Atomistry » Fluorine » PDB 8fgl-8fln » 8fhx
Atomistry »
  Fluorine »
    PDB 8fgl-8fln »
      8fhx »

Fluorine in PDB 8fhx: Structure of Lettuce Aptamer Bound to Dfhbi-1T

Protein crystallography data

The structure of Structure of Lettuce Aptamer Bound to Dfhbi-1T, PDB code: 8fhx was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.61 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.015, 44.417, 118.921, 90, 90, 90
R / Rfree (%) 22.5 / 26.8

Other elements in 8fhx:

The structure of Structure of Lettuce Aptamer Bound to Dfhbi-1T also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Potassium (K) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Lettuce Aptamer Bound to Dfhbi-1T (pdb code 8fhx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the Structure of Lettuce Aptamer Bound to Dfhbi-1T, PDB code: 8fhx:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5;

Fluorine binding site 1 out of 5 in 8fhx

Go back to Fluorine Binding Sites List in 8fhx
Fluorine binding site 1 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F107

b:42.3
occ:1.00
F8 A:2ZY107 0.0 42.3 1.0
C6 A:2ZY107 1.4 40.9 1.0
C1 A:2ZY107 2.4 40.4 1.0
C5 A:2ZY107 2.4 36.4 1.0
O9 A:2ZY107 2.8 33.9 1.0
N6 A:DA11 3.0 34.3 1.0
N3 A:DC17 3.1 40.0 1.0
C4 A:DC17 3.2 38.2 1.0
C2 A:DC17 3.3 47.4 1.0
N1 A:DG18 3.4 35.9 1.0
C5 A:DC17 3.4 39.2 1.0
N1 A:DC17 3.6 46.9 1.0
C2 A:DG18 3.6 38.5 1.0
C6 A:DC17 3.6 41.8 1.0
C2 A:2ZY107 3.6 40.1 1.0
C4 A:2ZY107 3.6 40.7 1.0
N4 A:DC17 3.8 37.6 1.0
C6 A:DG18 3.8 34.0 1.0
N2 A:DG18 3.9 38.0 1.0
O2 A:DC17 4.0 55.9 1.0
N3 A:DG18 4.1 38.7 1.0
C3 A:2ZY107 4.1 39.9 1.0
C5 A:DG18 4.2 34.2 1.0
C2' A:DC17 4.2 51.4 1.0
O6 A:DG18 4.3 34.9 1.0
C4 A:DG18 4.3 35.3 1.0
C6 A:DA11 4.3 33.9 1.0
C1' A:DC17 4.5 50.1 1.0
F7 A:2ZY107 4.8 34.6 1.0
N7 A:DG10 4.8 34.6 1.0
K A:K102 4.9 38.0 1.0
C10 A:2ZY107 4.9 47.7 1.0
O6 A:DG10 4.9 32.2 1.0

Fluorine binding site 2 out of 5 in 8fhx

Go back to Fluorine Binding Sites List in 8fhx
Fluorine binding site 2 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F107

b:34.6
occ:1.00
F7 A:2ZY107 0.0 34.6 1.0
C4 A:2ZY107 1.4 40.7 1.0
C3 A:2ZY107 2.4 39.9 1.0
C5 A:2ZY107 2.4 36.4 1.0
O9 A:2ZY107 2.8 33.9 1.0
C2 A:DG25 3.0 34.2 1.0
N1 A:DG25 3.0 32.9 1.0
N2 A:DG44 3.0 35.0 1.0
C6 A:DG26 3.2 43.9 0.5
O6 A:DG26 3.2 43.3 0.5
O6 A:DG26 3.2 43.0 0.5
C6 A:DG26 3.3 44.0 0.5
C5 A:DG26 3.3 41.9 0.5
C5 A:DG26 3.4 42.2 0.5
N2 A:DG25 3.4 37.2 1.0
N3 A:DG25 3.4 36.2 1.0
C6 A:DG25 3.5 32.5 1.0
O6 A:DG18 3.5 34.9 1.0
N7 A:DG26 3.5 38.4 0.5
N7 A:DG26 3.5 38.6 0.5
C6 A:2ZY107 3.7 40.9 1.0
C2 A:2ZY107 3.7 40.1 1.0
C4 A:DG25 3.7 38.7 1.0
C5 A:DG25 3.8 35.2 1.0
K A:K102 3.8 38.0 1.0
N1 A:DG26 3.9 45.2 0.5
O A:HOH210 3.9 34.5 1.0
N1 A:DG26 4.0 45.4 0.5
C4 A:DG26 4.1 44.5 0.5
O6 A:DG25 4.1 31.8 1.0
C1 A:2ZY107 4.1 40.4 1.0
C4 A:DG26 4.2 44.7 0.5
C6 A:DG18 4.2 34.0 1.0
C2 A:DG44 4.3 39.5 1.0
C8 A:DG26 4.3 43.5 0.5
C8 A:DG26 4.3 43.7 0.5
O A:HOH214 4.5 32.8 1.0
N7 A:DG18 4.5 37.6 1.0
C2 A:DG26 4.5 46.9 0.5
N9 A:DG26 4.6 45.8 0.5
C5 A:DG18 4.7 34.2 1.0
N9 A:DG25 4.7 36.1 1.0
N3 A:DG26 4.7 47.1 0.5
N1 A:DG44 4.7 37.8 1.0
C2 A:DG26 4.7 46.9 0.5
N9 A:DG26 4.7 45.9 0.5
F8 A:2ZY107 4.8 42.3 1.0
N7 A:DG25 4.8 34.0 1.0
N12 A:2ZY107 4.8 43.5 1.0
N3 A:DG26 4.8 47.3 0.5
N4 A:DC17 4.9 37.6 1.0
C10 A:2ZY107 5.0 47.7 1.0

Fluorine binding site 3 out of 5 in 8fhx

Go back to Fluorine Binding Sites List in 8fhx
Fluorine binding site 3 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F107

b:100.7
occ:1.00
F20 A:2ZY107 0.0 100.7 1.0
C19 A:2ZY107 1.4 75.3 1.0
F22 A:2ZY107 2.2 62.5 1.0
F21 A:2ZY107 2.2 62.2 1.0
C16 A:2ZY107 2.4 61.1 1.0
N14 A:2ZY107 3.6 48.1 1.0
O18 A:2ZY107 4.3 54.9 1.0
C15 A:2ZY107 4.4 50.0 1.0
C13 A:2ZY107 4.7 43.6 1.0
O4' A:DC20 4.8 54.5 1.0
C6 A:DC20 4.9 45.1 1.0

Fluorine binding site 4 out of 5 in 8fhx

Go back to Fluorine Binding Sites List in 8fhx
Fluorine binding site 4 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F107

b:62.2
occ:1.00
F21 A:2ZY107 0.0 62.2 1.0
C19 A:2ZY107 1.4 75.3 1.0
F22 A:2ZY107 2.2 62.5 1.0
F20 A:2ZY107 2.2 100.7 1.0
C16 A:2ZY107 2.4 61.1 1.0
N14 A:2ZY107 2.7 48.1 1.0
O18 A:2ZY107 2.7 54.9 1.0
C15 A:2ZY107 2.9 50.0 1.0
C13 A:2ZY107 3.8 43.6 1.0
C5' A:DG19 4.0 48.9 1.0
C11 A:2ZY107 4.1 48.9 1.0
C4' A:DG19 4.3 44.2 1.0
C5 A:DC20 4.3 44.7 1.0
O4' A:DG19 4.5 37.8 1.0
N12 A:2ZY107 4.5 43.5 1.0
C6 A:DC20 4.6 45.1 1.0
OP1 A:DG19 4.6 65.2 1.0
C17 A:2ZY107 4.7 47.5 1.0
C8 A:DG18 4.8 40.1 1.0
C4 A:DC20 4.9 47.7 1.0
C1' A:DG18 4.9 38.4 1.0
C10 A:2ZY107 5.0 47.7 1.0

Fluorine binding site 5 out of 5 in 8fhx

Go back to Fluorine Binding Sites List in 8fhx
Fluorine binding site 5 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F107

b:62.5
occ:1.00
F22 A:2ZY107 0.0 62.5 1.0
C19 A:2ZY107 1.4 75.3 1.0
F20 A:2ZY107 2.2 100.7 1.0
F21 A:2ZY107 2.2 62.2 1.0
C16 A:2ZY107 2.4 61.1 1.0
N14 A:2ZY107 2.9 48.1 1.0
C5 A:DC20 3.0 44.7 1.0
C6 A:DC20 3.1 45.1 1.0
C4 A:DC20 3.3 47.7 1.0
N1 A:DC20 3.4 49.1 1.0
C13 A:2ZY107 3.4 43.6 1.0
C17 A:2ZY107 3.5 47.5 1.0
N3 A:DC20 3.6 50.4 1.0
C2 A:DC20 3.6 54.3 1.0
C15 A:2ZY107 3.9 50.0 1.0
N4 A:DC20 4.0 51.6 1.0
O4' A:DC20 4.1 54.5 1.0
C1' A:DC20 4.2 51.4 1.0
O18 A:2ZY107 4.4 54.9 1.0
O2 A:DC20 4.5 53.0 1.0
N12 A:2ZY107 4.6 43.5 1.0
C4' A:DG19 4.8 44.2 1.0
C11 A:2ZY107 4.8 48.9 1.0
O4' A:DG19 4.9 37.8 1.0

Reference:

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Lettuce Aptamer Bound to Dfhbi-1T To Be Published.
Page generated: Fri Aug 2 19:05:10 2024

Last articles

W in 6RUG
W in 6NYS
W in 5SUQ
W in 6QSF
W in 6QSE
W in 6HYB
W in 6OHM
W in 6N90
W in 6HY8
W in 6HY6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy