Fluorine in PDB 8eew: Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Other elements in 8eew:
The structure of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
(pdb code 8eew). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane, PDB code: 8eew:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 1 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:15.2
occ:1.00
|
F1
|
A:ALF1002
|
0.0
|
15.2
|
1.0
|
AL
|
A:ALF1002
|
1.8
|
14.3
|
1.0
|
H
|
A:MET322
|
2.0
|
24.4
|
1.0
|
H
|
A:THR323
|
2.5
|
25.9
|
1.0
|
F4
|
A:ALF1002
|
2.5
|
16.1
|
1.0
|
F3
|
A:ALF1002
|
2.5
|
15.9
|
1.0
|
HG3
|
A:MET321
|
2.6
|
31.7
|
1.0
|
N
|
A:MET322
|
2.8
|
24.4
|
1.0
|
HA
|
A:MET321
|
2.9
|
26.7
|
1.0
|
HE21
|
A:GLN297
|
3.0
|
121.5
|
1.0
|
HG2
|
A:GLN297
|
3.1
|
121.5
|
1.0
|
N
|
A:THR323
|
3.2
|
25.9
|
1.0
|
HG2
|
A:MET321
|
3.2
|
31.7
|
1.0
|
HB2
|
A:MET322
|
3.3
|
33.6
|
1.0
|
CG
|
A:MET321
|
3.3
|
31.7
|
1.0
|
HG1
|
A:THR323
|
3.5
|
32.5
|
1.0
|
C
|
A:MET321
|
3.6
|
29.2
|
1.0
|
F2
|
A:ALF1002
|
3.6
|
15.3
|
1.0
|
CA
|
A:MET321
|
3.6
|
26.7
|
1.0
|
HB
|
A:THR323
|
3.6
|
32.5
|
1.0
|
CA
|
A:MET322
|
3.6
|
22.5
|
1.0
|
NE2
|
A:GLN297
|
3.7
|
121.5
|
1.0
|
C
|
A:MET322
|
3.8
|
27.9
|
1.0
|
CG
|
A:GLN297
|
3.9
|
121.5
|
1.0
|
CB
|
A:MET322
|
3.9
|
33.6
|
1.0
|
HG3
|
A:GLN297
|
4.0
|
121.5
|
1.0
|
MG
|
A:MG1003
|
4.0
|
7.9
|
1.0
|
CB
|
A:MET321
|
4.0
|
31.7
|
1.0
|
OG1
|
A:THR323
|
4.0
|
32.5
|
1.0
|
O3B
|
A:GDP1001
|
4.1
|
9.7
|
1.0
|
CB
|
A:THR323
|
4.1
|
32.5
|
1.0
|
CA
|
A:THR323
|
4.2
|
22.2
|
1.0
|
H
|
A:GLY401
|
4.2
|
89.2
|
1.0
|
HE22
|
A:GLN297
|
4.2
|
121.5
|
1.0
|
CD
|
A:GLN297
|
4.2
|
121.5
|
1.0
|
O
|
A:THR323
|
4.3
|
24.9
|
1.0
|
HB2
|
A:MET321
|
4.3
|
31.7
|
1.0
|
HG2
|
A:MET322
|
4.4
|
33.6
|
1.0
|
HA
|
A:MET322
|
4.5
|
22.5
|
1.0
|
O2B
|
A:GDP1001
|
4.5
|
6.3
|
1.0
|
HB3
|
A:MET322
|
4.7
|
33.6
|
1.0
|
O
|
A:MET321
|
4.7
|
28.9
|
1.0
|
PB
|
A:GDP1001
|
4.7
|
7.8
|
1.0
|
C
|
A:THR323
|
4.7
|
23.8
|
1.0
|
CG
|
A:MET322
|
4.7
|
33.6
|
1.0
|
O1B
|
A:GDP1001
|
4.8
|
7.1
|
1.0
|
HA3
|
A:GLY401
|
4.8
|
89.2
|
1.0
|
HB3
|
A:MET321
|
4.8
|
31.7
|
1.0
