Fluorine in PDB 8flm: Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Other elements in 8flm:
The structure of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
(pdb code 8flm). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53, PDB code: 8flm:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 1 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F402
b:68.7
occ:1.00
|
F10
|
B:9IM402
|
0.0
|
68.7
|
1.0
|
C09
|
B:9IM402
|
1.4
|
51.1
|
1.0
|
C11
|
B:9IM402
|
2.4
|
46.8
|
1.0
|
C08
|
B:9IM402
|
2.4
|
44.9
|
1.0
|
H072
|
B:9IM402
|
2.4
|
53.3
|
1.0
|
HD2
|
B:HIS50
|
2.4
|
47.9
|
1.0
|
H171
|
B:9IM402
|
2.5
|
53.5
|
1.0
|
H111
|
B:9IM402
|
2.5
|
52.3
|
1.0
|
HA
|
B:HIS50
|
2.7
|
48.0
|
1.0
|
C07
|
B:9IM402
|
2.8
|
47.9
|
1.0
|
H211
|
B:9IM402
|
3.2
|
52.5
|
1.0
|
CD2
|
B:HIS50
|
3.2
|
44.7
|
1.0
|
C17
|
B:9IM402
|
3.3
|
60.1
|
1.0
|
HB2
|
B:HIS50
|
3.5
|
49.2
|
1.0
|
CA
|
B:HIS50
|
3.6
|
39.3
|
1.0
|
H071
|
B:9IM402
|
3.6
|
52.8
|
1.0
|
C12
|
B:9IM402
|
3.6
|
53.5
|
1.0
|
C14
|
B:9IM402
|
3.6
|
51.5
|
1.0
|
N06
|
B:9IM402
|
3.7
|
48.6
|
1.0
|
OG
|
B:SER53
|
3.8
|
53.8
|
1.0
|
CB
|
B:HIS50
|
3.8
|
39.7
|
1.0
|
C16
|
B:9IM402
|
3.8
|
59.8
|
1.0
|
CG
|
B:HIS50
|
3.8
|
46.0
|
1.0
|
HG
|
B:SER53
|
3.9
|
52.3
|
1.0
|
HB3
|
B:SER53
|
3.9
|
51.1
|
1.0
|
N21
|
B:9IM402
|
4.0
|
51.0
|
1.0
|
F25
|
B:9IM402
|
4.0
|
55.9
|
1.0
|
C24
|
B:9IM402
|
4.0
|
37.5
|
1.0
|
C13
|
B:9IM402
|
4.1
|
53.2
|
1.0
|
N
|
B:HIS50
|
4.2
|
48.1
|
1.0
|
CB
|
B:SER53
|
4.3
|
52.9
|
1.0
|
C26
|
B:9IM402
|
4.3
|
48.5
|
1.0
|
H121
|
B:9IM402
|
4.4
|
54.1
|
1.0
|
NE2
|
B:HIS50
|
4.4
|
48.7
|
1.0
|
H261
|
B:9IM402
|
4.5
|
53.0
|
1.0
|
C23
|
B:9IM402
|
4.5
|
39.3
|
1.0
|
C18
|
B:9IM402
|
4.5
|
55.2
|
1.0
|
HD2
|
A:HIS50
|
4.5
|
41.2
|
1.0
|
HB2
|
B:SER53
|
4.6
|
51.9
|
1.0
|
O
|
B:LEU49
|
4.6
|
53.3
|
1.0
|
H
|
B:HIS50
|
4.6
|
49.8
|
1.0
|
C
|
B:HIS50
|
4.7
|
49.1
|
1.0
|
C
|
B:LEU49
|
4.7
|
54.3
|
1.0
|
O
|
B:HIS50
|
4.7
|
61.7
|
1.0
|
