Fluorine in PDB 8dfd: Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Enzymatic activity of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
All present enzymatic activity of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii:
1.18.6.1;
Other elements in 8dfd:
The structure of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Fluorine atom in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
(pdb code 8dfd). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the
Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii, PDB code: 8dfd:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 1 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F602
b:32.9
occ:1.00
|
F1
|
E:ALF602
|
0.0
|
32.9
|
1.0
|
AL
|
E:ALF602
|
1.8
|
35.3
|
1.0
|
O3B
|
E:ADP601
|
2.4
|
42.1
|
1.0
|
F4
|
E:ALF602
|
2.5
|
34.8
|
1.0
|
F3
|
E:ALF602
|
2.5
|
42.9
|
1.0
|
O
|
E:HOH701
|
2.6
|
26.1
|
1.0
|
MG
|
E:MG603
|
2.7
|
38.3
|
1.0
|
O2B
|
E:ADP601
|
2.8
|
35.3
|
1.0
|
PB
|
E:ADP601
|
3.0
|
31.7
|
1.0
|
O
|
E:HOH736
|
3.1
|
32.5
|
1.0
|
O
|
E:HOH703
|
3.3
|
33.2
|
1.0
|
O1B
|
E:ADP601
|
3.4
|
34.3
|
1.0
|
F2
|
E:ALF602
|
3.6
|
39.0
|
1.0
|
OD2
|
E:ASP39
|
3.6
|
28.7
|
1.0
|
CE
|
E:LYS15
|
3.6
|
19.6
|
1.0
|
NZ
|
E:LYS15
|
3.7
|
20.8
|
1.0
|
CA
|
E:LEU127
|
3.8
|
22.9
|
1.0
|
N
|
E:GLY128
|
4.1
|
11.8
|
1.0
|
O
|
E:VAL126
|
4.1
|
37.1
|
1.0
|
C
|
E:LEU127
|
4.3
|
18.6
|
1.0
|
OG
|
E:SER16
|
4.4
|
34.0
|
1.0
|
CB
|
E:LEU127
|
4.5
|
18.6
|
1.0
|
O3A
|
E:ADP601
|
4.6
|
37.8
|
1.0
|
N
|
E:LEU127
|
4.6
|
27.5
|
1.0
|
C
|
E:VAL126
|
4.7
|
25.4
|
1.0
|
CG
|
E:ASP39
|
4.7
|
26.8
|
1.0
|
OD2
|
E:ASP125
|
4.8
|
27.2
|
1.0
|
CD
|
E:LYS15
|
4.9
|
21.2
|
1.0
|
CB
|
E:LYS15
|
4.9
|
23.5
|
1.0
|
N
|
E:GLY12
|
4.9
|
23.4
|
1.0
|
O2A
|
E:ADP601
|
5.0
|
43.8
|
1.0
|
|
Fluorine binding site 2 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 2 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F602
b:39.0
occ:1.00
|
F2
|
E:ALF602
|
0.0
|
39.0
|
1.0
|
AL
|
E:ALF602
|
1.8
|
35.3
|
1.0
|
F3
|
E:ALF602
|
2.5
|
42.9
|
1.0
|
F4
|
E:ALF602
|
2.5
|
34.8
|
1.0
|
O3B
|
E:ADP601
|
2.5