|
O
|
A:GLU320
|
4.8
|
30.1
|
1.0
|
HZ2
|
A:LYS301
|
4.8
|
134.2
|
1.0
|
SD
|
A:MET321
|
4.8
|
31.7
|
1.0
|
N
|
A:MET321
|
4.9
|
23.7
|
1.0
|
HE2
|
A:MET321
|
4.9
|
31.7
|
1.0
|
HA
|
A:GLN297
|
4.9
|
87.2
|
1.0
|
O
|
A:MET322
|
5.0
|
28.6
|
1.0
|
HA
|
A:THR323
|
5.0
|
22.2
|
1.0
|
N
|
A:GLY401
|
5.0
|
89.2
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 2 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:15.3
occ:1.00
|
F2
|
A:ALF1002
|
0.0
|
15.3
|
1.0
|
AL
|
A:ALF1002
|
1.8
|
14.3
|
1.0
|
F4
|
A:ALF1002
|
2.5
|
16.1
|
1.0
|
F3
|
A:ALF1002
|
2.5
|
15.9
|
1.0
|
HZ2
|
A:LYS301
|
2.8
|
134.2
|
1.0
|
O3B
|
A:GDP1001
|
2.8
|
9.7
|
1.0
|
HG2
|
A:LYS301
|
2.9
|
134.2
|
1.0
|
HZ3
|
A:LYS301
|
3.0
|
134.2
|
1.0
|
O
|
A:GLN297
|
3.0
|
87.2
|
1.0
|
HA
|
A:GLN297
|
3.0
|
87.2
|
1.0
|
H
|
A:LYS301
|
3.2
|
90.0
|
1.0
|
NZ
|
A:LYS301
|
3.3
|
134.2
|
1.0
|
HG2
|
A:GLN297
|
3.4
|
121.5
|
1.0
|
HA2
|
A:GLY300
|
3.5
|
87.7
|
1.0
|
O2B
|
A:GDP1001
|
3.5
|
6.3
|
1.0
|
F1
|
A:ALF1002
|
3.6
|
15.2
|
1.0
|
H
|
A:GLY300
|
3.6
|
87.7
|
1.0
|
HG23
|
A:THR302
|
3.7
|
134.1
|
1.0
|
PB
|
A:GDP1001
|
3.8
|
7.8
|
1.0
|
C
|
A:GLN297
|
3.8
|
87.2
|
1.0
|
HA3
|
A:GLY401
|
3.8
|
89.2
|
1.0
|
HZ1
|
A:LYS301
|
3.8
|
134.2
|
1.0
|
CG
|
A:LYS301
|
3.8
|
134.2
|
1.0
|
CA
|
A:GLN297
|
3.8
|
87.2
|
1.0
|
N
|
A:LYS301
|
3.9
|
90.0
|
1.0
|
H
|
A:THR302
|
4.0
|
89.8
|
1.0
|
HG1
|
A:THR323
|
4.0
|
32.5
|
1.0
|
MG
|
A:MG1003
|
4.1
|
7.9
|
1.0
|
HD3
|
A:LYS301
|
4.1
|
134.2
|
1.0
|
CA
|
A:GLY300
|
4.2
|
87.7
|
1.0
|
N
|
A:GLY300
|
4.2
|
87.7
|
1.0
|
HG3
|
A:LYS301
|
4.2
|
134.2
|
1.0
|
CG
|
A:GLN297
|
4.3
|
121.5
|
1.0
|
CD
|
A:LYS301
|
4.3
|
134.2
|
1.0
|
H
|
A:GLY401
|
4.4
|
89.2
|
1.0
|
CE
|
A:LYS301
|
4.4
|
134.2
|
1.0
|
C
|
A:GLY300
|
4.4
|
87.7
|
1.0
|
O
|
A:ASP296
|
4.4
|
90.5
|
1.0
|
CA
|
A:GLY401
|
4.6
|
89.2
|
1.0
|
CB
|
A:GLN297
|
4.6
|
121.5
|
1.0
|
CG2
|
A:THR302
|
4.6
|
134.1
|
1.0
|
O3A
|
A:GDP1001
|
4.7
|
9.1
|
1.0
|
HA2
|
A:GLY401
|
4.7
|
89.2
|
1.0
|
CB
|
A:LYS301
|
4.7
|
134.2
|
1.0
|
N
|
A:THR302
|
4.8
|
89.8
|
1.0
|
HG21
|
A:THR302
|
4.8
|
134.1
|
1.0
|
HB3
|