C19
|
B:9IM402
|
4.7
|
54.1
|
1.0
|
HB3
|
B:HIS50
|
4.8
|
49.1
|
1.0
|
C22
|
B:9IM402
|
4.9
|
49.4
|
1.0
|
C27
|
B:9IM402
|
5.0
|
60.9
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 2 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F402
b:55.9
occ:1.00
|
F25
|
B:9IM402
|
0.0
|
55.9
|
1.0
|
C24
|
B:9IM402
|
1.4
|
37.5
|
1.0
|
C23
|
B:9IM402
|
2.4
|
39.3
|
1.0
|
C26
|
B:9IM402
|
2.4
|
48.5
|
1.0
|
H261
|
B:9IM402
|
2.6
|
53.0
|
1.0
|
H111
|
B:9IM402
|
2.6
|
52.3
|
1.0
|
H222
|
B:9IM402
|
2.8
|
53.9
|
1.0
|
N21
|
B:9IM402
|
2.8
|
51.0
|
1.0
|
C22
|
B:9IM402
|
2.8
|
49.4
|
1.0
|
H211
|
B:9IM402
|
2.9
|
52.5
|
1.0
|
C11
|
B:9IM402
|
3.0
|
46.8
|
1.0
|
H121
|
B:9IM402
|
3.4
|
54.1
|
1.0
|
C12
|
B:9IM402
|
3.5
|
53.5
|
1.0
|
C19
|
B:9IM402
|
3.5
|
54.1
|
1.0
|
H171
|
B:9IM402
|
3.5
|
53.5
|
1.0
|
C27
|
B:9IM402
|
3.6
|
60.9
|
1.0
|
C30
|
B:9IM402
|
3.6
|
57.9
|
1.0
|
C09
|
B:9IM402
|
3.7
|
51.1
|
1.0
|
H221
|
B:9IM402
|
3.7
|
52.4
|
1.0
|
O20
|
B:9IM402
|
3.9
|
46.6
|
1.0
|
F10
|
B:9IM402
|
4.0
|
68.7
|
1.0
|
C29
|
B:9IM402
|
4.1
|
60.4
|
1.0
|
C17
|
B:9IM402
|
4.2
|
60.1
|
1.0
|
SD
|
A:MET120
|
4.2
|
81.5
|
1.0
|
C18
|
B:9IM402
|
4.3
|
55.2
|
1.0
|
HE1
|
A:MET120
|
4.4
|
57.7
|
1.0
|
C13
|
B:9IM402
|
4.5
|
53.2
|
1.0
|
HB3
|
B:TYR46
|
4.5
|
58.2
|
1.0
|
OH
|
A:TYR106
|
4.5
|
60.5
|
1.0
|
HH
|
A:TYR106
|
4.7
|
51.6
|
1.0
|
C08
|
B:9IM402
|
4.7
|
44.9
|
1.0
|
F28
|
B:9IM402
|
4.8
|
60.9
|
1.0
|
F31
|
B:9IM402
|
4.8
|
66.3
|
1.0
|
CE
|
A:MET120
|
4.8
|
54.4
|
1.0
|
HE3
|
A:MET120
|
4.9
|
58.9
|
1.0
|
HD2
|
B:TYR46
|
4.9
|
58.7
|
1.0
|
HB2
|
B:HIS50
|
4.9
|
49.2
|
1.0
|
HB3
|
A:MET120
|
4.9
|
58.9
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 3 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F402
b:60.9
occ:1.00
|
F28
|
B:9IM402
|
0.0
|
60.9
|
1.0
|
C27
|
B:9IM402
|
1.4
|
60.9
|
1.0
|
C26
|
B:9IM402
|
2.4
|
48.5
|
1.0
|
C29
|
B:9IM402
|
2.4
|
60.4
|
1.0
|
HB3
|
A:LEU123
|
2.4
|
47.0
|
1.0
|
