.0
|
C15
|
A:TXV819
|
2.4
|
7.9
|
1.0
|
C17
|
A:TXV819
|
2.8
|
8.4
|
1.0
|
C18
|
A:TXV819
|
3.1
|
7.8
|
1.0
|
C19
|
A:TXV819
|
3.2
|
7.7
|
1.0
|
CB
|
A:ALA481
|
3.4
|
8.1
|
1.0
|
C16
|
A:TXV819
|
3.6
|
8.3
|
1.0
|
C12
|
A:TXV819
|
3.6
|
8.4
|
1.0
|
O1
|
A:TXV819
|
3.7
|
8.9
|
1.0
|
CB
|
A:LYS483
|
3.8
|
12.1
|
1.0
|
OG1
|
A:THR529
|
3.8
|
8.2
|
1.0
|
N
|
A:LYS483
|
3.9
|
10.7
|
1.0
|
CG1
|
A:VAL471
|
4.0
|
11.4
|
1.0
|
C
|
A:ALA481
|
4.0
|
8.5
|
1.0
|
C11
|
A:TXV819
|
4.1
|
8.1
|
1.0
|
N
|
A:VAL482
|
4.2
|
9.2
|
1.0
|
C
|
A:VAL482
|
4.2
|
10.3
|
1.0
|
N2
|
A:TXV819
|
4.2
|
7.5
|
1.0
|
C21
|
A:TXV819
|
4.2
|
7.9
|
1.0
|
O
|
A:ALA481
|
4.2
|
8.5
|
1.0
|
CG2
|
A:VAL471
|
4.3
|
11.4
|
1.0
|
CA
|
A:LYS483
|
4.3
|
11.6
|
1.0
|
O
|
A:ILE527
|
4.4
|
10.0
|
1.0
|
CA
|
A:ALA481
|
4.4
|
8.2
|
1.0
|
CA
|
A:VAL482
|
4.6
|
10.1
|
1.0
|
CG2
|
A:THR529
|
4.6
|
8.1
|
1.0
|
F
|
A:TXV819
|
4.7
|
8.5
|
1.0
|
O
|
A:VAL482
|
4.7
|
10.5
|
1.0
|
C20
|
A:TXV819
|
4.8
|
8.0
|
1.0
|
CB
|
A:VAL471
|
4.8
|
11.2
|
1.0
|
CB
|
A:THR529
|
4.8
|
8.0
|
1.0
|
CG
|
A:LYS483
|
4.9
|
13.1
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 8c7y
Go back to
Fluorine Binding Sites List in 8c7y
Fluorine binding site 2 out
of 4 in the Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F819
b:8.5
occ:1.00
|
F
|
A:TXV819
|
0.0
|
8.5
|
1.0
|
C16
|
A:TXV819
|
1.3
|
8.3
|
1.0
|
C15
|
A:TXV819
|
2.3
|
7.9
|
1.0
|
C11
|
A:TXV819
|
2.4
|
8.1
|
1.0
|
O
|
A:TXV819
|
2.7
|
8.7
|
1.0
|
C17
|
A:TXV819
|
2.8
|
8.4
|
1.0
|
N1
|
A:TXV819
|
2.9
|
8.6
|
1.0
|
O
|
A:ASP594
|
3.0
|
10.0
|
1.0
|
C10
|
A:TXV819
|
3.0
|
9.0
|
1.0
|
O1
|
A:TXV819
|
3.0
|
8.9
|
1.0
|
CA
|
A:PHE595
|
3.5
|
10.8
|
1.0
|
O
|
A:HOH1008
|
3.5
|
14.9
|
1.0
|
C
|
A:ASP594
|
3.6
|
9.8
|
1.0
|
CD1
|
A:PHE595
|
3.6
|
10.2
|
1.0
|
O
|
A:HOH945
|
3.6
|
16.9
|
1.0
|
C14
|
A:TXV819
|
3.6
|
8.0
|
1.0
|
C12
|
A:TXV819
|
3.6
|
8.4
|
1.0
|
N
|
A:PHE595
|
3.8
|
9.9
|
1.0
|
C18
|
A:TXV819
|
3.9
|
7.8
|
1.0
|
CG
|
A:PHE595
|
4.0
|
10.3
|
1.0
|
CD2
|
A:LEU514
|
4.1
|
8.1
|
1.0
|
C13
|
A:TXV819
|
4.1
|
8.2
|
1.0
|
CE1
|
A:PHE595
|
4.1
|
10.0
|
1.0
|
CB
|
A:PHE595
|
4.2
|
10.6
|
1.0
|
N
|
A:ASP594
|
4.3
|
8.7
|
1.0
|
C8
|
A:TXV819
|
4.4
|
9.1
|
1.0
|
C19
|
A:TXV819
|
4.4
|
7.7
|
1.0
|
C
|
A:PHE595
|
4.5
|
12.2
|
1.0
|
CA
|
A:ASP594
|
4.6
|
9.4
|
1.0
|
F1
|
A:TXV819
|
4.7
|
8.2
|
1.0
|
O
|
A:PHE595
|
4.8
|
12.9
|
1.0
|
CD2
|
A:PHE595
|
4.8
|
10.3
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 8c7y
Go back to
Fluorine Binding Sites List in 8c7y
Fluorine binding site 3 out
of 4 in the Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F803
b:10.1
occ:1.00
|
F1
|
B:TXV803
|
0.0
|
10.1
|
1.0
|
C14
|
B:TXV803
|
1.3
|
9.1
|
1.0
|
