Atomistry » Fluorine » PDB 8czv-8dhh » 8dfc
Atomistry »
  Fluorine »
    PDB 8czv-8dhh »
      8dfc »

Fluorine in PDB 8dfc: Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii

Enzymatic activity of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii

All present enzymatic activity of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii:
1.18.6.1;

Other elements in 8dfc:

The structure of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii also contains other interesting chemical elements:

Molybdenum (Mo) 2 atoms
Aluminium (Al) 2 atoms
Magnesium (Mg) 2 atoms
Iron (Fe) 36 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii (pdb code 8dfc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii, PDB code: 8dfc:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 1 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F302

b:69.7
occ:1.00
 F1 E:ALF302 0.0 69.7 1.0
AL E:ALF302 1.8 69.0 1.0
MG E:MG303 2.1 60.8 1.0
O E:HOH414 2.5 57.2 1.0
F4 E:ALF302 2.5 78.0 1.0
F3 E:ALF302 2.5 70.1 1.0
O3B E:ADP301 2.6 55.9 1.0
O1B E:ADP301 2.9 64.8 1.0
PB E:ADP301 3.3 72.6 1.0
F2 E:ALF302 3.6 72.5 1.0
NZ E:LYS15 3.8 46.2 1.0
O1A E:ADP301 3.8 74.6 1.0
CE E:LYS15 3.8 36.4 1.0
O3A E:ADP301 4.1 70.0 1.0
CB E:SER16 4.3 48.5 1.0
PA E:ADP301 4.4 66.9 1.0
NZ F:LYS10 4.6 34.4 1.0
N E:SER16 4.6 56.6 1.0
OD2 E:ASP39 4.6 69.5 1.0
O2B E:ADP301 4.6 83.3 1.0
O2A E:ADP301 4.8 59.3 1.0
NZ E:LYS41 4.8 63.1 1.0
N E:GLY12 4.9 55.0 1.0
OD2 E:ASP43 4.9 73.4 1.0

Fluorine binding site 2 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 2 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F302

b:72.5
occ:1.00
 F2 E:ALF302 0.0 72.5 1.0
AL E:ALF302 1.8 69.0 1.0
F4 E:ALF302 2.5 78.0 1.0
F3 E:ALF302 2.5 70.1 1.0
NZ E:LYS41 3.0 63.1 1.0
F1 E:ALF302 3.6 69.7 1.0
OD2 F:ASP129 3.7 37.9 1.0
OD1 F:ASP129 3.7 33.9 1.0
NZ F:LYS10 4.0 34.4 1.0
O3B E:ADP301 4.0 55.9 1.0
CG F:ASP129 4.1 39.2 1.0
N E:GLY12 4.2 55.0 1.0
CE F:LYS10 4.3 36.2 1.0
CD F:LYS10 4.3 43.5 1.0
CE E:LYS41 4.4 64.8 1.0
CA E:GLY11 4.6 49.1 1.0
N F:GLY11 4.6 36.9 1.0
OD2 E:ASP39 4.8 69.5 1.0
C E:GLY11 4.8 51.5 1.0
CA F:GLY11 4.9 32.1 1.0
N E:GLY128 4.9 33.5 1.0

Fluorine binding site 3 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 3 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F302

b:70.1
occ:1.00
 F3 E:ALF302 0.0 70.1 1.0
AL E:ALF302 1.8 69.0 1.0
O3B E:ADP301 2.4 55.9 1.0
NZ E:LYS15 2.5 46.2 1.0
F2 E:ALF302 2.5 72.5 1.0
F1 E:ALF302 2.5 69.7 1.0
N E:GLY12 3.2 55.0 1.0
CE E:LYS15 3.3 36.4 1.0
CA E:GLY11 3.3 49.1 1.0
N E:GLY128 3.5 33.5 1.0
F4 E:ALF302 3.6 78.0 1.0
C E:GLY11 3.8 51.5 1.0
PB E:ADP301 3.8 72.6 1.0
CA E:GLY128 4.0 41.8 1.0
CA E:GLY12 4.3 55.0 1.0
O1B E:ADP301 4.4 64.8 1.0
O E:LYS10 4.4 50.5 1.0
O E:HOH414 4.4 57.2 1.0
C E:LEU127 4.4 35.4 1.0
N E:GLY11 4.4 60.2 1.0
OD2 F:ASP129 4.4 37.9 1.0
CA E:LEU127 4.6 40.2 1.0
MG E:MG303 4.7 60.8 1.0
CD E:LYS15 4.7 40.1 1.0
O2B E:ADP301 4.7 83.3 1.0
O3A E:ADP301 4.8 70.0 1.0
C E:LYS10 4.8 52.9 1.0
O E:GLY11 5.0 56.7 1.0

