Atomistry » Fluorine » PDB 8dxh-8e72 » 8e6w
Atomistry »
  Fluorine »
    PDB 8dxh-8e72 »
      8e6w »

Fluorine in PDB 8e6w: Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part

Other elements in 8e6w:

The structure of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part (pdb code 8e6w). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part, PDB code: 8e6w:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 1 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
e:F1002

b:172.7
occ:1.00
 F1 e:BEF1002 0.0 172.7 1.0
BE e:BEF1002 1.5 164.8 1.0
F3 e:BEF1002 2.5 157.0 1.0
F2 e:BEF1002 2.6 177.2 1.0
O2B e:ADP1000 2.7 168.3 1.0
O f:GLY337 3.3 23.7 1.0
NZ e:LYS184 3.4 23.4 1.0
NH1 f:ARG366 3.4 25.5 1.0
NH2 f:ARG366 3.5 25.5 1.0
N e:LYS181 3.7 20.5 1.0
CB e:PRO180 3.8 23.0 1.0
CZ f:ARG366 3.9 25.5 1.0
CA e:PRO180 3.9 23.0 1.0
C f:GLY337 3.9 23.7 1.0
PB e:ADP1000 4.1 191.2 1.0
CA f:GLY337 4.1 23.7 1.0
MG e:MG1001 4.3 157.0 1.0
C e:PRO180 4.4 23.0 1.0
CE e:LYS184 4.4 23.4 1.0
O f:GLY339 4.7 23.8 1.0
O1B e:ADP1000 4.7 178.7 1.0
O3B e:ADP1000 4.7 188.5 1.0
CA e:LYS181 4.7 20.5 1.0
N f:THR338 4.9 22.9 1.0

Fluorine binding site 2 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 2 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
e:F1002

b:177.2
occ:1.00
 F2 e:BEF1002 0.0 177.2 1.0
BE e:BEF1002 1.6 164.8 1.0
NZ e:LYS184 1.8 23.4 1.0
CE e:LYS184 2.2 23.4 1.0
F3 e:BEF1002 2.5 157.0 1.0
F1 e:BEF1002 2.6 172.7 1.0
O2B e:ADP1000 2.9 168.3 1.0
CD1 e:LEU320 3.2 25.1 1.0
PB e:ADP1000 3.5 191.2 1.0
O1B e:ADP1000 3.5 178.7 1.0
CD e:LYS184 3.5 23.4 1.0
CA e:PRO180 3.6 23.0 1.0
MG e:MG1001 3.8 157.0 1.0
O3B e:ADP1000 3.9 188.5 1.0
CB e:PRO180 4.0 23.0 1.0
N e:PRO180 4.4 23.0 1.0
N e:LYS181 4.4 20.5 1.0
CG e:LEU320 4.5 25.1 1.0
CG e:LYS184 4.5 23.4 1.0
O f:GLY337 4.6 23.7 1.0
O e:PRO179 4.6 25.2 1.0
C e:PRO180 4.6 23.0 1.0
C e:PRO179 4.8 25.2 1.0
NH1 f:ARG366 4.9 25.5 1.0
CB e:LYS184 5.0 23.4 1.0
O3A e:ADP1000 5.0 230.8 1.0
NH2 f:ARG366 5.0 25.5 1.0

Fluorine binding site 3 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 3 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
e:F1002

b:157.0
occ:1.00
 F3 e:BEF1002 0.0 157.0 1.0
BE e:BEF1002 1.5 164.8 1.0
MG e:MG1001 1.9 157.0 1.0
O2B e:ADP1000 2.5 168.3 1.0
F2 e:BEF1002 2.5 177.2 1.0
F1 e:BEF1002 2.5 172.7 1.0
NZ e:LYS184 2.8 23.4 1.0
O3B e:ADP1000 3.0 188.5 1.0
CE e:LYS184 3.2 23.4 1.0
PB e:ADP1000 3.2 191.2 1.0
NH2 f:ARG366 3.8 25.5 1.0
O1B e:ADP1000 4.1 178.7 1.0
O2A e:ADP1000 4.3 210.7 1.0
O3A e:ADP1000 4.5 230.8 1.0
CD e:LYS184 4.6 23.4 1.0
OG1 e:THR185 4.7 21.8 1.0
O f:GLY337 4.7 23.7 1.0
CB e:LYS184 4.8 23.4 1.0
CZ f:ARG366 4.8 25.5 1.0
NH1 f:ARG366 4.9 25.5 1.0