C13
|
B:TXV803
|
2.3
|
9.1
|
1.0
|
C15
|
B:TXV803
|
2.3
|
9.2
|
1.0
|
C17
|
B:TXV803
|
2.8
|
9.2
|
1.0
|
C18
|
B:TXV803
|
3.2
|
8.9
|
1.0
|
CB
|
B:ALA481
|
3.3
|
9.5
|
1.0
|
C19
|
B:TXV803
|
3.3
|
8.6
|
1.0
|
C16
|
B:TXV803
|
3.6
|
9.3
|
1.0
|
C12
|
B:TXV803
|
3.6
|
9.2
|
1.0
|
O1
|
B:TXV803
|
3.7
|
10.3
|
1.0
|
C
|
B:ALA481
|
3.8
|
9.8
|
1.0
|
N
|
B:LYS483
|
3.8
|
14.2
|
1.0
|
CG1
|
B:VAL471
|
3.8
|
15.1
|
1.0
|
OG1
|
B:THR529
|
3.9
|
9.3
|
1.0
|
N
|
B:VAL482
|
3.9
|
11.1
|
1.0
|
CB
|
B:LYS483
|
4.0
|
15.6
|
1.0
|
C
|
B:VAL482
|
4.0
|
13.1
|
1.0
|
O
|
B:ALA481
|
4.0
|
9.6
|
1.0
|
C11
|
B:TXV803
|
4.1
|
9.4
|
1.0
|
CA
|
B:ALA481
|
4.2
|
9.3
|
1.0
|
C21
|
B:TXV803
|
4.3
|
8.9
|
1.0
|
CG2
|
B:VAL471
|
4.3
|
17.2
|
1.0
|
CA
|
B:VAL482
|
4.3
|
12.2
|
1.0
|
CA
|
B:LYS483
|
4.4
|
15.4
|
1.0
|
O
|
B:ILE527
|
4.4
|
11.4
|
1.0
|
N2
|
B:TXV803
|
4.4
|
8.4
|
1.0
|
O
|
B:VAL482
|
4.5
|
13.4
|
1.0
|
CB
|
B:VAL471
|
4.7
|
16.3
|
1.0
|
F
|
B:TXV803
|
4.7
|
9.8
|
1.0
|
CG2
|
B:THR529
|
4.7
|
8.9
|
1.0
|
C20
|
B:TXV803
|
4.9
|
8.9
|
1.0
|
CB
|
B:THR529
|
4.9
|
8.8
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 8c7y
Go back to
Fluorine Binding Sites List in 8c7y
Fluorine binding site 4 out
of 4 in the Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F803
b:9.8
occ:1.00
|
F
|
B:TXV803
|
0.0
|
9.8
|
1.0
|
C16
|
B:TXV803
|
1.3
|
9.3
|
1.0
|
C15
|
B:TXV803
|
2.3
|
9.2
|
1.0
|
C11
|
B:TXV803
|
2.4
|
9.4
|
1.0
|
O
|
B:TXV803
|
2.7
|
11.4
|
1.0
|
C17
|
B:TXV803
|
2.8
|
9.2
|
1.0
|
N1
|
B:TXV803
|
2.9
|
10.3
|
1.0
|
C10
|
B:TXV803
|
3.0
|
11.4
|
1.0
|
O
|
B:ASP594
|
3.0
|
14.5
|
1.0
|
O1
|
B:TXV803
|
3.0
|
10.3
|
1.0
|
CD1
|
B:PHE595
|
3.5
|
14.1
|
1.0
|
O
|
B:HOH913
|
3.5
|
21.4
|
1.0
|
CA
|
B:PHE595
|
3.5
|
15.5
|
1.0
|
O
|
B:HOH922
|
3.5
|
21.5
|
1.0
|
C
|
B:ASP594
|
3.5
|
14.1
|
1.0
|
C14
|
B:TXV803
|
3.6
|
9.1
|
1.0
|
C12
|
B:TXV803
|
3.6
|
9.2
|
1.0
|
N
|
B:PHE595
|
3.8
|
15.0
|
1.0
|
C18
|
B:TXV803
|
3.8
|
8.9
|
1.0
|
CG
|
B:PHE595
|
3.9
|
14.1
|
1.0
|
CD2
|
B:LEU514
|
4.0
|
8.6
|
1.0
|
CE1
|
B:PHE595
|
4.0
|
14.4
|
1.0
|
N
|
B:ASP594
|
4.1
|
11.6
|
1.0
|
C13
|
B:TXV803
|
4.1
|
9.1
|
1.0
|
CB
|
B:PHE595
|
4.2
|
14.7
|
1.0
|
C19
|
B:TXV803
|
4.3
|
8.6
|
1.0
|
C8
|
B:TXV803
|
4.4
|
13.2
|
1.0
|
CA
|
B:ASP594
|
4.5
|
13.5
|
1.0
|
C
|
B:PHE595
|
4.6
|
17.9
|
1.0
|
F1
|
B:TXV803
|
4.7
|
10.1
|
1.0
|
CD2
|
B:PHE595
|
4.8
|
13.8
|
1.0
|
O
|
B:PHE595
|
4.8
|
19.5
|
1.0
|
CZ
|
B:PHE595
|
4.9
|
13.7
|
1.0
|
C21
|
B:TXV803
|
5.0
|
8.9
|
1.0
|
|
Reference:
A.Chaikuad,
P.Bonnet,
S.Knapp,
Structural Genomics Consortium (Sgc).
Crystal Structure of Braf V600E in Complex with A Hybrid Compound 6 To Be Published.
Page generated: Fri Aug 2 17:06:59 2024
|