Fluorine in PDB 8eio: The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
Enzymatic activity of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
All present enzymatic activity of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg:
5.6.1.6;
Other elements in 8eio:
The structure of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
(pdb code 8eio). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the
The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg, PDB code: 8eio:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
Fluorine binding site 1 out
of 5 in 8eio
Go back to
Fluorine Binding Sites List in 8eio
Fluorine binding site 1 out
of 5 in the The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1507
b:60.8
occ:1.00
|
F1
|
A:VX81507
|
0.0
|
60.8
|
1.0
|
C20
|
A:VX81507
|
1.4
|
60.0
|
1.0
|
F2
|
A:VX81507
|
2.2
|
60.6
|
1.0
|
O5
|
A:VX81507
|
2.3
|
62.3
|
1.0
|
O4
|
A:VX81507
|
2.3
|
59.6
|
1.0
|
OG
|
A:SER364
|
3.1
|
47.8
|
1.0
|
C16
|
A:VX81507
|
3.2
|
58.0
|
1.0
|
C17
|
A:VX81507
|
3.2
|
60.4
|
1.0
|
CD1
|
A:LEU195
|
3.6
|
54.5
|
1.0
|
CB
|
A:SER364
|
3.8
|
41.6
|
1.0
|
CG2
|
A:THR360
|
3.9
|
30.1
|
1.0
|
CG
|
A:LEU195
|
4.0
|
47.7
|
1.0
|
CB
|
A:ALA198
|
4.2
|
34.9
|
1.0
|
CA
|
A:LEU195
|
4.3
|
39.0
|
1.0
|
N
|
A:LEU195
|
4.3
|
34.7
|
1.0
|
C
|
A:GLY194
|
4.3
|
44.1
|
1.0
|
O
|
A:GLY194
|
4.4
|
51.9
|
1.0
|
C15
|
A:VX81507
|
4.4
|
59.2
|
1.0
|
C18
|
A:VX81507
|
4.4
|
57.5
|
1.0
|
CB
|
A:LEU195
|
4.8
|
40.0
|
1.0
|
CA
|
A:GLY194
|
4.9
|
43.1
|
1.0
|
O
|
A:THR360
|
4.9
|
35.4
|
1.0
|
|
Fluorine binding site 2 out
of 5 in 8eio
Go back to
Fluorine Binding Sites List in 8eio
Fluorine binding site 2 out
of 5 in the The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1507
b:60.6
occ:1.00
|
F2
|
A:VX81507
|
0.0
|
60.6
|
1.0
|
C20
|
A:VX81507
|
1.4
|
60.0
|
1.0
|
F1
|
A:VX81507
|
2.2
|
60.8
|
1.0
|
O4
|
A:VX81507
|
2.3
|
59.6
|
1.0
|
O5
|
A:VX81507
|
2.3
|
62.3
|
1.0
|
C16
|
A:VX81507
|
3.3
|
58.0
|
1.0
|
C17
|
A:VX81507
|
3.3
|
60.4
|
1.0
|
CD2
|
A:TRP361
|
3.3
|
37.1
|
1.0
|
CB
|
A:ALA198
|
3.5
|
34.9
|
1.0
|
CE2
|
A:TRP361
|
3.5
|
35.3
|
1.0
|
CE3
|
A:TRP361
|
3.5
|
39.8
|
1.0
|
CG
|
A:TRP361
|
3.8
|
28.4
|
1.0
|
CG2
|
A:THR360
|
3.8
|
30.1
|
1.0
|
OG
|
A:SER364
|
3.8
|
47.8
|
1.0
|
CZ3
|
A:TRP361
|
3.9
|
39.6
|
1.0
|
CZ2
|
A:TRP361
|
3.9
|
35.5
|
1.0
|
CA
|
A:TRP361
|
4.0
|
26.6
|
1.0
|
NE1
|
A:TRP361
|
4.0
|
42.7
|
1.0
|
CB
|
A:SER364
|
4.1
|
41.6
|
1.0
|
CH2
|
A:TRP361
|
4.1
|
42.4
|
1.0
|
CD1
|
A:TRP361
|
4.1
|
33.9
|
1.0
|
N
|
A:TRP361
|
4.2
|
33.3
|
1.0
|
O
|
A:THR360
|
4.2
|
35.4
|
1.0
|
C
|
A:THR360
|
4.3
|
28.9
|
1.0
|
CB
|
A:TRP361
|
4.5
|
28.5
|
1.0
|
CA
|
A:ALA198
|
4.5
|