H261
|
B:9IM402
|
2.6
|
53.0
|
1.0
|
H291
|
B:9IM402
|
2.6
|
53.6
|
1.0
|
HD13
|
A:LEU123
|
2.7
|
48.9
|
1.0
|
HB2
|
B:HIS50
|
3.0
|
49.2
|
1.0
|
CB
|
A:LEU123
|
3.3
|
41.8
|
1.0
|
HA
|
B:LEU47
|
3.4
|
50.1
|
1.0
|
HD22
|
A:LEU123
|
3.5
|
47.9
|
1.0
|
CD1
|
A:LEU123
|
3.5
|
47.4
|
1.0
|
C24
|
B:9IM402
|
3.6
|
37.5
|
1.0
|
HB3
|
B:HIS50
|
3.6
|
49.1
|
1.0
|
C30
|
B:9IM402
|
3.6
|
57.9
|
1.0
|
HB2
|
A:LEU123
|
3.7
|
49.7
|
1.0
|
CB
|
B:HIS50
|
3.7
|
39.7
|
1.0
|
O
|
B:TYR46
|
3.8
|
60.3
|
1.0
|
CG
|
A:LEU123
|
3.8
|
43.4
|
1.0
|
HD12
|
A:LEU123
|
3.8
|
48.8
|
1.0
|
HB3
|
B:TYR46
|
3.9
|
58.2
|
1.0
|
CG
|
B:HIS50
|
3.9
|
46.0
|
1.0
|
ND1
|
B:HIS50
|
4.0
|
53.4
|
1.0
|
C
|
A:LEU123
|
4.1
|
45.9
|
1.0
|
C23
|
B:9IM402
|
4.1
|
39.3
|
1.0
|
CD2
|
A:LEU123
|
4.1
|
47.1
|
1.0
|
C
|
B:TYR46
|
4.1
|
50.6
|
1.0
|
H111
|
B:9IM402
|
4.2
|
52.3
|
1.0
|
O
|
A:LEU123
|
4.2
|
58.9
|
1.0
|
HD11
|
A:LEU123
|
4.2
|
49.0
|
1.0
|
CA
|
B:LEU47
|
4.2
|
44.0
|
1.0
|
HA
|
A:LEU124
|
4.2
|
47.8
|
1.0
|
HD13
|
B:LEU47
|
4.3
|
49.9
|
1.0
|
CA
|
A:LEU123
|
4.3
|
40.8
|
1.0
|
N
|
A:LEU124
|
4.3
|
44.8
|
1.0
|
N
|
B:LEU47
|
4.3
|
41.1
|
1.0
|
HD21
|
A:LEU123
|
4.6
|
48.8
|
1.0
|
H
|
A:LEU124
|
4.6
|
49.2
|
1.0
|
HB2
|
A:SER127
|
4.6
|
48.1
|
1.0
|
HD12
|
B:LEU47
|
4.7
|
49.8
|
1.0
|
CB
|
B:TYR46
|
4.7
|
51.2
|
1.0
|
HB2
|
B:TYR46
|
4.7
|
57.7
|
1.0
|
HA
|
A:LEU123
|
4.7
|
47.5
|
1.0
|
F25
|
B:9IM402
|
4.8
|
55.9
|
1.0
|
F31
|
B:9IM402
|
4.8
|
66.3
|
1.0
|
HG
|
A:LEU123
|
4.8
|
49.1
|
1.0
|
H
|
B:HIS50
|
4.8
|
49.8
|
1.0
|
CD2
|
B:HIS50
|
4.8
|
44.7
|
1.0
|
HB2
|
B:LEU47
|
4.8
|
49.4
|
1.0
|
CA
|
A:LEU124
|
4.8
|
42.3
|
1.0
|
CE1
|
B:HIS50
|
4.9
|
58.2
|
1.0
|
H
|
B:LEU47
|
4.9
|
51.0
|
1.0
|
HD23
|
A:LEU123
|
4.9
|
48.8
|
1.0
|
CD1
|
B:LEU47
|
4.9
|
47.0
|
1.0
|
HB2
|
A:LEU124
|
5.0
|
47.2
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 4 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F402
b:66.3
occ:1.00
|
F31
|
B:9IM402
|
0.0
|
66.3
|
1.0
|
C30
|
B:9IM402
|
1.4
|
57.9
|
1.0
|
C29
|
B:9IM402
|
2.4
|
60.4
|
1.0
|
C23
|
B:9IM402
|
2.4
|
39.3
|
1.0
|
H221
|
B:9IM402
|
2.4
|
52.4
|
1.0
|
HD13
|
A:LEU124
|
2.5
|
48.5
|
1.0
|
H291
|
B:9IM402
|
2.6
|
53.6
|
1.0
|
HB2
|
A:LEU124
|
2.7
|
47.2
|
1.0
|
HB2
|
A:SER53
|
2.7
|
43.0
|
1.0
|
C22
|
B:9IM402
|
2.9
|
49.4
|
1.0
|
HD21
|
A:LEU124
|
2.9
|
48.2
|
1.0
|
CD1
|
A:LEU124
|
3.4
|
55.6
|
1.0
|
H222
|
B:9IM402
|
3.5
|
53.9
|
1.0
|
CB
|
A:LEU124
|
3.5
|
42.0
|
1.0
|
C27
|
B:9IM402
|
3.6
|
60.9
|
1.0
|
C24
|
B:9IM402
|
3.6
|
37.5
|
1.0
|
CB
|
A:SER53
|
3.7
|
47.1
|
1.0
|
CD2
|
A:LEU124
|
3.7
|
52.7
|
1.0
|
CG
|
A:LEU124
|
3.7
|
52.6
|
1.0
|
HD11
|
A:LEU124
|
3.9
|
49.6
|
1.0
|
N21
|
B:9IM402
|
3.9
|
51.0
|
1.0
|
H211
|
B:9IM402
|
4.0
|
52.5
|
1.0
|
HB3
|
A:SER53
|
4.0
|
42.5
|
1.0
|
HD12
|
A:LEU124
|
4.0
|
49.7
|
1.0
|
O
|
A:MET120
|
4.1
|
61.6
|
1.0
|
HA
|
A:SER53
|
4.1
|
40.6
|
1.0
|
C26
|
B:9IM402
|
4.1
|
48.5
|
1.0
|
HB3
|
A:LEU124
|
4.1
|
48.5
|
1.0
|
HA
|
A:LEU124
|
4.2
|
47.8
|
1.0
|
HB3
|
A:MET120
|
4.2
|
58.9
|
1.0
|
HD23
|
A:LEU124
|
4.2
|
49.3
|
1.0
|
HD22
|
A:LEU124
|
4.4
|
49.0
|
1.0
|
HG
|
A:SER53
|
4.4
|
43.2
|
1.0
|
CA
|
A:LEU124
|
4.4
|
42.3
|
1.0
|
OG
|
A:SER53
|
4.5
|
51.2
|
1.0
|
H
|
A:LEU124
|
4.5
|
49.2
|
1.0
|
CA
|
A:SER53
|
4.5
|
34.1
|
1.0
|
HE2
|
A:TYR106
|
4.6
|
51.6
|
1.0
|
HG
|
A:LEU124
|
4.7
|
49.3
|
1.0
|
N
|
A:LEU124
|
4.7
|
44.8
|
1.0
|
OH
|
A:TYR106
|
4.7
|
60.5
|
1.0
|
NE2
|
B:HIS50
|
4.7
|
48.7
|
1.0
|
F25
|
B:9IM402
|
4.8
|
55.9
|
1.0
|
F28
|
B:9IM402
|
4.8
|
60.9
|
1.0
|
C
|
A:MET120
|
4.9
|
51.8
|
1.0
|
CE1
|
B:HIS50
|
5.0
|
58.2
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 5 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:67.2
occ:1.00
|
F10
|
C:9IM402
|
0.0
|
67.2
|
1.0
|
C09
|
C:9IM402
|
1.4
|
49.6
|
1.0
|
C11
|
C:9IM402
|
2.4
|
45.7
|
1.0
|
C08
|
C:9IM402
|
2.4
|
42.6
|
1.0
|
H072
|
C:9IM402
|
2.4
|
52.2
|
1.0
|
HD2
|
D:HIS50
|
2.5
|
50.7
|
1.0
|
H171
|
C:9IM402
|
2.5
|
52.7
|
1.0
|
H111
|
C:9IM402
|
2.5
|
51.0
|
1.0
|
HA
|
D:HIS50
|
2.7
|
51.5
|
1.0
|
C07
|
C:9IM402
|
2.8
|
46.4
|
1.0
|
H211
|
C:9IM402
|
3.2
|
51.6
|
1.0
|
CD2
|
D:HIS50
|
3.2
|
45.9
|
1.0
|
C17
|
C:9IM402
|
3.4
|
59.9
|
1.0
|
HB2
|
D:HIS50
|
3.4
|
52.1
|
1.0
|
CA
|
D:HIS50
|
3.5
|
46.1
|
1.0
|
H071
|
C:9IM402
|
3.5
|
51.6
|
1.0
|
C12
|
C:9IM402
|
3.6
|
53.0
|
1.0
|
C14
|
C:9IM402
|
3.6
|
50.7
|
1.0
|
CB
|
D:HIS50
|
3.7
|
45.1
|
1.0
|
N06
|
C:9IM402
|
3.7
|
48.5
|
1.0
|
CG
|
D:HIS50
|
3.8
|
47.8
|
1.0
|
F25
|
C:9IM402
|
3.8
|
55.9
|
1.0
|
C24
|
C:9IM402
|
3.9
|
36.4
|
1.0
|
C16
|
C:9IM402
|
3.9
|
59.6
|
1.0
|
N21
|
C:9IM402
|
3.9
|
50.6
|
1.0
|
OG
|
D:SER53
|
3.9
|
53.8
|
1.0
|
HG
|
D:SER53
|
4.0
|
52.6
|
1.0
|
HB3
|
D:SER53
|
4.0
|
50.9
|
1.0
|
C26
|
C:9IM402
|
4.1
|
46.8
|
1.0
|
C13
|
C:9IM402
|
4.1
|
53.1
|
1.0
|
N
|
D:HIS50
|
4.2
|
53.0
|
1.0
|
H261
|
C:9IM402
|
4.2
|
51.9
|
1.0
|
C23
|
C:9IM402
|
4.4
|
37.7
|
1.0
|
H121
|
C:9IM402
|
4.4
|
52.8
|
1.0
|
NE2
|
D:HIS50
|
4.4
|
51.6
|
1.0
|
CB
|
D:SER53
|
4.5
|
50.3
|
1.0
|
C18
|
C:9IM402
|
4.5
|
53.5
|
1.0
|
H
|
D:HIS50
|
4.5
|
52.6
|
1.0
|
O
|
D:LEU49
|
4.6
|
53.7
|
1.0
|
HD2
|
C:HIS50
|
4.7
|
42.1
|
1.0
|
C
|
D:LEU49
|
4.7
|
53.8
|
1.0
|
C
|
D:HIS50
|
4.7
|
52.1
|
1.0
|
HB3
|
D:HIS50
|
4.7
|
52.0
|
1.0
|
C19
|
C:9IM402
|
4.7
|
52.5
|
1.0
|
HB2
|
D:SER53
|
4.7
|
51.6
|
1.0
|
O
|
D:HIS50
|
4.8
|
63.3
|
1.0
|
C27
|
C:9IM402
|
4.8
|
58.8
|
1.0
|
C22
|
C:9IM402
|
4.8
|
47.5
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 6 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:55.9
occ:1.00
|
F25
|
C:9IM402
|
0.0
|
55.9
|
1.0
|
C24
|
C:9IM402
|
1.4
|
36.4
|
1.0
|
C23
|
C:9IM402
|
2.4
|
37.7
|
1.0
|
C26
|
C:9IM402
|
2.4
|
46.8
|
1.0
|
H261
|
C:9IM402
|
2.6
|
51.9
|
1.0
|
H111
|
C:9IM402
|
2.6
|
51.0
|
1.0
|
N21
|
C:9IM402
|
2.7
|
50.6
|
1.0
|
C22
|
C:9IM402
|
2.8
|
47.5
|
1.0
|
H222
|
C:9IM402
|
2.8
|
52.4
|
1.0
|
H211
|
C:9IM402
|
2.9
|
51.6
|
1.0
|
C11
|
C:9IM402
|
3.0
|
45.7
|
1.0
|
C19
|
C:9IM402
|
3.4
|
52.5
|
1.0
|
H171
|
C:9IM402
|
3.4
|
52.7
|
1.0
|
C12
|
C:9IM402
|
3.6
|
53.0
|
1.0
|
C09
|
C:9IM402
|
3.6
|
49.6
|
1.0
|
C27
|
C:9IM402
|
3.6
|
58.8
|
1.0
|
C30
|
C:9IM402
|
3.6
|
56.8
|
1.0
|
H121
|
C:9IM402
|
3.7
|
52.8
|
1.0
|
H221
|
C:9IM402
|
3.7
|
51.8
|
1.0
|
HG2
|
C:MET120
|
3.8
|
53.7
|
1.0
|
O20
|
C:9IM402
|
3.8
|
44.1
|
1.0
|
F10
|
C:9IM402
|
3.8
|
67.2
|
1.0
|
HE2
|
C:MET120
|
3.8
|
51.5
|
1.0
|
HH
|
C:TYR106
|
4.0
|
49.6
|
1.0
|
C17
|
C:9IM402
|
4.0
|
59.9
|
1.0
|
C29
|
C:9IM402
|
4.1
|
58.9
|
1.0
|
C18
|
C:9IM402
|
4.2
|
53.5
|
1.0
|
OH
|
C:TYR106
|
4.5
|
59.9
|
1.0
|
C13
|
C:9IM402
|
4.6
|
53.1
|
1.0
|
C08
|
C:9IM402
|
4.6
|
42.6
|
1.0
|
CG
|
C:MET120
|
4.7
|
62.4
|
1.0
|
CE
|
C:MET120
|
4.7
|
46.2
|
1.0
|
HD1
|
D:TYR46
|
4.7
|
57.4
|
1.0
|
F28
|
C:9IM402
|
4.8
|
61.4
|
1.0
|
F31
|
C:9IM402
|
4.8
|
64.4
|
1.0
|
HB3
|
D:TYR46
|
4.8
|
57.5
|
1.0
|
HB2
|
D:HIS50
|
4.9
|
52.1
|
1.0
|
HE3
|
C:MET120
|
5.0
|
50.9
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 7 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:61.4
occ:1.00
|
F28
|
C:9IM402
|
0.0
|
61.4
|
1.0
|
C27
|
C:9IM402
|
1.4
|
58.8
|
1.0
|
C26
|
C:9IM402
|
2.4
|
46.8
|
1.0
|
C29
|
C:9IM402
|
2.4
|
58.9
|
1.0
|
HB3
|
C:LEU123
|
2.4
|
43.8
|
1.0
|
H261
|
C:9IM402
|
2.6
|
51.9
|
1.0
|
H291
|
C:9IM402
|
2.6
|
52.7
|
1.0
|
HD13
|
C:LEU123
|
3.0
|
44.8
|
1.0
|
HB2
|
D:HIS50
|
3.0
|
52.1
|
1.0
|
CB
|
C:LEU123
|
3.3
|
37.6
|
1.0
|
HD22
|
C:LEU123
|
3.4
|
44.8
|
1.0
|
HA
|
D:LEU47
|
3.4
|
52.0
|
1.0
|
HB3
|
D:TYR46
|
3.6
|
57.5
|
1.0
|
HB2
|
C:LEU123
|
3.6
|
46.0
|
1.0
|
C24
|
C:9IM402
|
3.6
|
36.4
|
1.0
|
HB3
|
D:HIS50
|
3.6
|
52.0
|
1.0
|
C30
|
C:9IM402
|
3.6
|
56.8
|
1.0
|
CB
|
D:HIS50
|
3.7
|
45.1
|
1.0
|
O
|
D:TYR46
|
3.8
|
59.4
|
1.0
|
CD1
|
C:LEU123
|
3.8
|
43.8
|
1.0
|
CG
|
C:LEU123
|
3.9
|
39.3
|
1.0
|
CG
|
D:HIS50
|
4.0
|
47.8
|
1.0
|