A:LYS301
|
4.8
|
134.2
|
1.0
|
CD
|
A:GLN297
|
4.8
|
121.5
|
1.0
|
N
|
A:GLY401
|
4.8
|
89.2
|
1.0
|
CA
|
A:LYS301
|
4.8
|
90.0
|
1.0
|
OG1
|
A:THR323
|
4.9
|
32.5
|
1.0
|
O1B
|
A:GDP1001
|
4.9
|
7.1
|
1.0
|
N
|
A:GLN297
|
4.9
|
87.2
|
1.0
|
HG3
|
A:GLN297
|
4.9
|
121.5
|
1.0
|
HE21
|
A:GLN297
|
4.9
|
121.5
|
1.0
|
HE3
|
A:LYS301
|
5.0
|
134.2
|
1.0
|
HB2
|
A:GLN297
|
5.0
|
121.5
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 3 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:15.9
occ:1.00
|
F3
|
A:ALF1002
|
0.0
|
15.9
|
1.0
|
AL
|
A:ALF1002
|
1.8
|
14.3
|
1.0
|
O2B
|
A:GDP1001
|
2.5
|
6.3
|
1.0
|
F1
|
A:ALF1002
|
2.5
|
15.2
|
1.0
|
F2
|
A:ALF1002
|
2.5
|
15.3
|
1.0
|
HG2
|
A:GLN297
|
2.7
|
121.5
|
1.0
|
O
|
A:GLN297
|
2.8
|
87.2
|
1.0
|
HE21
|
A:GLN297
|
2.9
|
121.5
|
1.0
|
K
|
A:K1004
|
3.0
|
30.0
|
1.0
|
NE2
|
A:GLN297
|
3.0
|
121.5
|
1.0
|
CD
|
A:GLN297
|
3.2
|
121.5
|
1.0
|
O3B
|
A:GDP1001
|
3.2
|
9.7
|
1.0
|
HE22
|
A:GLN297
|
3.4
|
121.5
|
1.0
|
PB
|
A:GDP1001
|
3.4
|
7.8
|
1.0
|
CG
|
A:GLN297
|
3.4
|
121.5
|
1.0
|
F4
|
A:ALF1002
|
3.6
|
16.1
|
1.0
|
H
|
A:MET322
|
3.7
|
24.4
|
1.0
|
C
|
A:GLN297
|
3.7
|
87.2
|
1.0
|
HA
|
A:MET321
|
3.8
|
26.7
|
1.0
|
HA
|
A:GLN297
|
3.9
|
87.2
|
1.0
|
OE1
|
A:GLN297
|
3.9
|
121.5
|
1.0
|
O1B
|
A:GDP1001
|
4.0
|
7.1
|
1.0
|
HG3
|
A:GLN297
|
4.1
|
121.5
|
1.0
|
HA2
|
A:GLY300
|
4.1
|
87.7
|
1.0
|
H
|
A:GLY300
|
4.2
|
87.7
|
1.0
|
CA
|
A:GLN297
|
4.2
|
87.2
|
1.0
|
HG3
|
A:MET321
|
4.3
|
31.7
|
1.0
|
CB
|
A:GLN297
|
4.4
|
121.5
|
1.0
|
MG
|
A:MG1003
|
4.5
|
7.9
|
1.0
|
N
|
A:MET322
|
4.5
|
24.4
|
1.0
|
HB2
|
A:MET322
|
4.5
|
33.6
|
1.0
|
HA
|
A:SER298
|
4.5
|
85.1
|
1.0
|
H
|
A:THR323
|
4.7
|
25.9
|
1.0
|
CA
|
A:MET321
|
4.7
|
26.7
|
1.0
|
N
|
A:SER298
|
4.8
|
85.1
|
1.0
|
O3A
|
A:GDP1001
|
4.8
|
9.1
|
1.0
|
N
|
A:GLY300
|
4.9
|
87.7
|
1.0
|
HG2
|
A:MET322
|
4.9
|
33.6
|
1.0
|
HZ2
|
A:LYS301
|
4.9
|
134.2
|
1.0
|
O
|
A:GLU320
|
4.9
|
30.1
|
1.0
|
CA
|
A:GLY300
|
4.9
|
87.7
|
1.0
|
HA3
|
A:GLY401
|
5.0
|
89.2
|
1.0
|
HG1
|
A:THR323
|
5.0
|
32.5
|
1.0
|
HB3
|
A:GLN297
|
5.0
|
121.5