Fluorine binding site 4 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 4 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F302

b:78.0
occ:1.00
 F4 E:ALF302 0.0 78.0 1.0
AL E:ALF302 1.8 69.0 1.0
NZ E:LYS41 2.4 63.1 1.0
F2 E:ALF302 2.5 72.5 1.0
F1 E:ALF302 2.5 69.7 1.0
CE E:LYS41 3.2 64.8 1.0
NZ F:LYS10 3.3 34.4 1.0
MG E:MG303 3.3 60.8 1.0
F3 E:ALF302 3.6 70.1 1.0
OD2 E:ASP43 3.6 73.4 1.0
O1A E:ADP301 3.9 74.6 1.0
OD2 E:ASP39 4.0 69.5 1.0
O3B E:ADP301 4.2 55.9 1.0
CE F:LYS10 4.3 36.2 1.0
OD1 E:ASP43 4.3 66.9 1.0
O E:HOH414 4.4 57.2 1.0
CG E:ASP43 4.4 67.3 1.0
CD E:LYS41 4.6 63.1 1.0
CG E:ASP39 4.8 64.7 1.0
CD F:LYS10 4.8 43.5 1.0
O1B E:ADP301 5.0 64.8 1.0
OD1 E:ASP39 5.0 61.4 1.0

Fluorine binding site 5 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 5 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F303

b:54.2
occ:1.00
 F1 F:ALF303 0.0 54.2 1.0
AL F:ALF303 1.8 67.2 1.0
O1B F:ADP302 2.3 39.4 1.0
F3 F:ALF303 2.5 64.5 1.0
F4 F:ALF303 2.5 64.5 1.0
N F:GLY128 3.3 20.3 1.0
PB F:ADP302 3.4 36.2 1.0
NZ F:LYS15 3.4 35.7 1.0
F2 F:ALF303 3.6 77.7 1.0
O E:HOH404 3.6 39.3 1.0
CE F:LYS15 3.7 31.8 1.0
N F:GLY12 3.8 37.1 1.0
O2B F:ADP302 3.8 47.6 1.0
CA F:GLY128 3.9 20.5 1.0
CA F:GLY11 4.0 32.1 1.0
MG F:MG301 4.0 36.9 1.0
OD2 E:ASP129 4.1 47.6 1.0
O3B F:ADP302 4.1 45.8 1.0
OD2 F:ASP39 4.2 37.7 1.0
C F:LEU127 4.2 22.6 1.0
CA F:LEU127 4.3 22.4 1.0
C F:GLY11 4.4 38.0 1.0
O3A F:ADP302 4.7 45.0 1.0
NZ E:LYS10 4.8 45.8 1.0
CA F:GLY12 4.8 31.2 1.0
CB F:LEU127 4.8 23.6 1.0

Fluorine binding site 6 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 6 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F303

b:77.7
occ:1.00
 F2 F:ALF303 0.0 77.7 1.0
AL F:ALF303 1.8 67.2 1.0
F3 F:ALF303 2.5 64.5 1.0
F4 F:ALF303 2.5 64.5 1.0
MG F:MG301 2.7 36.9 1.0
OD2 F:ASP43 3.2 49.9 1.0
O1A F:ADP302 3.2 49.5 1.0
NZ E:LYS10 3.3 45.8 1.0
OD1 F:ASP43 3.5 43.0 1.0
F1 F:ALF303 3.6 54.2 1.0
O1B F:ADP302 3.6 39.4 1.0
CG F:ASP43 3.7 45.9 1.0
O2B F:ADP302 3.7 47.6 1.0
OD2 F:ASP39 4.0 37.7 1.0
PB F:ADP302 4.2 36.2 1.0
PA F:ADP302 4.5 44.1 1.0
CE E:MET156 4.6 67.4 1.0
CD F:LYS41 4.6 44.8 1.0
O3A F:ADP302 4.6 45.0 1.0
CE F:LYS41 4.6 46.5 1.0
CE E:LYS10 4.6 42.7 1.0
CG F:ASP39 4.7 36.3 1.0
OG F:SER16 4.9 39.5 1.0