ND1
|
D:HIS50
|
4.0
|
55.7
|
1.0
|
C
|
C:LEU123
|
4.1
|
44.5
|
1.0
|
C
|
D:TYR46
|
4.1
|
50.0
|
1.0
|
CD2
|
C:LEU123
|
4.1
|
44.3
|
1.0
|
C23
|
C:9IM402
|
4.1
|
37.7
|
1.0
|
HD12
|
C:LEU123
|
4.1
|
45.4
|
1.0
|
H111
|
C:9IM402
|
4.2
|
51.0
|
1.0
|
O
|
C:LEU123
|
4.2
|
58.6
|
1.0
|
CA
|
D:LEU47
|
4.3
|
48.7
|
1.0
|
HA
|
C:LEU124
|
4.3
|
45.4
|
1.0
|
HD13
|
D:LEU47
|
4.3
|
51.9
|
1.0
|
CA
|
C:LEU123
|
4.3
|
37.3
|
1.0
|
N
|
D:LEU47
|
4.3
|
42.0
|
1.0
|
N
|
C:LEU124
|
4.4
|
39.8
|
1.0
|
CB
|
D:TYR46
|
4.4
|
55.1
|
1.0
|
HD11
|
C:LEU123
|
4.5
|
45.7
|
1.0
|
HB2
|
D:TYR46
|
4.6
|
57.4
|
1.0
|
H
|
C:LEU124
|
4.6
|
46.0
|
1.0
|
HD21
|
C:LEU123
|
4.6
|
45.7
|
1.0
|
HD12
|
D:LEU47
|
4.7
|
51.6
|
1.0
|
HB2
|
C:SER127
|
4.7
|
46.9
|
1.0
|
HA
|
C:LEU123
|
4.7
|
44.2
|
1.0
|
H
|
D:HIS50
|
4.7
|
52.6
|
1.0
|
F25
|
C:9IM402
|
4.8
|
55.9
|
1.0
|
F31
|
C:9IM402
|
4.8
|
64.4
|
1.0
|
HD23
|
C:LEU123
|
4.8
|
45.3
|
1.0
|
CD2
|
D:HIS50
|
4.8
|
45.9
|
1.0
|
H
|
D:LEU47
|
4.8
|
52.2
|
1.0
|
CA
|
C:LEU124
|
4.9
|
39.3
|
1.0
|
HG
|
C:LEU123
|
4.9
|
45.1
|
1.0
|
HB2
|
D:LEU47
|
4.9
|
51.2
|
1.0
|
CE1
|
D:HIS50
|
4.9
|
60.6
|
1.0
|
CA
|
D:TYR46
|
4.9
|
47.8
|
1.0
|
CD1
|
D:LEU47
|
5.0
|
47.7
|
1.0
|
HB2
|
C:LEU124
|
5.0
|
44.3
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 8flm
Go back to
Fluorine Binding Sites List in 8flm
Fluorine binding site 8 out
of 8 in the Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Cryo-Em Structure of Sting Oligomer Bound to Cgamp, Nvs-STG2 and C53 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:64.4
occ:1.00
|
F31
|
C:9IM402
|
0.0
|
64.4
|
1.0
|
C30
|
C:9IM402
|
1.4
|
56.8
|
1.0
|
C29
|
C:9IM402
|
2.4
|
58.9
|
1.0
|
C23
|
C:9IM402
|
2.4
|
37.7
|
1.0
|
H221
|
C:9IM402
|
2.4
|
51.8
|
1.0
|
HB2
|
C:LEU124
|
2.5
|
44.3
|
1.0
|
HD13
|
C:LEU124
|
2.5
|
45.8
|
1.0
|
H291
|
C:9IM402
|
2.6
|
52.7
|
1.0
|
HB2
|
C:SER53
|
2.8
|
41.5
|
1.0
|
C22
|
C:9IM402
|
2.9
|
47.5
|
1.0
|
HD21
|
C:LEU124
|
2.9