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 4 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:16.1
occ:1.00
|
F4
|
A:ALF1002
|
0.0
|
16.1
|
1.0
|
AL
|
A:ALF1002
|
1.8
|
14.3
|
1.0
|
HG1
|
A:THR323
|
2.0
|
32.5
|
1.0
|
F1
|
A:ALF1002
|
2.5
|
15.2
|
1.0
|
F2
|
A:ALF1002
|
2.5
|
15.3
|
1.0
|
HB
|
A:THR323
|
2.6
|
32.5
|
1.0
|
HZ3
|
A:LYS301
|
2.6
|
134.2
|
1.0
|
HZ2
|
A:LYS301
|
2.6
|
134.2
|
1.0
|
HZ1
|
A:LYS301
|
2.7
|
134.2
|
1.0
|
OG1
|
A:THR323
|
2.7
|
32.5
|
1.0
|
H
|
A:GLY401
|
2.8
|
89.2
|
1.0
|
NZ
|
A:LYS301
|
2.8
|
134.2
|
1.0
|
CB
|
A:THR323
|
3.1
|
32.5
|
1.0
|
H
|
A:THR323
|
3.1
|
25.9
|
1.0
|
N
|
A:GLY401
|
3.5
|
89.2
|
1.0
|
MG
|
A:MG1003
|
3.6
|
7.9
|
1.0
|
F3
|
A:ALF1002
|
3.6
|
15.9
|
1.0
|
HA3
|
A:GLY401
|
3.6
|
89.2
|
1.0
|
HA
|
A:PRO400
|
3.7
|
90.2
|
1.0
|
HG2
|
A:GLN297
|
3.7
|
121.5
|
1.0
|
O3B
|
A:GDP1001
|
3.7
|
9.7
|
1.0
|
HG23
|
A:THR302
|
3.8
|
134.1
|
1.0
|
N
|
A:THR323
|
3.8
|
25.9
|
1.0
|
CA
|
A:GLY401
|
4.0
|
89.2
|
1.0
|
CA
|
A:THR323
|
4.1
|
22.2
|
1.0
|
HG21
|
A:THR302
|
4.1
|
134.1
|
1.0
|
HG21
|
A:THR323
|
4.1
|
32.5
|
1.0
|
HG2
|
A:LYS301
|
4.2
|
134.2
|
1.0
|
CG2
|
A:THR323
|
4.2
|
32.5
|
1.0
|
CE
|
A:LYS301
|
4.3
|
134.2
|
1.0
|
HG3
|
A:MET321
|
4.3
|
31.7
|
1.0
|
HA
|
A:GLN297
|
4.3
|
87.2
|
1.0
|
H
|
A:MET322
|
4.3
|
24.4
|
1.0
|
CG2
|
A:THR302
|
4.4
|
134.1
|
1.0
|
C
|
A:PRO400
|
4.4
|
90.2
|
1.0
|
HA2
|
A:GLY401
|
4.4
|
89.2
|
1.0
|
CA
|
A:PRO400
|
4.5
|
90.2
|
1.0
|
HB2
|
A:MET322
|
4.5
|
33.6
|
1.0
|
O
|
A:LEU399
|
4.5
|
91.6
|
1.0
|
CG
|
A:GLN297
|
4.6
|
121.5
|
1.0
|
HE2
|
A:LYS301
|
4.7
|
134.2
|
1.0
|
O
|
A:THR323
|
4.7
|
24.9
|
1.0
|
HE3
|
A:LYS301
|
4.7
|
134.2
|
1.0
|
HG22
|
A:THR302
|
4.8
|
134.1
|
1.0
|
HG22
|
A:THR323
|
4.8
|
32.5
|
1.0
|
HA
|
A:THR323
|
4.8
|
22.2
|
1.0
|
HG3
|
A:GLN297
|
4.9
|
121.5
|
1.0
|
C
|
A:THR323
|
4.9
|
23.8
|
1.0
|
CG
|
A:LYS301
|
4.9
|
134.2
|
1.0
|
HG23
|
A:THR323
|
4.9
|
32.5
|
1.0
|
HG2
|
A:MET321
|
4.9
|
31.7
|
1.0
|
HG3
|
A:LYS301
|
4.9
|
134.2
|
1.0
|
HE21
|
A:GLN297
|
5.0
|
121.5
|
1.0
|
N
|
A:MET322
|
5.0
|
24.4
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 5 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:11.9
occ:1.00
|
F1
|
B:ALF1002
|
0.0
|
11.9
|
1.0
|
AL
|
B:ALF1002
|
1.8
|
10.9
|
1.0
|
H
|
B:THR323
|
2.0
|
25.9
|
1.0
|
MG
|
B:MG1003
|
2.2
|
8.2
|
1.0
|
HG3
|
B:MET321
|
2.4
|
31.7
|
1.0
|
HG2
|
B:MET321
|
2.5
|
31.7
|
1.0
|
F4
|
B:ALF1002
|
2.5
|
13.6
|
1.0
|
F3
|
B:ALF1002
|
2.5
|
14.3
|
1.0
|
HB
|
B:THR323
|
2.6
|
34.1
|
1.0
|
O1B
|
B:GDP1001
|
2.6
|
5.6
|
1.0
|
HA
|
B:MET321
|
2.7
|
26.7
|
1.0
|
N
|
B:THR323
|
2.8
|
25.9
|
1.0
|
H
|
B:MET322
|
2.8
|
24.4
|
1.0
|
O3B
|
B:GDP1001
|
2.8
|
8.0
|
1.0
|
CG
|
B:MET321
|
2.9
|
31.7
|
1.0
|
N
|
B:MET322
|
2.9
|
24.4
|
1.0
|
PB
|
B:GDP1001
|
3.0
|
7.9
|
1.0
|
C
|
B:MET321
|
3.1
|
29.2
|
1.0
|
O2B
|
B:GDP1001
|
3.1
|
8.5
|
1.0
|
CA
|
B:MET321
|
3.2
|
26.7
|
1.0
|
CB
|
B:THR323
|
3.3
|
34.1
|
1.0
|
CA
|
B:THR323
|
3.5
|
22.2
|
1.0
|
F2
|
B:ALF1002
|
3.6
|
12.6
|
1.0
|
CB
|
B:MET321
|
3.6
|
31.7
|
1.0
|
OG1
|
B:THR323
|
3.6
|
34.1
|
1.0
|
C
|
B:MET322
|
3.7
|
27.9
|
1.0
|
O
|
B:MET321
|
3.8
|
28.9
|
1.0
|
CA
|
B:MET322
|
3.8
|
22.5
|
1.0
|
HB2
|
B:MET322
|
4.0
|
33.6
|
1.0
|
HB2
|
B:MET321
|
4.1
|
31.7
|
1.0
|
H
|
B:GLY401
|
4.2
|
89.2
|
1.0
|
O
|
B:THR323
|
4.2
|
24.9
|
1.0
|
C
|
B:THR323
|
4.2
|
23.8
|
1.0
|
HB3
|
B:MET321
|
4.3
|
31.7
|
1.0
|
HA
|
B:THR323
|
4.4
|
22.2
|
1.0
|
HE2
|
B:LYS301
|
4.4
|
134.2
|
1.0
|
HD3
|
B:LYS301
|
4.4
|
134.2
|
1.0
|
CB
|
B:MET322
|
4.5
|
33.6
|
1.0
|
SD
|
B:MET321
|
4.5
|
31.7
|
1.0
|
HA
|
B:PRO400
|
4.5
|
90.2
|
1.0
|
HA
|
B:GLN297
|
4.5
|
87.2
|
1.0
|
N
|
B:MET321
|
4.6
|
23.7
|
1.0
|
O3A
|
B:GDP1001
|
4.6
|
7.3
|
1.0
|
HA
|
B:MET322
|
4.6
|
22.5
|
1.0
|
CG2
|
B:THR323
|
4.7
|
34.1
|
1.0
|
HE3
|
B:LYS301
|
4.7
|
134.2
|
1.0
|
O
|
B:GLU320
|
4.7
|
30.1
|
1.0
|
O
|
B:MET322
|
4.9
|
28.6
|
1.0
|
HG22
|
B:THR323
|
4.9
|
34.1
|
1.0
|
K
|
B:K1004
|
4.9
|
30.0
|
1.0
|
HG21
|
B:THR323
|
4.9
|
34.1
|
1.0
|
N
|
B:GLY401
|
5.0
|
89.2
|
1.0
|
CE
|
B:LYS301
|
5.0
|
134.2
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 6 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:12.6
occ:1.00
|
F2
|
B:ALF1002
|
0.0
|
12.6
|
1.0
|
AL
|
B:ALF1002
|
1.8
|
10.9
|
1.0
|
HA
|
B:GLN297
|
2.3
|
87.2
|
1.0
|
HD3
|
B:LYS301
|
2.4
|
134.2
|
1.0
|
O
|
B:ASP296
|
2.4
|
90.5
|
1.0
|
F4
|
B:ALF1002
|
2.5
|
13.6
|
1.0
|
F3
|
B:ALF1002
|
2.5
|
14.3
|
1.0
|
CA
|
B:GLN297
|
3.1
|
87.2
|
1.0
|
HA3
|
B:GLY401
|
3.2
|
89.2
|
1.0
|
HB2
|
B:LYS301
|
3.3
|
134.2
|
1.0
|
CD
|
B:LYS301
|
3.3
|
134.2
|
1.0
|
C
|
B:ASP296
|
3.4
|
90.5
|
1.0
|
O2B
|
B:GDP1001
|
3.4
|
8.5
|
1.0
|
HG3
|
B:MET321
|
3.4
|
31.7
|
1.0
|
C
|
B:GLN297
|
3.4
|
87.2
|
1.0
|
F1
|
B:ALF1002
|
3.6
|
11.9
|
1.0
|
MG
|
B:MG1003
|
3.6
|
8.2
|
1.0
|
O
|
B:SER298
|
3.6
|
85.1
|
1.0
|
H
|
B:SER298
|
3.6
|
85.1
|
1.0
|
N
|
B:GLN297
|
3.7
|
87.2
|
1.0
|
H
|
B:GLY401
|
3.7
|
89.2
|
1.0
|
N
|
B:SER298
|
3.7
|
85.1
|
1.0
|
HB3
|
B:LYS301
|
3.7
|
134.2
|
1.0
|
HD2
|
B:LYS301
|
3.7
|
134.2
|
1.0
|
CB
|
B:LYS301
|
3.8
|
134.2
|
1.0
|
CA
|
B:GLY401
|
3.9
|
89.2
|
1.0
|
CG
|
B:LYS301
|
4.0
|
134.2
|
1.0
|
O1B
|
B:GDP1001
|
4.1
|
5.6
|
1.0
|
N
|
B:GLY401
|
4.1
|
89.2
|
1.0
|
O
|
B:GLN297
|
4.1
|
87.2
|
1.0
|
HG3
|
B:LYS301
|
4.1
|
134.2
|
1.0
|
HA2
|
B:GLY401
|
4.1
|
89.2
|
1.0
|
HE2
|
B:LYS301
|
4.2
|
134.2
|
1.0
|
CE
|
B:LYS301
|
4.2
|
134.2
|
1.0
|
HE3
|
B:LYS301
|
4.3
|
134.2
|
1.0
|
CB
|
B:GLN297
|
4.3
|
121.5
|
1.0
|
HG2
|
B:GLN297
|
4.3
|
121.5
|
1.0
|
CG
|
B:MET321
|
4.4
|
31.7
|
1.0
|
PB
|
B:GDP1001
|
4.4
|
7.9
|
1.0
|
HB3
|
B:GLN297
|
4.4
|
121.5
|
1.0
|
C
|
B:SER298
|
4.5
|
85.1
|
1.0
|
H
|
B:GLN297
|
4.5
|
87.2
|
1.0
|
CA
|
B:SER298
|
4.7
|
85.1
|
1.0
|
HA
|
B:MET321
|
4.7
|
26.7
|
1.0
|
HG2
|
B:MET321
|
4.7
|
31.7
|
1.0
|
HB
|
B:THR323
|
4.7
|
34.1
|
1.0
|
CA
|
B:ASP296
|
4.8
|
90.5
|
1.0
|
CG
|
B:GLN297
|
4.8
|
121.5
|
1.0
|
HB3
|
B:SER298
|
4.9
|
114.5
|
1.0
|
HG2
|
B:LYS301
|
4.9
|
134.2
|
1.0
|
H
|
B:LYS301
|
4.9
|
90.0
|
1.0
|
K
|
B:K1004
|
4.9
|
30.0
|
1.0
|
HG3
|
B:GLN297
|
5.0
|
121.5
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 7 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:14.3
occ:1.00
|
F3
|
B:ALF1002
|
0.0
|
14.3
|
1.0
|
AL
|
B:ALF1002
|
1.8
|
10.9
|
1.0
|
O1B
|
B:GDP1001
|
2.1
|
5.6