|
42.1
|
1.0
|
NZ
|
F:LYS10
|
2.6
|
27.6
|
1.0
|
F1
|
E:ALF602
|
3.6
|
32.9
|
1.0
|
N
|
E:GLY12
|
3.7
|
23.4
|
1.0
|
CE
|
F:LYS10
|
3.8
|
34.5
|
1.0
|
NZ
|
E:LYS41
|
4.0
|
36.1
|
1.0
|
PB
|
E:ADP601
|
4.0
|
31.7
|
1.0
|
CD
|
F:LYS10
|
4.0
|
29.1
|
1.0
|
OD1
|
F:ASP129
|
4.1
|
33.2
|
1.0
|
CA
|
E:GLY12
|
4.1
|
26.2
|
1.0
|
CG
|
F:LYS10
|
4.1
|
31.5
|
1.0
|
N
|
F:GLY11
|
4.2
|
25.4
|
1.0
|
O
|
F:HOH703
|
4.4
|
33.8
|
1.0
|
O
|
E:HOH701
|
4.5
|
26.1
|
1.0
|
CA
|
F:GLY11
|
4.6
|
23.1
|
1.0
|
C
|
E:GLY11
|
4.7
|
23.6
|
1.0
|
CE
|
E:LYS41
|
4.7
|
37.8
|
1.0
|
O1B
|
E:ADP601
|
4.7
|
34.3
|
1.0
|
O3A
|
E:ADP601
|
4.7
|
37.8
|
1.0
|
OD2
|
F:ASP129
|
4.8
|
27.0
|
1.0
|
CG
|
F:ASP129
|
4.8
|
33.0
|
1.0
|
O
|
F:GLY11
|
4.8
|
31.4
|
1.0
|
O2B
|
E:ADP601
|
4.9
|
35.3
|
1.0
|
CA
|
E:GLY11
|
4.9
|
19.8
|
1.0
|
|
Fluorine binding site 3 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 3 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F602
b:42.9
occ:1.00
|
F3
|
E:ALF602
|
0.0
|
42.9
|
1.0
|
AL
|
E:ALF602
|
1.8
|
35.3
|
1.0
|
F2
|
E:ALF602
|
2.5
|
39.0
|
1.0
|
F1
|
E:ALF602
|
2.5
|
32.9
|
1.0
|
O
|
E:HOH701
|
2.6
|
26.1
|
1.0
|
O3B
|
E:ADP601
|
2.6
|
42.1
|
1.0
|
O
|
E:HOH736
|
3.2
|
32.5
|
1.0
|
OD2
|
E:ASP39
|
3.4
|
28.7
|
1.0
|
NZ
|
E:LYS41
|
3.5
|
36.1
|
1.0
|
F4
|
E:ALF602
|
3.6
|
34.8
|
1.0
|
NZ
|
F:LYS10
|
3.6
|
27.6
|
1.0
|
OD2
|
E:ASP43
|
3.7
|
42.7
|
1.0
|
CE
|
E:LYS41
|
3.7
|
37.8
|
1.0
|
PB
|
E:ADP601
|
3.8
|
31.7
|
1.0
|
O2B
|
E:ADP601
|
3.8
|
35.3
|
1.0
|
MG
|
E:MG603
|
3.9
|
38.3
|
1.0
|
O2A
|
E:ADP601
|
4.1
|
43.8
|
1.0
|
OD1
|
E:ASP43
|
4.3
|
47.2
|
1.0
|
CG
|
E:ASP39
|
4.4
|
26.8
|
1.0
|
CG
|
E:ASP43
|
4.4
|
41.1
|
1.0
|
OD1
|
F:ASP129
|
4.6
|
33.2
|
1.0
|
O3A
|
E:ADP601
|
4.8
|
37.8
|
1.0
|
OG
|
E:SER16
|
4.8
|
34.0
|
1.0
|
O1B
|
E:ADP601
|
4.9
|
34.3
|
1.0
|
OD1
|
E:ASP39
|
5.0
|
30.3
|
1.0
|
|
Fluorine binding site 4 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 4 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F602
b:34.8
occ:1.00
|
F4
|
E:ALF602
|
0.0
|
34.8
|
1.0
|
AL
|
E:ALF602
|
1.8
|
35.3
|
1.0
|
O3B
|
E:ADP601
|
2.3
|
42.1
|
1.0
|
F1
|
E:ALF602
|
2.5
|
32.9
|
1.0
|
F2
|
E:ALF602
|
2.5
|
39.0
|
1.0
|
N
|
E:GLY12
|
2.8
|
23.4
|
1.0
|
NZ
|
E:LYS15
|
2.9
|
20.8
|
1.0
|
O1B
|
E:ADP601
|
3.2
|
34.3
|
1.0
|
PB
|
E:ADP601
|
3.3
|
31.7
|
1.0
|
CA
|
E:GLY11
|
3.3
|
19.8
|
1.0
|
C
|
E:GLY11
|
3.5
|
23.6
|
1.0
|
N
|
E:GLY128
|
3.5
|
11.8
|
1.0
|
F3
|
E:ALF602
|
3.6
|
42.9
|
1.0
|
CE
|
E:LYS15
|
3.8
|
19.6
|
1.0
|
O
|
F:HOH703
|
3.8
|
33.8
|
1.0
|
CA
|
E:GLY12
|
3.8
|
26.2
|
1.0
|
CA
|
E:GLY128
|
4.0
|
21.9
|
1.0
|
O2B
|
E:ADP601
|
4.2
|
35.3
|
1.0
|
OD2
|
F:ASP129
|
4.4
|
27.0
|
1.0
|
N
|
E:GLY11
|
4.5
|
26.1
|
1.0
|
O
|
E:LYS10
|
4.5
|
31.1
|
1.0
|
C
|
E:LEU127
|
4.5
|
18.6
|
1.0
|
O
|
E:HOH701
|
4.5
|
26.1
|
1.0
|
OD1
|
F:ASP129
|
4.5
|
33.2
|
1.0
|
NZ
|
F:LYS10
|
4.5
|
27.6
|
1.0
|
O3A
|
E:ADP601
|
4.6
|
37.8
|
1.0
|
CA
|
E:LEU127
|
4.7
|
22.9
|
1.0
|
O
|
E:GLY11
|
4.7
|
28.3
|
1.0
|
CG
|
F:ASP129
|
4.9
|
33.0
|
1.0
|
C
|
E:LYS10
|
4.9
|
26.9
|
1.0
|
C
|
E:GLY12
|
4.9
|
30.8
|
1.0
|
|
Fluorine binding site 5 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 5 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F601
b:51.0
occ:1.00
|
F1
|
F:ALF601
|
0.0
|
51.0
|
1.0
|
AL
|
F:ALF601
|
1.8
|
39.5
|
1.0
|
F4
|
F:ALF601
|
2.5
|
52.4
|
1.0
|
F3
|
F:ALF601
|
2.5
|
48.0
|
1.0
|
O
|
E:HOH757
|
2.5
|
31.7
|
1.0
|
O1B
|
F:ADP600
|
2.6
|
30.8
|
1.0
|
N
|
F:GLY12
|
2.8
|
34.1
|
1.0
|
CE
|
E:LYS10
|
3.5
|
28.0
|
1.0
|
CA
|
F:GLY11
|
3.5
|
23.1
|
1.0
|
C
|
F:GLY11
|
3.6
|
29.0
|
1.0
|
F2
|
F:ALF601
|
3.6
|
47.3
|
1.0
|
CA
|
F:GLY12
|
3.7
|
32.5
|
1.0
|
CA
|
E:GLY11
|
3.8
|
19.8
|
1.0
|
NZ
|
E:LYS10
|
3.8
|
27.0
|
1.0
|
N
|
E:GLY11
|
3.9
|
26.1
|
1.0
|
O
|
F:HOH703
|
3.9
|
33.8
|
1.0
|
OD2
|
E:ASP129
|
4.0
|
30.7
|
1.0
|
PB
|
F:ADP600
|
4.0
|
24.5
|
1.0
|
O
|
E:GLY11
|
4.2
|
28.3
|
1.0
|
C
|
E:GLY11
|
4.4
|
23.6
|
1.0
|
CD
|
E:LYS10
|
4.4
|
29.5
|
1.0
|
O2B
|
F:ADP600
|
4.5
|
26.6
|
1.0
|
OD1
|
E:ASP129
|
4.6
|
33.0
|
1.0
|
O
|
F:GLY11
|
4.6
|
31.4
|
1.0
|
NZ
|
F:LYS41
|
4.6
|
28.2
|
1.0
|
CG
|
E:ASP129
|
4.7
|
29.5
|
1.0
|
CG
|
E:LYS10
|
4.7
|
25.1
|
1.0
|
NZ
|
F:LYS15
|
4.8
|
24.4
|
1.0
|
O3A
|
F:ADP600
|
4.9
|
33.5
|
1.0
|
N
|
F:GLY128
|
4.9
|
25.1
|
1.0
|
N
|
F:GLY11
|
4.9
|
25.4
|
1.0
|
O3B
|
F:ADP600
|
5.0
|
35.2
|
1.0
|
|
Fluorine binding site 6 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 6 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F601
b:47.3
occ:1.00
|
F2
|
F:ALF601
|
0.0
|
47.3
|
1.0
|
AL
|
F:ALF601
|
1.8
|
39.5
|
1.0
|
O
|
F:HOH701
|
2.3
|
32.1
|
1.0
|
O1B
|
F:ADP600
|
2.3
|
30.8
|
1.0
|
F3
|
F:ALF601
|
2.5
|
48.0
|
1.0
|
F4
|
F:ALF601
|
2.5
|
52.4
|
1.0
|
O3B
|
F:ADP600
|
2.6
|
35.2
|
1.0
|
MG
|
F:MG602
|
2.9
|
40.1
|
1.0
|
PB
|
F:ADP600
|
3.0
|
24.5
|
1.0
|
O
|
F:HOH716
|
3.0
|
29.9
|
1.0
|
OD2
|
F:ASP39
|
3.2
|
28.8
|
1.0
|
O
|
F:HOH702
|
3.4
|
35.8
|
1.0
|
F1
|
F:ALF601
|
3.6
|
51.0
|
1.0
|
O2B
|
F:ADP600
|
3.7
|
26.6
|
1.0
|
OG
|
F:SER16
|
4.0
|
29.4
|
1.0
|
NZ
|
F:LYS41
|
4.1
|
28.2
|
1.0
|
CA
|
F:LEU127
|
4.2
|
18.1
|
1.0
|
CG
|
F:ASP39
|
4.4
|
30.1
|
1.0
|
O1A
|
F:ADP600
|
4.4
|
31.4
|
1.0
|
CE
|
F:LYS15
|
4.4
|
19.3
|
1.0
|
O3A
|
F:ADP600
|
4.5
|
33.5
|
1.0
|
NZ
|
F:LYS15
|
4.5
|
24.4
|
1.0
|
O
|
F:VAL126
|
4.6
|
28.1
|
1.0
|
OD2
|
F:ASP43
|
4.6
|
35.5
|
1.0
|
NZ
|
E:LYS10
|
4.6
|
27.0
|
1.0
|
CB
|
F:LEU127
|
4.7
|
21.2
|
1.0
|
N
|
F:GLY128
|
4.7
|
25.1
|
1.0
|
O
|
E:HOH757
|
4.9
|
31.7
|
1.0
|
C
|
F:LEU127
|
4.9
|
23.8
|
1.0
|
OD1
|
F:ASP43
|
5.0
|
34.9
|
1.0
|
|
Fluorine binding site 7 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 7 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F601
b:48.0
occ:1.00
|
F3
|
F:ALF601
|
0.0
|
48.0
|
1.0
|
AL
|
F:ALF601
|
1.8
|
39.5
|
1.0
|
F2
|
F:ALF601
|
2.5
|
47.3
|
1.0
|
F1
|
F:ALF601
|
2.5
|
51.0
|
1.0
|
O1B
|
F:ADP600
|
2.5
|
30.8
|
1.0
|
NZ
|
E:LYS10
|
2.7
|
27.0
|
1.0
|
NZ
|
F:LYS41
|
2.7
|
28.2
|
1.0
|
O
|
E:HOH757
|
3.0
|
31.7
|
1.0
|
CE
|
E:LYS10
|
3.4
|
28.0
|
1.0
|
F4
|
F:ALF601
|
3.6
|
52.4
|
1.0
|
O
|
F:HOH701
|
3.6
|
32.1
|
1.0
|
CE
|
F:LYS41
|
3.7
|
28.3
|
1.0
|
O
|
E:HOH724
|
3.8
|
39.1
|
1.0
|
PB
|
F:ADP600
|
3.9
|
24.5
|
1.0
|
OD2
|
F:ASP43
|
4.1
|
35.5
|
1.0
|
O3B
|
F:ADP600
|
4.1
|
35.2
|
1.0
|
O1A
|
F:ADP600
|
