Fluorine in PDB 8fhz: Structure of Lettuce Aptamer Bound to Dfho
Protein crystallography data
The structure of Structure of Lettuce Aptamer Bound to Dfho, PDB code: 8fhz
was solved by
L.F.M.Passalacqua,
A.R.Ferre-D'amare,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
59.57 /
2.60
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
24.571,
42.288,
119.132,
90,
90,
90
|
R / Rfree (%)
|
21.4 /
26.5
|
Other elements in 8fhz:
The structure of Structure of Lettuce Aptamer Bound to Dfho also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Lettuce Aptamer Bound to Dfho
(pdb code 8fhz). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Structure of Lettuce Aptamer Bound to Dfho, PDB code: 8fhz:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 8fhz
Go back to
Fluorine Binding Sites List in 8fhz
Fluorine binding site 1 out
of 2 in the Structure of Lettuce Aptamer Bound to Dfho
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Lettuce Aptamer Bound to Dfho within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F107
b:52.8
occ:1.00
|
F1
|
A:747107
|
0.0
|
52.8
|
1.0
|
C2
|
A:747107
|
1.3
|
43.1
|
1.0
|
C3
|
A:747107
|
2.3
|
43.4
|
1.0
|
C1
|
A:747107
|
2.4
|
42.7
|
1.0
|
O
|
A:HOH210
|
2.7
|
43.2
|
1.0
|
K
|
A:K102
|
2.7
|
41.7
|
1.0
|
N2
|
A:DG44
|
2.8
|
49.6
|
1.0
|
O1
|
A:747107
|
2.8
|
43.2
|
1.0
|
O
|
A:HOH208
|
3.0
|
41.8
|
1.0
|
O6
|
A:DG26
|
3.3
|
48.8
|
1.0
|
C6
|
A:DG25
|
3.5
|
40.2
|
1.0
|
N1
|
A:DG25
|
3.6
|
40.2
|
1.0
|
C4
|
A:747107
|
3.6
|
49.9
|
1.0
|
C
|
A:747107
|
3.7
|
46.3
|
1.0
|
C6
|
A:DG26
|
3.7
|
52.2
|
1.0
|
O6
|
A:DG18
|
3.8
|
41.0
|
1.0
|
C5
|
A:DG25
|
3.8
|
40.5
|
1.0
|
O6
|
A:DG25
|
3.8
|
40.3
|
1.0
|
C2
|
A:DG25
|
4.0
|
40.6
|
1.0
|
C2
|
A:DG44
|
4.1
|
51.6
|
1.0
|
C4
|
A:DG25
|
4.1
|
40.8
|
1.0
|
C5
|
A:747107
|
4.2
|
46.3
|
1.0
|
C5
|
A:DG26
|
4.2
|
50.5
|
1.0
|
N3
|
A:DG25
|
4.3
|
41.0
|
1.0
|
N7
|
A:DG26
|
4.3
|
50.0
|
1.0
|
N4
|
A:DC17
|
4.5
|
45.5
|
1.0
|
N7
|
A:DG25
|
4.5
|
40.9
|
1.0
|
N1
|
A:DG26
|
4.5
|
53.7
|
1.0
|
C6
|
A:DG18
|
4.5
|
43.1
|
1.0
|
N1
|
A:DA11
|
4.6
|
45.1
|
1.0
|
N2
|
A:DG25
|
4.6
|
41.0
|
1.0
|
C6
|
A:747107
|
4.7
|
54.7
|
1.0
|
N1
|
A:DA43
|
4.7
|
49.5
|
1.0
|
N1
|
A:DG44
|
4.7
|
50.9
|
1.0
|
F
|
A:747107
|
4.7
|
44.6
|
1.0
|
N6
|
A:DA11
|
4.8
|
45.0
|
1.0
|
N9
|
A:DG25
|
4.9
|
41.5
|
1.0
|
N3
|
A:DG44
|
5.0
|
51.7
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 8fhz
Go back to
Fluorine Binding Sites List in 8fhz
Fluorine binding site 2 out
of 2 in the Structure of Lettuce Aptamer Bound to Dfho
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Lettuce Aptamer Bound to Dfho within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F107
b:44.6
occ:1.00
|
F
|
A:747107
|
0.0
|
44.6
|
1.0
|
C
|
A:747107
|
1.4
|
46.3
|
1.0
|
C1
|
A:747107
|
2.3
|
42.7
|
1.0
|
C5
|
A:747107
|
2.5
|
46.3
|
1.0
|
O1
|
A:747107
|
2.7
|
43.2
|
1.0
|
C2
|
A:DC17
|
3.0
|
51.6
|
1.0
|
N3
|
A:DC17
|
3.1
|
47.9
|
1.0
|
N1
|
A:DC17
|
3.2
|
54.8
|
1.0
|
O2
|
A:DC17
|
3.4
|
50.8
|
1.0
|
C4
|
A:DC17
|
3.4
|
46.4
|
1.0
|
C2
|
A:DG18
|
3.6
|
43.8
|
1.0
|
C6
|
A:DC17
|
3.6
|
54.9
|
1.0
|
N1
|
A:DG18
|
3.6
|
43.4
|
1.0
|
C2
|
A:747107
|
3.6
|
43.1
|
1.0
|
N6
|
A:DA11
|
3.7
|
45.0
|
1.0
|
C5
|
A:DC17
|
3.7
|
49.2
|
1.0
|
C4
|
A:747107
|
3.7
|
49.9
|
1.0
|
N3
|
A:DG18
|
3.7
|
44.1
|
1.0
|
C2'
|
A:DC17
|
3.7
|
60.0
|
1.0
|
C6
|
A:DG18
|
3.8
|
43.1
|
1.0
|
C4
|
A:DG18
|
3.8
|
43.0
|
1.0
|
C5
|
A:DG18
|
3.9
|
43.1
|
1.0
|
C1'
|
A:DC17
|
3.9
|
60.6
|
1.0
|
N2
|
A:DG18
|
4.1
|
45.2
|
1.0
|
C3
|
A:747107
|
4.1
|
43.4
|
1.0
|
N4
|
A:DC17
|
4.3
|
45.5
|
1.0
|
O6
|
A:DG18
|
4.4
|
41.0
|
1.0
|
N1
|
A:DG26
|
4.6
|
53.7
|
1.0
|
N9
|
A:DG18
|
4.6
|
45.9
|
1.0
|
N7
|
A:DG18
|
4.7
|
47.1
|
1.0
|
F1
|
A:747107
|
4.7
|
52.8
|
1.0
|
C5'
|
A:DG18
|
4.8
|
53.1
|
1.0
|
O4'
|
A:DG18
|
4.8
|
50.6
|
1.0
|
N2
|
A:DG26
|
4.9
|
50.1
|
1.0
|
C6
|
A:DA11
|
5.0
|
45.3
|
1.0
|
|
Reference:
L.F.M.Passalacqua,
A.R.Ferre-D'amare.
Structure of Lettuce Aptamer Bound to Dfho To Be Published.
Page generated: Fri Aug 2 19:05:10 2024
|