|
1.0
|
F2
|
B:ALF1002
|
2.5
|
12.6
|
1.0
|
F1
|
B:ALF1002
|
2.5
|
11.9
|
1.0
|
HA
|
B:MET321
|
2.5
|
26.7
|
1.0
|
HA
|
B:GLN297
|
2.7
|
87.2
|
1.0
|
HG3
|
B:MET321
|
2.9
|
31.7
|
1.0
|
K
|
B:K1004
|
2.9
|
30.0
|
1.0
|
PB
|
B:GDP1001
|
3.1
|
7.9
|
1.0
|
O2B
|
B:GDP1001
|
3.1
|
8.5
|
1.0
|
O
|
B:GLN297
|
3.2
|
87.2
|
1.0
|
CA
|
B:GLN297
|
3.4
|
87.2
|
1.0
|
C
|
B:GLN297
|
3.4
|
87.2
|
1.0
|
HB3
|
B:GLN297
|
3.4
|
121.5
|
1.0
|
CA
|
B:MET321
|
3.5
|
26.7
|
1.0
|
F4
|
B:ALF1002
|
3.6
|
13.6
|
1.0
|
MG
|
B:MG1003
|
3.6
|
8.2
|
1.0
|
CG
|
B:MET321
|
3.7
|
31.7
|
1.0
|
H
|
B:MET322
|
3.7
|
24.4
|
1.0
|
O
|
B:SER298
|
3.8
|
85.1
|
1.0
|
HB2
|
B:MET321
|
3.9
|
31.7
|
1.0
|
CB
|
B:MET321
|
3.9
|
31.7
|
1.0
|
O
|
B:GLU320
|
3.9
|
30.1
|
1.0
|
CB
|
B:GLN297
|
3.9
|
121.5
|
1.0
|
HG2
|
B:MET321
|
4.0
|
31.7
|
1.0
|
O3B
|
B:GDP1001
|
4.0
|
8.0
|
1.0
|
HG2
|
B:GLN297
|
4.1
|
121.5
|
1.0
|
N
|
B:MET322
|
4.2
|
24.4
|
1.0
|
C
|
B:MET321
|
4.3
|
29.2
|
1.0
|
N
|
B:SER298
|
4.3
|
85.1
|
1.0
|
O3A
|
B:GDP1001
|
4.3
|
7.3
|
1.0
|
H
|
B:THR323
|
4.3
|
25.9
|
1.0
|
O1A
|
B:GDP1001
|
4.4
|
9.6
|
1.0
|
N
|
B:MET321
|
4.4
|
23.7
|
1.0
|
HD3
|
B:LYS301
|
4.4
|
134.2
|
1.0
|
C
|
B:SER298
|
4.4
|
85.1
|
1.0
|
O
|
B:ASP296
|
4.5
|
90.5
|
1.0
|
C
|
B:GLU320
|
4.5
|
27.1
|
1.0
|
CG
|
B:GLN297
|
4.6
|
121.5
|
1.0
|
HA
|
B:ALA299
|
4.6
|
87.2
|
1.0
|
HB2
|
B:LYS301
|
4.6
|
134.2
|
1.0
|
N
|
B:GLN297
|
4.7
|
87.2
|
1.0
|
HB3
|
B:LYS301
|
4.7
|
134.2
|
1.0
|
HB2
|
B:GLN297
|
4.7
|
121.5
|
1.0
|
H
|
B:SER298
|
4.7
|
85.1
|
1.0
|
HB3
|
B:MET321
|
4.8
|
31.7
|
1.0
|
HB
|
B:THR323
|
4.9
|
34.1
|
1.0
|
H
|
B:GLY401
|
4.9
|
89.2
|
1.0
|
HA3
|
B:GLY401
|
5.0
|
89.2
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 8eew
Go back to
Fluorine Binding Sites List in 8eew
Fluorine binding site 8 out
of 8 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:13.6
occ:1.00
|
F4
|
B:ALF1002
|
0.0
|
13.6
|
1.0
|
AL
|
B:ALF1002
|
1.8
|
10.9
|
1.0
|
MG
|
B:MG1003
|
2.2
|
8.2
|
1.0
|
HB
|
B:THR323
|
2.4
|
34.1
|
1.0
|
HD3
|
B:LYS301
|
2.5
|
134.2
|
1.0
|
H
|
B:GLY401
|
2.5
|
89.2
|
1.0
|
F2
|