4.2
|
31.4
|
1.0
|
CD
|
E:LYS10
|
4.3
|
29.5
|
1.0
|
OD2
|
F:ASP39
|
4.4
|
28.8
|
1.0
|
O
|
F:HOH716
|
4.5
|
29.9
|
1.0
|
OD1
|
E:ASP129
|
4.6
|
33.0
|
1.0
|
O3A
|
F:ADP600
|
4.7
|
33.5
|
1.0
|
N
|
F:GLY12
|
4.8
|
34.1
|
1.0
|
CD
|
F:LYS41
|
4.9
|
28.3
|
1.0
|
O2B
|
F:ADP600
|
5.0
|
26.6
|
1.0
|
|
Fluorine binding site 8 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 8 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F601
b:52.4
occ:1.00
|
F4
|
F:ALF601
|
0.0
|
52.4
|
1.0
|
AL
|
F:ALF601
|
1.8
|
39.5
|
1.0
|
O1B
|
F:ADP600
|
2.4
|
30.8
|
1.0
|
F1
|
F:ALF601
|
2.5
|
51.0
|
1.0
|
F2
|
F:ALF601
|
2.5
|
47.3
|
1.0
|
NZ
|
F:LYS15
|
2.7
|
24.4
|
1.0
|
O2B
|
F:ADP600
|
3.1
|
26.6
|
1.0
|
N
|
F:GLY128
|
3.1
|
25.1
|
1.0
|
CE
|
F:LYS15
|
3.2
|
19.3
|
1.0
|
PB
|
F:ADP600
|
3.2
|
24.5
|
1.0
|
N
|
F:GLY12
|
3.5
|
34.1
|
1.0
|
CA
|
F:GLY11
|
3.5
|
23.1
|
1.0
|
F3
|
F:ALF601
|
3.6
|
48.0
|
1.0
|
CA
|
F:GLY128
|
3.7
|
15.2
|
1.0
|
O3B
|
F:ADP600
|
3.9
|
35.2
|
1.0
|
C
|
F:LEU127
|
3.9
|
23.8
|
1.0
|
CA
|
F:LEU127
|
4.0
|
18.1
|
1.0
|
C
|
F:GLY11
|
4.0
|
29.0
|
1.0
|
OD2
|
E:ASP129
|
4.1
|
30.7
|
1.0
|
O
|
F:LYS10
|
4.2
|
33.1
|
1.0
|
O
|
F:HOH702
|
4.2
|
35.8
|
1.0
|
N
|
F:GLY11
|
4.5
|
25.4
|
1.0
|
O
|
F:HOH701
|
4.5
|
32.1
|
1.0
|
CA
|
F:GLY12
|
4.6
|
32.5
|
1.0
|
CB
|
F:LEU127
|
4.6
|
21.2
|
1.0
|
O
|
E:HOH757
|
4.6
|
31.7
|
1.0
|
CD
|
F:LYS15
|
4.6
|
19.2
|
1.0
|
O3A
|
F:ADP600
|
4.7
|
33.5
|
1.0
|
C
|
F:LYS10
|
4.7
|
30.6
|
1.0
|
O
|
F:HOH703
|
4.7
|
33.8
|
1.0
|
O
|
F:VAL126
|
4.8
|
28.1
|
1.0
|
MG
|
F:MG602
|
4.8
|
40.1
|
1.0
|
O
|
F:LEU127
|
4.8
|
28.8
|
1.0
|
OD2
|
F:ASP39
|
4.9
|
28.8
|
1.0
|
|
Fluorine binding site 9 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 9 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F602
b:34.2
occ:1.00
|
F1
|
G:ALF602
|
0.0
|
34.2
|
1.0
|
AL
|
G:ALF602
|
1.8
|
35.2
|
1.0
|
O
|
G:HOH725
|
2.2
|
30.6
|
1.0
|
O3B
|
G:ADP601
|
2.4
|
43.2
|
1.0
|
MG
|
G:MG603
|
2.4
|
33.0
|
1.0
|
F3
|
G:ALF602
|
2.5
|
37.2
|
1.0
|
F4
|
G:ALF602
|
2.5
|
45.2
|
1.0
|
O2B
|
G:ADP601
|
3.0
|
32.7
|
1.0
|
PB
|
G:ADP601
|
3.1