|
45.7
|
1.0
|
CD1
|
C:LEU124
|
3.4
|
51.8
|
1.0
|
CB
|
C:LEU124
|
3.4
|
37.9
|
1.0
|
H222
|
C:9IM402
|
3.4
|
52.4
|
1.0
|
CG
|
C:LEU124
|
3.6
|
49.9
|
1.0
|
CD2
|
C:LEU124
|
3.6
|
50.4
|
1.0
|
C27
|
C:9IM402
|
3.6
|
58.8
|
1.0
|
C24
|
C:9IM402
|
3.6
|
36.4
|
1.0
|
CB
|
C:SER53
|
3.8
|
43.9
|
1.0
|
HD11
|
C:LEU124
|
3.9
|
46.8
|
1.0
|
O
|
C:MET120
|
3.9
|
58.9
|
1.0
|
N21
|
C:9IM402
|
3.9
|
50.6
|
1.0
|
HB3
|
C:MET120
|
4.0
|
51.2
|
1.0
|
HD12
|
C:LEU124
|
4.0
|
46.8
|
1.0
|
HB3
|
C:LEU124
|
4.0
|
45.4
|
1.0
|
H211
|
C:9IM402
|
4.0
|
51.6
|
1.0
|
HB3
|
C:SER53
|
4.0
|
41.3
|
1.0
|
HA
|
C:LEU124
|
4.1
|
45.4
|
1.0
|
HA
|
C:SER53
|
4.1
|
38.6
|
1.0
|
C26
|
C:9IM402
|
4.1
|
46.8
|
1.0
|
HD23
|
C:LEU124
|
4.2
|
46.5
|
1.0
|
CA
|
C:LEU124
|
4.3
|
39.3
|
1.0
|
HD22
|
C:LEU124
|
4.3
|
46.3
|
1.0
|
H
|
C:LEU124
|
4.3
|
46.0
|
1.0
|
HG
|
C:SER53
|
4.5
|
41.1
|
1.0
|
CA
|
C:SER53
|
4.5
|
31.5
|
1.0
|
OG
|
C:SER53
|
4.6
|
47.4
|
1.0
|
N
|
C:LEU124
|
4.6
|
39.8
|
1.0
|
HG
|
C:LEU124
|
4.6
|
46.4
|
1.0
|
HG2
|
C:MET120
|
4.7
|
53.7
|
1.0
|
C
|
C:MET120
|
4.7
|
47.4
|
1.0
|
F25
|
C:9IM402
|
4.8
|
55.9
|
1.0
|
NE2
|
D:HIS50
|
4.8
|
51.6
|
1.0
|
F28
|
C:9IM402
|
4.8
|
61.4
|
1.0
|
HE2
|
C:TYR106
|
4.9
|
49.2
|
1.0
|
CB
|
C:MET120
|
4.9
|
51.1
|
1.0
|
OH
|
C:TYR106
|
4.9
|
59.9
|
1.0
|
CE1
|
D:HIS50
|
4.9
|
60.6
|
1.0
|
|
Reference:
J.Li,
S.M.Canham,
H.Wu,
M.Henault,
L.Chen,
G.Liu,
Y.Chen,
G.Yu,
H.R.Miller,
V.Hornak,
S.M.Brittain,
G.A.Michaud,
A.Tutter,
W.Broom,
M.E.Digan,
S.M.Mcwhirter,
K.E.Sivick,
H.T.Pham,
C.H.Chen,
G.S.Tria,
J.M.Mckenna,
M.Schirle,
X.Mao,
T.B.Nicholson,
Y.Wang,
J.L.Jenkins,
R.K.Jain,
J.A.Tallarico,
S.J.Patel,
L.Zheng,
N.T.Ross,
C.Y.Cho,
X.Zhang,
X.C.Bai,
Y.Feng.
Activation of Human Sting By A Molecular Glue-Like Compound. Nat.Chem.Biol. 2023.
ISSN: ESSN 1552-4469
PubMed: 37828400
DOI: 10.1038/S41589-023-01434-Y
Page generated: Fri Aug 2 19:11:23 2024
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