Fluorine binding site 4 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 4 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
f:F1002

b:172.7
occ:1.00
 F1 f:BEF1002 0.0 172.7 1.0
BE f:BEF1002 1.5 164.8 1.0
F3 f:BEF1002 2.5 157.0 1.0
F2 f:BEF1002 2.6 177.2 1.0
O2B f:ADP1000 2.7 168.3 1.0
O a:GLY337 3.1 23.7 1.0
NZ f:LYS184 3.4 23.4 1.0
NH1 a:ARG366 3.7 25.5 1.0
N f:LYS181 3.7 20.5 1.0
C a:GLY337 3.7 23.7 1.0
NH2 a:ARG366 3.8 25.5 1.0
CB f:PRO180 3.8 23.0 1.0
CA f:PRO180 3.9 23.0 1.0
CA a:GLY337 4.0 23.7 1.0
PB f:ADP1000 4.1 191.2 1.0
CZ a:ARG366 4.1 25.5 1.0
MG f:MG1001 4.3 157.0 1.0
C f:PRO180 4.4 23.0 1.0
CE f:LYS184 4.4 23.4 1.0
O a:GLY339 4.7 23.8 1.0
O1B f:ADP1000 4.7 178.7 1.0
O3B f:ADP1000 4.7 188.5 1.0
CA f:LYS181 4.7 20.5 1.0
N a:THR338 4.7 22.9 1.0

Fluorine binding site 5 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 5 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
f:F1002

b:177.2
occ:1.00
 F2 f:BEF1002 0.0 177.2 1.0
BE f:BEF1002 1.6 164.8 1.0
NZ f:LYS184 1.8 23.4 1.0
CE f:LYS184 2.2 23.4 1.0
F3 f:BEF1002 2.5 157.0 1.0
F1 f:BEF1002 2.6 172.7 1.0
O2B f:ADP1000 2.9 168.3 1.0
CD1 f:LEU320 3.2 25.1 1.0
PB f:ADP1000 3.5 191.2 1.0
O1B f:ADP1000 3.5 178.7 1.0
CD f:LYS184 3.5 23.4 1.0
CA f:PRO180 3.6 23.0 1.0
MG f:MG1001 3.8 157.0 1.0
O3B f:ADP1000 3.9 188.5 1.0
CB f:PRO180 4.0 23.0 1.0
N f:PRO180 4.4 23.0 1.0
O a:GLY337 4.4 23.7 1.0
N f:LYS181 4.4 20.5 1.0
CG f:LEU320 4.5 25.1 1.0
CG f:LYS184 4.5 23.4 1.0
O f:PRO179 4.6 25.2 1.0
C f:PRO180 4.6 23.0 1.0
C f:PRO179 4.8 25.2 1.0
CB f:LYS184 5.0 23.4 1.0
O3A f:ADP1000 5.0 230.8 1.0

Fluorine binding site 6 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 6 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
f:F1002

b:157.0
occ:1.00
 F3 f:BEF1002 0.0 157.0 1.0
BE f:BEF1002 1.5 164.8 1.0
MG f:MG1001 1.8 157.0 1.0
O2B f:ADP1000 2.5 168.3 1.0
F2 f:BEF1002 2.5 177.2 1.0
F1 f:BEF1002 2.5 172.7 1.0
NZ f:LYS184 2.8 23.4 1.0
O3B f:ADP1000 3.0 188.5 1.0
CE f:LYS184 3.2 23.4 1.0
PB f:ADP1000 3.2 191.2 1.0
NH2 a:ARG366 4.0 25.5 1.0
O1B f:ADP1000 4.1 178.7 1.0
O1A f:ADP1000 4.3 210.7 1.0
O3A f:ADP1000 4.5 230.8 1.0
CD f:LYS184 4.6 23.4 1.0
O a:GLY337 4.6 23.7 1.0
OG1 f:THR185 4.6 21.8 1.0
CB f:LYS184 4.8 23.4 1.0
CZ a:ARG366 5.0 25.5 1.0
NH1 a:ARG366 5.0 25.5 1.0

Fluorine binding site 7 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 7 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F1002

b:172.7
occ:1.00
 F1 c:BEF1002 0.0 172.7 1.0
BE c:BEF1002 1.5 164.8 1.0
F3 c:BEF1002 2.5 157.0 1.0
F2 c:BEF1002 2.6 177.2 1.0
O2B c:ADP1000 2.7 168.3 1.0
O d:GLY337 3.4 23.7 1.0
NZ c:LYS184 3.4 23.4 1.0
NH1 d:ARG366 3.4 25.5 1.0
NH2 d:ARG366 3.5 25.5 1.0
N c:LYS181 3.7 20.5 1.0
CB c:PRO180 3.8 23.0 1.0
CZ d:ARG366 3.9 25.5 1.0
CA c:PRO180 3.9 23.0 1.0
C d:GLY337 4.0 23.7 1.0
PB c:ADP1000 4.1 191.2 1.0
CA d:GLY337 4.2 23.7 1.0
MG c:MG1001 4.3 157.0 1.0
C c:PRO180 4.4 23.0 1.0
CE c:LYS184 4.4 23.4 1.0
O3B c:ADP1000 4.7 178.7 1.0
O1B c:ADP1000 4.7 188.5 1.0
CA c:LYS181 4.7 20.5 1.0
O d:GLY339 4.8 23.8 1.0
N d:THR338 5.0 22.9 1.0

Fluorine binding site 8 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 8 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F1002

b:177.2
occ:1.00
 F2 c:BEF1002 0.0 177.2 1.0
BE c:BEF1002 1.6 164.8 1.0
NZ c:LYS184 1.8 23.4 1.0
CE c:LYS184 2.2 23.4 1.0
F3 c:BEF1002 2.5 157.0 1.0
F1 c:BEF1002 2.6 172.7 1.0
O2B c:ADP1000 2.9 168.3 1.0
CD1 c:LEU320 3.2 25.1 1.0
PB c:ADP1000 3.5 191.2 1.0
O3B c:ADP1000 3.5 178.7 1.0
CD c:LYS184 3.5 23.4 1.0
CA c:PRO180 3.6 23.0 1.0
MG c:MG1001 3.8 157.0 1.0
O1B c:ADP1000 3.9 188.5 1.0
CB c:PRO180 4.0 23.0 1.0
N c:PRO180 4.4 23.0 1.0
N c:LYS181 4.4 20.5 1.0
CG c:LEU320 4.5 25.1 1.0
CG c:LYS184 4.5 23.4 1.0
O c:PRO179 4.6 25.2 1.0
C c:PRO180 4.6 23.0 1.0
O d:GLY337 4.6 23.7 1.0
C c:PRO179 4.8 25.2 1.0
NH1 d:ARG366 5.0 25.5 1.0
CB c:LYS184 5.0 23.4 1.0
O3A c:ADP1000 5.0 230.8 1.0

Fluorine binding site 9 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 9 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F1002

b:157.0
occ:1.00
 F3 c:BEF1002 0.0 157.0 1.0
BE c:BEF1002 1.5 164.8 1.0
MG c:MG1001 1.8 157.0 1.0
O2B c:ADP1000 2.5 168.3 1.0
F2 c:BEF1002 2.5 177.2 1.0
F1 c:BEF1002 2.5 172.7 1.0
NZ c:LYS184 2.8 23.4 1.0
O1B c:ADP1000 3.0 188.5 1.0
CE c:LYS184 3.2 23.4 1.0
PB c:ADP1000 3.2 191.2 1.0
NH2 d:ARG366 3.9 25.5 1.0
O3B c:ADP1000 4.1 178.7 1.0
O2A c:ADP1000 4.3 210.7 1.0
O3A c:ADP1000 4.5 230.8 1.0
CD c:LYS184 4.6 23.4 1.0
OG1 c:THR185 4.6 21.8 1.0
O d:GLY337 4.8 23.7 1.0
CB c:LYS184 4.8 23.4 1.0
CZ d:ARG366 4.8 25.5 1.0
NH1 d:ARG366 4.9 25.5 1.0

Fluorine binding site 10 out of 18 in 8e6w

Go back to Fluorine Binding Sites List in 8e6w
Fluorine binding site 10 out of 18 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Rho Part within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:172.7
occ:1.00
 F1 b:BEF1002 0.0 172.7 1.0
BE b:BEF1002 1.5 164.8 1.0
F3 b:BEF1002 2.5 157.0 1.0
F2 b:BEF1002 2.6 177.2 1.0
O2B b:ADP1000 2.7 168.3 1.0
O c:GLY337 3.2 23.7 1.0
NZ b:LYS184 3.4 23.4 1.0
NH1 c:ARG366 3.6 25.5 1.0
NH2 c:ARG366 3.7 25.5 1.0
N b:LYS181 3.7 20.5 1.0
CB b:PRO180 3.8 23.0 1.0
CA b:PRO180 3.9 23.0 1.0
C c:GLY337 3.9 23.7 1.0
CZ c:ARG366 4.0 25.5 1.0
PB b:ADP1000 4.1 191.2 1.0
CA c:GLY337 4.1 23.7 1.0
MG b:MG1001 4.3 157.0 1.0
C b:PRO180 4.4 23.0 1.0
CE b:LYS184 4.4 23.4 1.0
O3B b:ADP1000 4.7 178.7 1.0
O1B b:ADP1000 4.7 188.5 1.0
CA b:LYS181 4.7 20.5 1.0

Reference:

V.Molodtsov, C.Wang, E.Firlar, J.T.Kaelber, R.H.Ebright. Structural Basis of Rho-Dependent Transcription Termination Biorxiv 2022.
DOI: 10.1101/2022.08.29.505764
Page generated: Fri Aug 2 17:59:26 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy