Fluorine in PDB 8fgu: Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Enzymatic activity of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
All present enzymatic activity of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine:
1.14.13.39;
Protein crystallography data
The structure of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine, PDB code: 8fgu
was solved by
H.Li,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.95 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.869,
153.859,
108.933,
90,
90.65,
90
|
R / Rfree (%)
|
20.3 /
25.2
|
Other elements in 8fgu:
The structure of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Fluorine atom in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
(pdb code 8fgu). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the
Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine, PDB code: 8fgu:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 1 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F503
b:67.5
occ:1.00
|
F08
|
A:XVA503
|
0.0
|
67.5
|
1.0
|
C07
|
A:XVA503
|
1.4
|
71.7
|
1.0
|
F09
|
A:XVA503
|
2.2
|
77.1
|
1.0
|
C04
|
A:XVA503
|
2.3
|
61.2
|
1.0
|
C05
|
A:XVA503
|
2.8
|
62.1
|
1.0
|
CD1
|
A:PHE353
|
3.2
|
52.9
|
1.0
|
O
|
A:PHE353
|
3.3
|
56.5
|
1.0
|
C03
|
A:XVA503
|
3.4
|
53.5
|
1.0
|
CE1
|
A:PHE353
|
3.4
|
55.6
|
1.0
|
O
|
A:PRO334
|
3.5
|
61.2
|
1.0
|
CA
|
A:SER354
|
3.7
|
46.7
|
1.0
|
CG2
|
A:VAL336
|
3.8
|
49.0
|
1.0
|
C
|
A:PHE353
|
3.9
|
60.4
|
1.0
|
N
|
A:VAL336
|
3.9
|
61.1
|
1.0
|
N
|
A:SER354
|
4.0
|
53.7
|
1.0
|
N
|
A:GLY355
|
4.1
|
54.4
|
1.0
|
C06
|
A:XVA503
|
4.1
|
58.9
|
1.0
|
C
|
A:PRO334
|
4.1
|
55.2
|
1.0
|
C
|
A:SER354
|
4.2
|
51.2
|
1.0
|
CB
|
A:VAL336
|
4.2
|
56.8
|
1.0
|
CA
|
A:ALA335
|
4.4
|
56.9
|
1.0
|
CG
|
A:PHE353
|
4.4
|
58.3
|
1.0
|
N
|
A:ALA335
|
4.5
|
51.8
|
1.0
|
C1C
|
A:HEM501
|
4.5
|
52.7
|
1.0
|
C02
|
A:XVA503
|
4.5
|
53.7
|
1.0
|
NC
|
A:HEM501
|
4.6
|
57.2
|
1.0
|
C
|
A:ALA335
|
4.7
|
59.9
|
1.0
|
C2C
|
A:HEM501
|
4.7
|
59.2
|
1.0
|
CZ
|
A:PHE353
|
4.7
|
44.1