28.2
|
1.0
|
C15
|
A:VX81507
|
4.6
|
59.2
|
1.0
|
C18
|
A:VX81507
|
4.6
|
57.5
|
1.0
|
CB
|
A:THR360
|
4.7
|
29.1
|
1.0
|
|
Fluorine binding site 3 out
of 5 in 8eio
Go back to
Fluorine Binding Sites List in 8eio
Fluorine binding site 3 out
of 5 in the The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1508
b:67.7
occ:1.00
|
F
|
A:WJX1508
|
0.0
|
67.7
|
1.0
|
C17
|
A:WJX1508
|
1.3
|
68.0
|
1.0
|
F2
|
A:WJX1508
|
2.1
|
68.2
|
1.0
|
F1
|
A:WJX1508
|
2.1
|
69.9
|
1.0
|
C14
|
A:WJX1508
|
2.4
|
65.4
|
1.0
|
C15
|
A:WJX1508
|
2.7
|
59.4
|
1.0
|
CD1
|
A:ILE132
|
2.8
|
48.9
|
1.0
|
C16
|
A:WJX1508
|
3.2
|
59.9
|
1.0
|
C13
|
A:WJX1508
|
3.6
|
65.3
|
1.0
|
CG1
|
A:ILE132
|
4.1
|
49.4
|
1.0
|
CG2
|
A:ILE132
|
4.3
|
44.1
|
1.0
|
O
|
A:WJX1508
|
4.7
|
65.5
|
1.0
|
CB
|
A:ILE132
|
4.8
|
44.1
|
1.0
|
|
Fluorine binding site 4 out
of 5 in 8eio
Go back to
Fluorine Binding Sites List in 8eio
Fluorine binding site 4 out
of 5 in the The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1508
b:69.9
occ:1.00
|
F1
|
A:WJX1508
|
0.0
|
69.9
|
1.0
|
C17
|
A:WJX1508
|
1.3
|
68.0
|
1.0
|
F
|
A:WJX1508
|
2.1
|
67.7
|
1.0
|
F2
|
A:WJX1508
|
2.1
|
68.2
|
1.0
|
C14
|
A:WJX1508
|
2.4
|
65.4
|
1.0
|
C13
|
A:WJX1508
|
2.6
|
65.3
|
1.0
|
C15
|
A:WJX1508
|
3.2
|
59.4
|
1.0
|
C16
|
A:WJX1508
|
3.7
|
59.9
|
1.0
|
O
|
A:WJX1508
|
4.0
|
65.5
|
1.0
|
CD1
|
A:ILE132
|
4.7
|
48.9
|
1.0
|
CE1
|
A:PHE16
|
4.9
|
49.3
|
1.0
|
CZ
|
A:PHE16
|
4.9
|
51.0
|
1.0
|
C12
|
A:WJX1508
|
4.9
|
59.4
|
1.0
|
|
Fluorine binding site 5 out
of 5 in 8eio
Go back to
Fluorine Binding Sites List in 8eio
Fluorine binding site 5 out
of 5 in the The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of The Complex of Phosphorylated Human Delta F508 Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Elexacaftor (Vx-445), Lumacaftor (Vx-809) and Atp/Mg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1508
b:68.2
occ:1.00
|
F2
|
A:WJX1508
|
0.0
|
68.2
|
1.0
|
C17
|
A:WJX1508
|
1.3
|
68.0
|
1.0
|
F
|
A:WJX1508
|
2.1
|
67.7
|
1.0
|
F1
|
A:WJX1508
|
2.1
|
69.9
|
1.0
|
C14
|
A:WJX1508
|
2.4
|
65.4
|
1.0
|
C16
|
A:WJX1508
|
2.7
|
59.9
|
1.0
|
C13
|
A:WJX1508
|
3.1
|
65.3
|
1.0
|
CD1
|
A:ILE132
|
3.4
|
48.9
|
1.0
|
C15
|
A:WJX1508
|
3.7
|
59.4
|
1.0
|
O
|
A:WJX1508
|
4.5
|
65.5
|
1.0
|
CG2
|
A:ILE132
|
4.5
|
44.1
|
1.0
|
CG
|
A:MET1105
|
4.7
|
50.9
|
1.0
|
CG1
|
A:ILE132
|
4.8
|
49.4
|
1.0
|
CE
|
A:MET1105
|
4.9
|
51.4
|
1.0
|
|
Reference:
K.Fiedorczuk,
J.Chen.
Molecular Structures Reveal Synergistic Rescue of Delta 508 Cftr By Trikafta Modulators. Science V. 378 284 2022.
ISSN: ESSN 1095-9203
PubMed: 36264792
DOI: 10.1126/SCIENCE.ADE2216
Page generated: Fri Aug 2 18:10:30 2024
|