|
25.8
|
1.0
|
O
|
G:HOH744
|
3.2
|
27.0
|
1.0
|
CE
|
G:LYS15
|
3.5
|
20.3
|
1.0
|
O1B
|
G:ADP601
|
3.5
|
35.3
|
1.0
|
F2
|
G:ALF602
|
3.6
|
41.0
|
1.0
|
OD2
|
G:ASP39
|
3.6
|
27.5
|
1.0
|
NZ
|
G:LYS15
|
3.7
|
20.6
|
1.0
|
O
|
G:HOH746
|
3.8
|
32.2
|
1.0
|
CA
|
G:LEU127
|
3.9
|
25.1
|
1.0
|
N
|
G:GLY128
|
3.9
|
12.1
|
1.0
|
O
|
G:VAL126
|
4.0
|
39.2
|
1.0
|
C
|
G:LEU127
|
4.3
|
17.8
|
1.0
|
OG
|
G:SER16
|
4.3
|
35.5
|
1.0
|
O3A
|
G:ADP601
|
4.6
|
41.0
|
1.0
|
CB
|
G:LEU127
|
4.7
|
17.7
|
1.0
|
N
|
G:LEU127
|
4.7
|
27.1
|
1.0
|
C
|
G:VAL126
|
4.7
|
27.8
|
1.0
|
CD
|
G:LYS15
|
4.7
|
20.2
|
1.0
|
CG
|
G:ASP39
|
4.7
|
29.3
|
1.0
|
NZ
|
G:LYS41
|
4.9
|
30.6
|
1.0
|
CA
|
G:GLY128
|
4.9
|
22.0
|
1.0
|
N
|
G:GLY12
|
4.9
|
24.8
|
1.0
|
|
Fluorine binding site 10 out
of 16 in 8dfd
Go back to
Fluorine Binding Sites List in 8dfd
Fluorine binding site 10 out
of 16 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F602
b:41.0
occ:1.00
|
F2
|
G:ALF602
|
0.0
|
41.0
|
1.0
|
AL
|
G:ALF602
|
1.8
|
35.2
|
1.0
|
F4
|
G:ALF602
|
2.5
|
45.2
|
1.0
|
F3
|
G:ALF602
|
2.5
|
37.2
|
1.0
|
O3B
|
G:ADP601
|
2.6
|
43.2
|
1.0
|
NZ
|
H:LYS10
|
2.7
|
24.8
|
1.0
|
F1
|
G:ALF602
|
3.6
|
34.2
|
1.0
|
N
|
G:GLY12
|
3.7
|
24.8
|
1.0
|
CE
|
H:LYS10
|
3.7
|
30.5
|
1.0
|
CD
|
H:LYS10
|
3.9
|
22.6
|
1.0
|
NZ
|
G:LYS41
|
4.0
|
30.6
|
1.0
|
PB
|
G:ADP601
|
4.0
|
25.8
|
1.0
|
CA
|
G:GLY12
|
4.1
|
24.5
|
1.0
|
OD1
|
H:ASP129
|
4.1
|
35.5
|
1.0
|
CG
|
H:LYS10
|
4.2
|
25.0
|
1.0
|
N
|
H:GLY11
|
4.2
|
19.4
|
1.0
|
CE
|
G:LYS41
|
4.4
|
34.3
|
1.0
|
O
|
H:HOH401
|
4.4
|
37.1
|
1.0
|
CA
|
H:GLY11
|
4.5
|
19.5
|
1.0
|
C
|
G:GLY11
|
4.6
|
25.1
|
1.0
|
O
|
G:HOH746
|
4.7
|
32.2
|
1.0
|
O3A
|
G:ADP601
|
4.7
|
41.0
|
1.0
|
O1B
|
G:ADP601
|
4.7
|
35.3
|
1.0
|
OD2
|
H:ASP129
|
4.8
|
30.4
|
1.0
|
CA
|
G:GLY11
|
4.8
|
24.0
|
1.0
|
O
|
H:GLY11
|
4.8
|
30.7
|
1.0
|
MG
|
G:MG603
|
4.8
|
33.0
|
1.0
|
CG
|
H:ASP129
|
4.9
|
33.8
|
1.0
|
O2B
|
G:ADP601
|
5.0
|
32.7
|
1.0
|
|
Reference:
R.A.Warmack,
D.C.Rees.
Anaerobic Single Particle Cryoem of Nitrogenase To Be Published.
Page generated: Fri Aug 2 17:29:00 2024
|