|
1.0
|
C4C
|
A:HEM501
|
4.7
|
65.2
|
1.0
|
CA
|
A:VAL336
|
4.7
|
60.9
|
1.0
|
C3C
|
A:HEM501
|
4.7
|
60.4
|
1.0
|
N01
|
A:XVA503
|
4.8
|
49.5
|
1.0
|
CB
|
A:SER354
|
4.8
|
52.2
|
1.0
|
CB
|
A:PRO334
|
4.9
|
43.1
|
1.0
|
CB
|
A:PHE353
|
5.0
|
50.7
|
1.0
|
CHC
|
A:HEM501
|
5.0
|
52.0
|
1.0
|
|
Fluorine binding site 2 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 2 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F503
b:77.1
occ:1.00
|
F09
|
A:XVA503
|
0.0
|
77.1
|
1.0
|
C07
|
A:XVA503
|
1.4
|
71.7
|
1.0
|
F08
|
A:XVA503
|
2.2
|
67.5
|
1.0
|
C04
|
A:XVA503
|
2.3
|
61.2
|
1.0
|
N
|
A:GLY355
|
2.7
|
54.4
|
1.0
|
C03
|
A:XVA503
|
2.7
|
53.5
|
1.0
|
CHC
|
A:HEM501
|
3.1
|
52.0
|
1.0
|
C1C
|
A:HEM501
|
3.1
|
52.7
|
1.0
|
C
|
A:SER354
|
3.2
|
51.2
|
1.0
|
CA
|
A:GLY355
|
3.3
|
52.3
|
1.0
|
C2C
|
A:HEM501
|
3.5
|
59.2
|
1.0
|
CA
|
A:SER354
|
3.6
|
46.7
|
1.0
|
C05
|
A:XVA503
|
3.6
|
62.1
|
1.0
|
C4B
|
A:HEM501
|
3.6
|
54.2
|
1.0
|
NC
|
A:HEM501
|
3.7
|
57.2
|
1.0
|
CMC
|
A:HEM501
|
3.9
|
42.0
|
1.0
|
O
|
A:SER354
|
3.9
|
55.1
|
1.0
|
O
|
A:PRO334
|
4.0
|
61.2
|
1.0
|
NB
|
A:HEM501
|
4.1
|
55.6
|
1.0
|
C02
|
A:XVA503
|
4.1
|
53.7
|
1.0
|
C3C
|
A:HEM501
|
4.2
|
60.4
|
1.0
|
N
|
A:SER354
|
4.2
|
53.7
|
1.0
|
C
|
A:GLY355
|
4.2
|
48.7
|
1.0
|
C4C
|
A:HEM501
|
4.3
|
65.2
|
1.0
|
CD1
|
A:PHE353
|
4.4
|
52.9
|
1.0
|
N
|
A:TRP356
|
4.5
|
47.4
|
1.0
|
C3B
|
A:HEM501
|
4.6
|
53.4
|
1.0
|
O
|
A:PHE353
|
4.7
|
56.5
|
1.0
|
FE
|
A:HEM501
|
4.7
|
47.8
|
1.0
|
C
|
A:PHE353
|
4.7
|
60.4
|
1.0
|
C06
|
A:XVA503
|
4.7
|
58.9
|
1.0
|
CG
|
A:PRO334
|
4.8
|
44.2
|
1.0
|
CE1
|
A:PHE353
|
4.8
|
55.6
|
1.0
|
N01
|
A:XVA503
|
4.9
|
49.5
|
1.0
|
CB
|
A:SER354
|
4.9
|
52.2
|
1.0
|
N02
|
A:XVA503
|
4.9
|
48.8
|
1.0
|
C
|
A:PRO334
|
5.0
|
55.2
|
1.0
|
|
Fluorine binding site 3 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 3 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F503
b:85.8
occ:1.00
|
F12
|
A:XVA503
|
0.0
|
85.8
|
1.0
|
C12
|
A:XVA503
|
1.3
|
86.9
|
1.0
|
C13
|
A:XVA503
|
2.4
|
85.4
|
1.0
|
C11
|
A:XVA503
|
2.4
|
82.5
|
1.0
|
F13
|
A:XVA503
|
2.7
|
83.6
|
1.0
|
C22
|
A:XVA503
|
2.9
|
78.5
|
1.0
|
C21
|
A:XVA503
|
3.0
|
67.0
|
1.0
|
O2D
|
A:HEM501
|
3.3
|
88.7
|
1.0
|
CG2
|
A:VAL336
|
3.4
|
49.0
|
1.0
|
CBD
|
A:HEM501
|
3.4
|
79.6
|
1.0
|
CGD
|
A:HEM501
|
3.6
|
87.3
|
1.0
|
C14
|
A:XVA503
|
3.6
|
85.8
|
1.0
|
C16
|
A:XVA503
|
3.6
|
84.8
|
1.0
|
O2A
|
A:HEM501
|
4.0
|
88.9
|
1.0
|
C15
|
A:XVA503
|
4.1
|
85.7
|
1.0
|
C06
|
A:XVA503
|
4.2
|
58.9
|
1.0
|
C05
|
A:XVA503
|
4.4
|
62.1
|
1.0
|
O1D
|
A:HEM501
|
4.5
|
94.1
|
1.0
|
CG1
|
A:VAL336
|
4.6
|
54.5
|
1.0
|
CB
|
A:VAL336
|
4.6
|
56.8
|
1.0
|
CGA
|
A:HEM501
|
4.7
|
89.5
|
1.0
|
CBA
|
A:HEM501
|
4.7
|
84.0
|
1.0
|
CAD
|
A:HEM501
|
4.7
|
70.6
|
1.0
|
C3D
|
A:HEM501
|
4.8
|
64.7
|
1.0
|
CHA
|
A:HEM501
|
4.9
|
62.9
|
1.0
|
C4D
|
A:HEM501
|
4.9
|
63.8
|
1.0
|
|
Fluorine binding site 4 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 4 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F503
b:83.6
occ:1.00
|
F13
|
A:XVA503
|
0.0
|
83.6
|
1.0
|
C13
|
A:XVA503
|
1.3
|
85.4
|
1.0
|
C12
|
A:XVA503
|
2.4
|
86.9
|
1.0
|
C14
|
A:XVA503
|
2.4
|
85.8
|
1.0
|
O2D
|
A:HEM501
|
2.5
|
88.7
|
1.0
|
F12
|
A:XVA503
|
2.7
|
85.8
|
1.0
|
CGD
|
A:HEM501
|
3.6
|
87.3
|
1.0
|
C11
|
A:XVA503
|
3.6
|
82.5
|
1.0
|
C15
|
A:XVA503
|
3.6
|
85.7
|
1.0
|
O2A
|
A:HEM501
|
3.8
|
88.9
|
1.0
|
C16
|
A:XVA503
|
4.1
|
84.8
|
1.0
|
CBD
|
A:HEM501
|
4.3
|
79.6
|
1.0
|
O1D
|
A:HEM501
|
4.4
|
94.1
|
1.0
|
CE1
|
A:TYR475
|
4.7
|
70.7
|
1.0
|
OH
|
A:TYR475
|
4.8
|
73.8
|
1.0
|
C22
|
A:XVA503
|
4.9
|
78.5
|
1.0
|
C23
|
A:XVA503
|
4.9
|
82.9
|
1.0
|
CGA
|
A:HEM501
|
4.9
|
89.5
|
1.0
|
|
Fluorine binding site 5 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 5 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F503
b:53.0
occ:1.00
|
F08
|
B:XVA503
|
0.0
|
53.0
|
1.0
|
C07
|
B:XVA503
|
1.4
|
50.0
|
1.0
|
F09
|
B:XVA503
|
2.2
|
62.7
|
1.0
|
C04
|
B:XVA503
|
2.3
|
43.6
|
1.0
|
C05
|
B:XVA503
|
2.8
|
39.0
|
1.0
|
O
|
B:PHE353
|
3.3
|
34.4
|
1.0
|
CD1
|
B:PHE353
|
3.4
|
43.5
|
1.0
|
CE1
|
B:PHE353
|
3.4
|
36.6
|
1.0
|
O
|
B:PRO334
|
3.4
|
33.6
|
1.0
|
C03
|
B:XVA503
|
3.5
|
30.0
|
1.0
|
CG2
|
B:VAL336
|
3.6
|
37.3
|
1.0
|
N
|
B:VAL336
|
3.8
|
25.7
|
1.0
|
CA
|
B:SER354
|
3.8
|
22.8
|
1.0
|
C
|
B:PHE353
|
4.0
|
31.1
|
1.0
|
C06
|
B:XVA503
|
4.1
|
47.5
|
1.0
|
C
|
B:PRO334
|
4.1
|
28.1
|
1.0
|
CB
|
B:VAL336
|
4.1
|
29.0
|
1.0
|
N
|
B:SER354
|
4.2
|
28.9
|
1.0
|
N
|
B:GLY355
|
4.2
|
37.5
|
1.0
|
C
|
B:SER354
|
4.3
|
29.9
|
1.0
|
CA
|
B:ALA335
|
4.4
|
26.7
|
1.0
|
N
|
B:ALA335
|
4.4
|
31.0
|
1.0
|
C
|
B:ALA335
|
4.6
|
27.9
|
1.0
|
C1C
|
B:HEM501
|
4.6
|
31.4
|
1.0
|
NC
|
B:HEM501
|
4.6
|
30.9
|
1.0
|
CA
|
B:VAL336
|
4.6
|
18.8
|
1.0
|
C02
|
B:XVA503
|
4.6
|
35.6
|
1.0
|
CG
|
B:PHE353
|
4.6
|
36.2
|
1.0
|
CZ
|
B:PHE353
|
4.7
|
32.3
|
1.0
|
C4C
|
B:HEM501
|
4.7
|
32.7
|
1.0
|
C2C
|
B:HEM501
|
4.7
|
41.5
|
1.0
|
C3C
|
B:HEM501
|
4.8
|
39.8
|
1.0
|
N01
|
B:XVA503
|
4.8
|
36.6
|
1.0
|
CB
|
B:PRO334
|
4.8
|
24.5
|
1.0
|
|
Fluorine binding site 6 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 6 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F503
b:62.7
occ:1.00
|
F09
|
B:XVA503
|
0.0
|
62.7
|
1.0
|
C07
|
B:XVA503
|
1.4
|
50.0
|
1.0
|
F08
|
B:XVA503
|
2.2
|
53.0
|
1.0
|
C04
|
B:XVA503
|
2.4
|
43.6
|
1.0
|
N
|
B:GLY355
|
2.5
|
37.5
|
1.0
|
C03
|
B:XVA503
|
2.7
|
30.0
|
1.0
|
C
|
B:SER354
|
3.0
|
29.9
|
1.0
|
CA
|
B:GLY355
|
3.1
|
34.8
|
1.0
|
CHC
|
B:HEM501
|
3.4
|
33.0
|
1.0
|
CA
|
B:SER354
|
3.4
|
22.8
|
1.0
|
C1C
|
B:HEM501
|
3.4
|
31.4
|
1.0
|
O
|
B:PRO334
|
3.5
|
33.6
|
1.0
|
C05
|
B:XVA503
|
3.6
|
39.0
|
1.0
|
C2C
|
B:HEM501
|
3.7
|
41.5
|
1.0
|
O
|
B:SER354
|
3.8
|
28.9
|
1.0
|
C4B
|
B:HEM501
|
3.9
|
34.1
|
1.0
|
NC
|
B:HEM501
|
4.0
|
30.9
|
1.0
|
CMC
|
B:HEM501
|
4.0
|
32.2
|
1.0
|
C
|
B:GLY355
|
4.1
|
36.0
|
1.0
|
N
|
B:SER354
|
4.1
|
28.9
|
1.0
|
C02
|
B:XVA503
|
4.1
|
35.6
|
1.0
|
O
|
B:PHE353
|
4.4
|
34.4
|
1.0
|
NB
|
B:HEM501
|
4.4
|
33.6
|
1.0
|
C3C
|
B:HEM501
|
4.4
|
39.8
|
1.0
|
CG
|
B:PRO334
|
4.4
|
27.2
|
1.0
|
N
|
B:TRP356
|
4.5
|
32.3
|
1.0
|
CD1
|
B:PHE353
|
4.5
|
43.5
|
1.0
|
C
|
B:PRO334
|
4.5
|
28.1
|
1.0
|
C
|
B:PHE353
|
4.6
|
31.1
|
1.0
|
C4C
|
B:HEM501
|
4.6
|
32.7
|
1.0
|
CB
|
B:SER354
|
4.7
|
27.9
|
1.0
|
C3B
|
B:HEM501
|
4.7
|
29.0
|
1.0
|
C06
|
B:XVA503
|
4.7
|
47.5
|
1.0
|
CB
|
B:PRO334
|
4.8
|
24.5
|
1.0
|
CE1
|
B:PHE353
|
4.9
|
36.6
|
1.0
|
O
|
B:GLY355
|
4.9
|
34.7
|
1.0
|
N01
|
B:XVA503
|
4.9
|
36.6
|
1.0
|
FE
|
B:HEM501
|
5.0
|
30.7
|
1.0
|
|
Fluorine binding site 7 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 7 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F503
b:95.8
occ:1.00
|
F12
|
B:XVA503
|
0.0
|
95.8
|
1.0
|
C12
|
B:XVA503
|
1.3
|
83.7
|
1.0
|
C13
|
B:XVA503
|
2.3
|
89.5
|
1.0
|
C11
|
B:XVA503
|
2.4
|
66.3
|
1.0
|
F13
|
B:XVA503
|
2.7
|
100.9
|
1.0
|
C22
|
B:XVA503
|
2.9
|
48.2
|
1.0
|
C21
|
B:XVA503
|
3.0
|
40.4
|
1.0
|
CG2
|
B:VAL336
|
3.0
|
37.3
|
1.0
|
CBD
|
B:HEM501
|
3.2
|
49.1
|
1.0
|
C14
|
B:XVA503
|
3.6
|
77.7
|
1.0
|
C16
|
B:XVA503
|
3.6
|
78.5
|
1.0
|
O2D
|
B:HEM501
|
3.7
|
88.5
|
1.0
|
CGD
|
B:HEM501
|
3.9
|
72.5
|
1.0
|
C05
|
B:XVA503
|
3.9
|
39.0
|
1.0
|
C06
|
B:XVA503
|
4.0
|
47.5
|
1.0
|
CG1
|
B:VAL336
|
4.1
|
29.1
|
1.0
|
C15
|
B:XVA503
|
4.1
|
82.5
|
1.0
|
CB
|
B:VAL336
|
4.1
|
29.0
|
1.0
|
C3D
|
B:HEM501
|
4.3
|
33.8
|
1.0
|
O
|
B:HOH764
|
4.4
|
37.5
|
1.0
|
CAD
|
B:HEM501
|
4.4
|
37.7
|
1.0
|
C4D
|
B:HEM501
|
4.4
|
39.7
|
1.0
|
CHA
|
B:HEM501
|
4.6
|
32.8
|
1.0
|
SD
|
B:MET339
|
4.8
|
35.5
|
1.0
|
O2A
|
B:HEM501
|
4.8
|
78.4
|
1.0
|
C2D
|
B:HEM501
|
4.8
|
33.8
|
1.0
|
|
Fluorine binding site 8 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 8 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F503
b:100.9
occ:1.00
|
F13
|
B:XVA503
|
0.0
|
100.9
|
1.0
|
C13
|
B:XVA503
|
1.3
|
89.5
|
1.0
|
C14
|
B:XVA503
|
2.4
|
77.7
|
1.0
|
C12
|
B:XVA503
|
2.4
|
83.7
|
1.0
|
F12
|
B:XVA503
|
2.7
|
95.8
|
1.0
|
O2D
|
B:HEM501
|
2.8
|
88.5
|
1.0
|
CGD
|
B:HEM501
|
3.0
|
72.5
|
1.0
|
CBD
|
B:HEM501
|
3.2
|
49.1
|
1.0
|
C15
|
B:XVA503
|
3.6
|
82.5
|
1.0
|