B:ALF1002
|
2.5
|
12.6
|
1.0
|
F1
|
B:ALF1002
|
2.5
|
11.9
|
1.0
|
HE2
|
B:LYS301
|
2.5
|
134.2
|
1.0
|
HA
|
B:PRO400
|
2.9
|
90.2
|
1.0
|
HG3
|
B:MET321
|
3.0
|
31.7
|
1.0
|
N
|
B:GLY401
|
3.0
|
89.2
|
1.0
|
CD
|
B:LYS301
|
3.1
|
134.2
|
1.0
|
CE
|
B:LYS301
|
3.2
|
134.2
|
1.0
|
CB
|
B:THR323
|
3.3
|
34.1
|
1.0
|
HE3
|
B:LYS301
|
3.4
|
134.2
|
1.0
|
HD2
|
B:LYS301
|
3.4
|
134.2
|
1.0
|
O2B
|
B:GDP1001
|
3.5
|
8.5
|
1.0
|
HG2
|
B:MET321
|
3.5
|
31.7
|
1.0
|
O
|
B:LEU399
|
3.6
|
91.6
|
1.0
|
F3
|
B:ALF1002
|
3.6
|
14.3
|
1.0
|
HA3
|
B:GLY401
|
3.6
|
89.2
|
1.0
|
CG
|
B:MET321
|
3.7
|
31.7
|
1.0
|
C
|
B:PRO400
|
3.7
|
90.2
|
1.0
|
CA
|
B:PRO400
|
3.8
|
90.2
|
1.0
|
H
|
B:THR323
|
3.8
|
25.9
|
1.0
|
HG21
|
B:THR323
|
3.8
|
34.1
|
1.0
|
OG1
|
B:THR323
|
3.8
|
34.1
|
1.0
|
CA
|
B:GLY401
|
3.8
|
89.2
|
1.0
|
CG2
|
B:THR323
|
4.0
|
34.1
|
1.0
|
HG22
|
B:THR323
|
4.1
|
34.1
|
1.0
|
HA2
|
B:GLY401
|
4.1
|
89.2
|
1.0
|
HB3
|
B:LYS301
|
4.2
|
134.2
|
1.0
|
O
|
B:THR323
|
4.2
|
24.9
|
1.0
|
HA
|
B:GLN297
|
4.2
|
87.2
|
1.0
|
PB
|
B:GDP1001
|
4.3
|
7.9
|
1.0
|
CA
|
B:THR323
|
4.3
|
22.2
|
1.0
|
SD
|
B:MET321
|
4.4
|
31.7
|
1.0
|
N
|
B:THR323
|
4.4
|
25.9
|
1.0
|
O3B
|
B:GDP1001
|
4.4
|
8.0
|
1.0
|
O1B
|
B:GDP1001
|
4.4
|
5.6
|
1.0
|
O
|
B:ASP296
|
4.4
|
90.5
|
1.0
|
CG
|
B:LYS301
|
4.4
|
134.2
|
1.0
|
C
|
B:LEU399
|
4.4
|
91.6
|
1.0
|
NZ
|
B:LYS301
|
4.5
|
134.2
|
1.0
|
N
|
B:PRO400
|
4.6
|
90.2
|
1.0
|
HB2
|
B:LYS301
|
4.6
|
134.2
|
1.0
|
CB
|
B:LYS301
|
4.6
|
134.2
|
1.0
|
HZ3
|
B:LYS301
|
4.7
|
134.2
|
1.0
|
C
|
B:THR323
|
4.7
|
23.8
|
1.0
|
HA
|
B:MET321
|
4.7
|
26.7
|
1.0
|
O
|
B:PRO400
|
4.7
|
90.2
|
1.0
|
HZ1
|
B:LYS301
|
4.8
|
134.2
|
1.0
|
HB3
|
B:PRO400
|
4.8
|
201.3
|
1.0
|
HG23
|
B:THR323
|
4.9
|
34.1
|
1.0
|
HG3
|
B:LYS301
|
4.9
|
134.2
|
1.0
|
CB
|
B:PRO400
|
4.9
|
201.3
|
1.0
|
CB
|
B:MET321
|
5.0
|
31.7
|
1.0
|
|
Reference:
S.B.Nyenhuis,
X.Wu,
A.E.Stanton,
M.P.Strub,
Y.I.Yim,
B.Canagarajah,
J.E.Hinshaw.
OPA1 Helical Structures Give Perspective to Mitochondrial Dysfunction Nature 2023.
ISSN: ESSN 1476-4687
Page generated: Fri Aug 2 18:03:35 2024
|