Fluorine in PDB 8f0n: Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho

The structure of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho, PDB code: 8f0n was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.06 / 2.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	30.012, 50.353, 94.584, 90, 95.7, 90
R / Rfree (%)	19.4 / 25.6

The structure of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho also contains other interesting chemical elements:

Potassium

(K)

5 atoms

The binding sites of Fluorine atom in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho (pdb code 8f0n). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho, PDB code: 8f0n:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ B:F103 b:33.1 occ:1.00 F1 B:747103 0.0 33.1 1.0 C2 B:747103 1.3 32.8 1.0 C1 B:747103 2.3 34.3 1.0 C3 B:747103 2.4 33.2 1.0 O1 B:747103 2.7 34.1 1.0 O5' B:G17 3.2 30.1 1.0 C8 B:G17 3.4 26.2 1.0 C3' B:U16 3.6 40.0 1.0 C2' B:U16 3.6 39.7 1.0 N9 B:G17 3.6 25.6 1.0 C B:747103 3.6 36.6 1.0 O4' B:G17 3.6 26.6 1.0 C4 B:747103 3.7 33.7 1.0 OP2 B:G17 3.7 32.8 1.0 N7 B:G17 3.7 28.1 1.0 C5' B:G17 3.8 29.9 1.0 N1 B:U16 3.9 37.4 1.0 P B:G17 3.9 32.5 1.0 C2 B:U16 4.0 40.2 1.0 C4 B:G17 4.0 26.3 1.0 O3' B:U16 4.0 35.6 1.0 C5 B:G17 4.0 27.3 1.0 C6 B:U16 4.1 41.1 1.0 C5 B:747103 4.1 36.3 1.0 C1' B:G17 4.1 25.1 1.0 N3 B:U16 4.3 42.6 1.0 C1' B:U16 4.3 39.2 1.0 C4' B:G17 4.3 27.6 1.0 O2 B:U16 4.4 41.5 1.0 C5 B:U16 4.4 41.2 1.0 C4 B:U16 4.6 42.6 1.0 C2' B:G17 4.6 25.2 1.0 F B:747103 4.7 37.9 1.0 O2' B:U16 4.8 39.5 1.0 N3 B:G17 4.8 25.9 1.0 O5' B:U16 4.8 42.5 1.0 C4' B:U16 4.9 42.5 1.0 N13 B:747103 4.9 33.0 1.0 C6 B:G17 4.9 25.6 1.0 O4' B:U16 5.0 41.6 1.0

Fluorine binding site 2 out of 4 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ B:F103 b:37.9 occ:1.00 F B:747103 0.0 37.9 1.0 C B:747103 1.4 36.6 1.0 C1 B:747103 2.4 34.3 1.0 C5 B:747103 2.4 36.3 1.0 O1 B:747103 2.8 34.1 1.0 O4 B:U16 3.3 44.1 1.0 C2 B:747103 3.7 32.8 1.0 C4 B:747103 3.7 33.7 1.0 C4 B:U16 3.8 42.6 1.0 O6 B:G17 4.1 24.2 1.0 C3 B:747103 4.2 33.2 1.0 C5 B:U16 4.2 41.2 1.0 N3 B:U16 4.6 42.6 1.0 N7 B:G17 4.6 28.1 1.0 O2' B:G22 4.7 23.5 1.0 C6 B:G17 4.7 25.6 1.0 F1 B:747103 4.7 33.1 1.0 C5 B:G17 4.9 27.3 1.0 C6 B:747103 5.0 32.8 1.0

Fluorine binding site 3 out of 4 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ A:F104 b:27.5 occ:1.00 F1 A:747104 0.0 27.5 1.0 C2 A:747104 1.3 24.6 1.0 C3 A:747104 2.3 23.9 1.0 C1 A:747104 2.4 24.9 1.0 O1 A:747104 2.8 26.2 1.0 O6 A:G17 3.1 19.2 1.0 O4 A:U16 3.3 31.5 1.0 C6 A:G17 3.6 20.4 1.0 C4 A:747104 3.6 24.9 1.0 C A:747104 3.7 24.1 1.0 C4 A:U16 4.0 29.3 1.0 C5 A:G17 4.0 21.9 1.0 N7 A:G17 4.1 19.9 1.0 C5 A:747104 4.2 23.9 1.0 O2' A:G22 4.3 17.9 1.0 N1 A:G17 4.4 20.7 1.0 N3 A:U16 4.6 30.8 1.0 F A:747104 4.7 24.9 1.0 C5 A:U16 4.7 27.5 1.0 C6 A:747104 4.8 25.6 1.0 O6 A:G38 4.9 28.9 1.0

Fluorine binding site 4 out of 4 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ A:F104 b:24.9 occ:1.00 F A:747104 0.0 24.9 1.0 C A:747104 1.3 24.1 1.0 C1 A:747104 2.3 24.9 1.0 C5 A:747104 2.4 23.9 1.0 O1 A:747104 2.7 26.2 1.0 C2' A:U16 3.5 23.3 1.0 C8 A:G17 3.5 18.4 1.0 O4' A:G17 3.5 17.2 1.0 N1 A:U16 3.5 28.3 1.0 O5' A:G17 3.6 19.4 1.0 C3' A:U16 3.6 22.6 1.0 N9 A:G17 3.6 18.5 1.0 C2 A:747104 3.6 24.6 1.0 C2 A:U16 3.6 30.9 1.0 C4 A:747104 3.7 24.9 1.0 C6 A:U16 3.7 27.0 1.0 C5' A:G17 3.8 19.2 1.0 N7 A:G17 3.8 19.9 1.0 N3 A:U16 3.9 30.8 1.0 OP2 A:G17 3.9 22.6 1.0 C5 A:U16 3.9 27.5 1.0 C4 A:U16 4.0 29.3 1.0 C4 A:G17 4.1 23.0 1.0 C1' A:G17 4.1 16.8 1.0 C1' A:U16 4.1 25.9 1.0 C3 A:747104 4.1 23.9 1.0 O2 A:U16 4.2 28.7 1.0 C5 A:G17 4.2 21.9 1.0 O3' A:U16 4.2 22.1 1.0 P A:G17 4.2 21.0 1.0 C4' A:G17 4.3 17.8 1.0 C2' A:G17 4.6 16.9 1.0 O2' A:U16 4.7 27.6 1.0 F1 A:747104 4.7 27.5 1.0 O4 A:U16 4.8 31.5 1.0 O4' A:U16 4.8 27.5 1.0 C4' A:U16 4.8 24.5 1.0 N3 A:G17 4.8 21.6 1.0 N13 A:747104 4.9 25.4 1.0

L.F.M.Passalacqua, A.R.Ferre-D'amare. Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho To Be Published.