C11
|
B:XVA503
|
3.7
|
66.3
|
1.0
|
O
|
B:HOH764
|
3.7
|
37.5
|
1.0
|
O1D
|
B:HEM501
|
3.8
|
71.6
|
1.0
|
CE1
|
B:TYR475
|
4.0
|
46.8
|
1.0
|
C16
|
B:XVA503
|
4.1
|
78.5
|
1.0
|
SD
|
B:MET339
|
4.1
|
35.5
|
1.0
|
OH
|
B:TYR475
|
4.4
|
70.2
|
1.0
|
CG1
|
B:VAL336
|
4.7
|
29.1
|
1.0
|
CZ
|
B:TYR475
|
4.7
|
57.9
|
1.0
|
CAD
|
B:HEM501
|
4.7
|
37.7
|
1.0
|
CG
|
B:MET339
|
4.8
|
31.5
|
1.0
|
C23
|
B:XVA503
|
4.9
|
80.8
|
1.0
|
CG2
|
B:VAL336
|
4.9
|
37.3
|
1.0
|
CD1
|
B:TYR475
|
4.9
|
39.5
|
1.0
|
C22
|
B:XVA503
|
4.9
|
48.2
|
1.0
|
O2A
|
B:HEM501
|
5.0
|
78.4
|
1.0
|
|
Fluorine binding site 9 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 9 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F503
b:62.8
occ:1.00
|
F08
|
C:XVA503
|
0.0
|
62.8
|
1.0
|
C07
|
C:XVA503
|
1.4
|
67.0
|
1.0
|
F09
|
C:XVA503
|
2.3
|
74.2
|
1.0
|
C04
|
C:XVA503
|
2.3
|
61.2
|
1.0
|
C05
|
C:XVA503
|
2.7
|
63.4
|
1.0
|
CD1
|
C:PHE353
|
3.3
|
48.5
|
1.0
|
CE1
|
C:PHE353
|
3.4
|
53.0
|
1.0
|
O
|
C:PHE353
|
3.4
|
52.3
|
1.0
|
C03
|
C:XVA503
|
3.5
|
54.7
|
1.0
|
O
|
C:PRO334
|
3.5
|
45.7
|
1.0
|
N
|
C:VAL336
|
3.6
|
60.8
|
1.0
|
CG2
|
C:VAL336
|
3.7
|
51.5
|
1.0
|
CA
|
C:SER354
|
3.9
|
54.4
|
1.0
|
C
|
C:PHE353
|
4.0
|
51.9
|
1.0
|
CB
|
C:VAL336
|
4.0
|
53.5
|
1.0
|
C06
|
C:XVA503
|
4.1
|
65.9
|
1.0
|
C
|
C:PRO334
|
4.1
|
41.8
|
1.0
|
N
|
C:SER354
|
4.2
|
51.2
|
1.0
|
CA
|
C:ALA335
|
4.2
|
48.5
|
1.0
|
N
|
C:GLY355
|
4.3
|
43.3
|
1.0
|
C
|
C:SER354
|
4.3
|
45.9
|
1.0
|
N
|
C:ALA335
|
4.4
|
42.0
|
1.0
|
C
|
C:ALA335
|
4.5
|
51.0
|
1.0
|
CA
|
C:VAL336
|
4.5
|
49.4
|
1.0
|
CG
|
C:PHE353
|
4.5
|
57.3
|
1.0
|
C02
|
C:XVA503
|
4.6
|
53.3
|
1.0
|
CZ
|
C:PHE353
|
4.6
|
46.1
|
1.0
|
NC
|
C:HEM501
|
4.7
|
48.0
|
1.0
|
C1C
|
C:HEM501
|
4.7
|
45.6
|
1.0
|
C4C
|
C:HEM501
|
4.8
|
46.3
|
1.0
|
C2C
|
C:HEM501
|
4.8
|
50.1
|
1.0
|
N01
|
C:XVA503
|
4.8
|
58.0
|
1.0
|
CB
|
C:PRO334
|
4.8
|
35.2
|
1.0
|
C3C
|
C:HEM501
|
4.9
|
41.5
|
1.0
|
|
Fluorine binding site 10 out
of 16 in 8fgu
Go back to
Fluorine Binding Sites List in 8fgu
Fluorine binding site 10 out
of 16 in the Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structure of Human Endothelial Nitric Oxide Synthase Heme Domain in Complex with 4-(Difluoromethyl)-6-(5-(2-(Dimethylamino)Ethyl)-2,3- Difluorophenethyl)Pyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F503
b:74.2
occ:1.00
|
F09
|
C:XVA503
|
0.0
|
74.2
|
1.0
|
C07
|
C:XVA503
|
1.4
|
67.0
|
1.0
|
F08
|
C:XVA503
|
2.3
|
62.8
|
1.0
|
C04
|
C:XVA503
|
2.3
|
61.2
|
1.0
|
N
|
C:GLY355
|
2.5
|
43.3
|
1.0
|
C03
|
C:XVA503
|
2.7
|
54.7
|
1.0
|
C
|
C:SER354
|
3.0
|
45.9
|
1.0
|
CA
|
C:GLY355
|
3.2
|
41.4
|
1.0
|
CA
|
C:SER354
|
3.4
|
54.4
|
1.0
|
CHC
|
C:HEM501
|
3.5
|
47.5
|
1.0
|
C1C
|
C:HEM501
|
3.5
|
45.6
|
1.0
|
O
|
C:PRO334
|
3.5
|
45.7
|
1.0
|
C05
|
C:XVA503
|
3.6
|
63.4
|
1.0
|
O
|
C:SER354
|
3.7
|
51.2
|
1.0
|
C2C
|
C:HEM501
|
3.8
|
50.1
|
1.0
|
C4B
|
C:HEM501
|
4.0
|
48.0
|
1.0
|
CMC
|
C:HEM501
|
4.0
|
37.2
|
1.0
|
N
|
C:SER354
|
4.1
|
51.2
|
1.0
|
NC
|
C:HEM501
|
4.1
|
48.0
|
1.0
|
C02
|
C:XVA503
|
4.1
|
53.3
|
1.0
|
C
|
C:GLY355
|
4.2
|
48.2
|
1.0
|
C3C
|
C:HEM501
|
4.4
|
41.5
|
1.0
|
CD1
|
C:PHE353
|
4.4
|
48.5
|
1.0
|
CG
|
C:PRO334
|
4.4
|
44.9
|
1.0
|
O
|
C:PHE353
|
4.5
|
52.3
|
1.0
|
C
|
C:PRO334
|
4.5
|
41.8
|
1.0
|
NB
|
C:HEM501
|
4.5
|
45.0
|
1.0
|
N
|
C:TRP356
|
4.5
|
45.5
|
1.0
|
C
|
C:PHE353
|
4.6
|
51.9
|
1.0
|
C4C
|
C:HEM501
|
4.6
|
46.3
|
1.0
|
CB
|
C:SER354
|
4.7
|
51.9
|
1.0
|
C06
|
C:XVA503
|
4.7
|
65.9
|
1.0
|
CB
|
C:PRO334
|
4.8
|
35.2
|
1.0
|
C3B
|
C:HEM501
|
4.8
|
46.9
|
1.0
|
N01
|
C:XVA503
|
4.9
|
58.0
|
1.0
|
CE1
|
C:PHE353
|
4.9
|
53.0
|
1.0
|
N02
|
C:XVA503
|
4.9
|
46.2
|
1.0
|
O
|
C:GLY355
|
5.0
|
42.2
|
1.0
|
|
Reference:
D.Vasu,
H.T.Do,
H.Li,
C.D.Hardy,
A.Awasthi,
T.L.Poulos,
R.B.Silverman.
Potent, Selective, and Membrane Permeable 2-Amino-4-Substituted Pyridine-Based Neuronal Nitric Oxide Synthase Inhibitors. J.Med.Chem. V. 66 9934 2023.
ISSN: ISSN 0022-2623
PubMed: 37433128
DOI: 10.1021/ACS.JMEDCHEM.3C00782
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