Fluorine binding site 7 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 7 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F303

b:64.5
occ:1.00
 F3 F:ALF303 0.0 64.5 1.0
AL F:ALF303 1.8 67.2 1.0
NZ E:LYS10 2.3 45.8 1.0
F1 F:ALF303 2.5 54.2 1.0
F2 F:ALF303 2.5 77.7 1.0
O1B F:ADP302 2.5 39.4 1.0
CE E:LYS10 3.3 42.7 1.0
F4 F:ALF303 3.6 64.5 1.0
O E:HOH404 3.8 39.3 1.0
PB F:ADP302 3.9 36.2 1.0
N F:GLY12 4.0 37.1 1.0
O1A F:ADP302 4.2 49.5 1.0
O3A F:ADP302 4.3 45.0 1.0
MG F:MG301 4.4 36.9 1.0
O2B F:ADP302 4.4 47.6 1.0
CA F:GLY12 4.4 31.2 1.0
CD E:LYS10 4.4 46.6 1.0
CG E:LYS10 4.6 45.8 1.0
N E:GLY11 4.8 60.2 1.0
OD2 E:ASP129 4.9 47.6 1.0
C F:GLY11 4.9 38.0 1.0
O E:GLY11 4.9 56.7 1.0
PA F:ADP302 4.9 44.1 1.0

Fluorine binding site 8 out of 8 in 8dfc

Go back to Fluorine Binding Sites List in 8dfc
Fluorine binding site 8 out of 8 in the Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F303

b:64.5
occ:1.00
 F4 F:ALF303 0.0 64.5 1.0
AL F:ALF303 1.8 67.2 1.0
MG F:MG301 1.9 36.9 1.0
F2 F:ALF303 2.5 77.7 1.0
F1 F:ALF303 2.5 54.2 1.0
OD2 F:ASP39 2.7 37.7 1.0
O2B F:ADP302 3.1 47.6 1.0
O1B F:ADP302 3.4 39.4 1.0
F3 F:ALF303 3.6 64.5 1.0
PB F:ADP302 3.7 36.2 1.0
CG F:ASP39 3.9 36.3 1.0
CA F:LEU127 4.1 22.4 1.0
OG F:SER16 4.2 39.5 1.0
CE F:LYS15 4.3 31.8 1.0
OD2 F:ASP43 4.4 49.9 1.0
O1A F:ADP302 4.5 49.5 1.0
N F:GLY128 4.5 20.3 1.0
OD1 F:ASP43 4.6 43.0 1.0
CB F:ASP39 4.6 36.5 1.0
O F:VAL126 4.6 43.8 1.0
OD1 F:ASP39 4.7 39.3 1.0
CB F:LEU127 4.7 23.6 1.0
O3B F:ADP302 4.7 45.8 1.0
C F:LEU127 4.8 22.6 1.0
NZ F:LYS15 4.9 35.7 1.0
O3A F:ADP302 4.9 45.0 1.0
N F:LEU127 4.9 30.7 1.0
CB F:SER16 5.0 36.8 1.0
CG F:ASP43 5.0 45.9 1.0

Reference:

R.A.Warmack, D.C.Rees. Anaerobic Single Particle Cryoem of Nitrogenase To Be Published.
Page generated: Fri Aug 2 17:28:30 2024

Last articles

Na in 4F35
Na in 4EUZ
Na in 4F5Q
Na in 4F5N
Na in 4F5P
Na in 4F3Y
Na in 4F4R
Na in 4EZE
Na in 4EIB
Na in 4F06
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy