Fluorine in PDB 8fug: Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Fluorine atom in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 (pdb code 8fug). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 23 binding sites of Fluorine where determined in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1, PDB code: 8fug:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:F401 b:0.0 occ:1.00 F1 A:Y9H401 0.0 0.0 1.0 C17 A:Y9H401 1.4 0.0 1.0 H19 A:Y9H401 2.0 0.0 1.0 H18 A:Y9H401 2.0 0.0 1.0 C1 A:Y9H401 2.4 0.0 1.0 HB2 A:GLN351 2.4 55.7 1.0 H17 A:Y9H401 2.5 0.0 1.0 HG3 C:GLN351 2.7 55.5 1.0 H2 A:Y9H401 2.7 0.0 1.0 O C:GLN351 2.8 52.9 1.0 C2 A:Y9H401 2.9 0.0 1.0 O A:SER352 3.0 45.3 1.0 H A:SER352 3.0 47.8 1.0 H16 A:Y9H401 3.2 0.0 1.0 N A:SER352 3.3 47.9 1.0 CB A:GLN351 3.3 53.6 1.0 H1 A:Y9H401 3.3 0.0 1.0 HA C:SER352 3.5 46.8 1.0 HA A:GLN351 3.6 55.8 1.0 C A:GLN351 3.6 52.4 1.0 C5 A:Y9H401 3.6 0.0 1.0 CG C:GLN351 3.6 54.5 1.0 C C:GLN351 3.7 52.4 1.0 C A:SER352 3.7 46.1 1.0 CA A:GLN351 3.7 54.5 1.0 HG3 A:GLN351 3.8 55.5 1.0 HG2 C:GLN351 3.9 55.6 1.0 HB3 A:GLN351 4.0 55.4 1.0 CA A:SER352 4.1 45.3 1.0 CG A:GLN351 4.1 54.5 1.0 H15 A:Y9H401 4.2 0.0 1.0 CA C:SER352 4.2 45.3 1.0 OE1 C:GLN351 4.2 62.7 1.0 H17 C:Y9H401 4.2 0.0 1.0 N C:SER352 4.2 47.9 1.0 C3 A:Y9H401 4.3 0.0 1.0 O A:GLN351 4.3 52.9 1.0 HB2 C:LYS353 4.4 35.9 1.0 H14 A:Y9H401 4.4 0.0 1.0 CD C:GLN351 4.4 59.0 1.0 HB2 A:LYS353 4.4 35.9 1.0 HB2 C:GLN351 4.5 55.7 1.0 H C:LYS353 4.5 38.8 1.0 HA A:SER352 4.5 46.8 1.0 CB C:GLN351 4.5 53.6 1.0 C C:SER352 4.5 46.1 1.0 N C:LYS353 4.6 39.5 1.0 CA C:GLN351 4.7 54.5 1.0 N A:LYS353 4.7 39.5 1.0 CD A:GLN351 4.7 59.0 1.0 F1 C:Y9H401 4.8 0.0 1.0 H5 A:Y9H401 4.8 0.0 1.0 H15 C:Y9H401 4.8 0.0 1.0 H13 A:Y9H401 4.8 0.0 1.0 C6 A:Y9H401 4.8 0.0 1.0 HG2 A:GLN351 5.0 55.6 1.0 OE1 A:GLN351 5.0 62.7 1.0 H C:SER352 5.0 47.8 1.0 HA A:LYS353 5.0 36.8 1.0

Fluorine binding site 2 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ B:F401 b:0.0 occ:1.00 F1 B:Y9H401 0.0 0.0 1.0 C17 B:Y9H401 1.4 0.0 1.0 H19 B:Y9H401 2.0 0.0 1.0 H18 B:Y9H401 2.0 0.0 1.0 C1 B:Y9H401 2.4 0.0 1.0 HB2 B:GLN351 2.4 55.7 1.0 H17 B:Y9H401 2.5 0.0 1.0 HG3 D:GLN351 2.6 55.5 1.0 H2 B:Y9H401 2.7 0.0 1.0 O D:GLN351 2.8 52.9 1.0 C2 B:Y9H401 2.9 0.0 1.0 O B:SER352 3.0 45.3 1.0 H B:SER352 3.0 47.8 1.0 H16 B:Y9H401 3.2 0.0 1.0 N B:SER352 3.3 47.9 1.0 CB B:GLN351 3.3 53.6 1.0 H1 B:Y9H401 3.3 0.0 1.0 HA D:SER352 3.5 46.8 1.0 HA B:GLN351 3.6 55.8 1.0 C B:GLN351 3.6 52.4 1.0 CG D:GLN351 3.6 54.5 1.0 C5 B:Y9H401 3.6 0.0 1.0 C D:GLN351 3.6 52.4 1.0 C B:SER352 3.7 46.1 1.0 CA B:GLN351 3.7 54.5 1.0 HG3 B:GLN351 3.8 55.5 1.0 HG2 D:GLN351 3.8 55.6 1.0 HB3 B:GLN351 4.0 55.4 1.0 CA B:SER352 4.1 45.3 1.0 CG B:GLN351 4.1 54.5 1.0 OE1 D:GLN351 4.2 62.7 1.0 H15 B:Y9H401 4.2 0.0 1.0 CA D:SER352 4.2 45.3 1.0 H17 D:Y9H401 4.2 0.0 1.0 N D:SER352 4.2 47.9 1.0 C3 B:Y9H401 4.3 0.0 1.0 O B:GLN351 4.3 52.9 1.0 CD D:GLN351 4.4 59.0 1.0 H14 B:Y9H401 4.4 0.0 1.0 HB2 B:LYS353 4.4 35.9 1.0 HB2 D:GLN351 4.4 55.7 1.0 HB2 D:LYS353 4.4 35.9 1.0 CB D:GLN351 4.5 53.6 1.0 HA B:SER352 4.5 46.8 1.0 H D:LYS353 4.5 38.8 1.0 C D:SER352 4.5 46.1 1.0 CA D:GLN351 4.7 54.5 1.0 N D:LYS353 4.7 39.5 1.0 N B:LYS353 4.7 39.5 1.0 CD B:GLN351 4.7 59.0 1.0 F1 D:Y9H401 4.8 0.0 1.0 H5 B:Y9H401 4.8 0.0 1.0 H13 B:Y9H401 4.8 0.0 1.0 C6 B:Y9H401 4.8 0.0 1.0 H15 D:Y9H401 4.9 0.0 1.0 HG2 B:GLN351 5.0 55.6 1.0 OE1 B:GLN351 5.0 62.7 1.0 H D:SER352 5.0 47.8 1.0 HA B:LYS353 5.0 36.8 1.0 H D:GLN351 5.0 55.7 1.0

Fluorine binding site 3 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ C:F401 b:0.0 occ:1.00 F1 C:Y9H401 0.0 0.0 1.0 C17 C:Y9H401 1.4 0.0 1.0 H19 C:Y9H401 2.0 0.0 1.0 H18 C:Y9H401 2.0 0.0 1.0 C1 C:Y9H401 2.4 0.0 1.0 HB2 C:GLN351 2.4 55.7 1.0 H17 C:Y9H401 2.5 0.0 1.0 HG3 E:GLN351 2.7 55.5 1.0 H2 C:Y9H401 2.7 0.0 1.0 H18 A:Y9H401 2.8 0.0 1.0 O E:GLN351 2.8 52.9 1.0 C2 C:Y9H401 2.9 0.0 1.0 O C:SER352 3.0 45.3 1.0 H C:SER352 3.0 47.8 1.0 H16 C:Y9H401 3.2 0.0 1.0 N C:SER352 3.3 47.9 1.0 CB C:GLN351 3.3 53.6 1.0 H1 C:Y9H401 3.3 0.0 1.0 HA E:SER352 3.5 46.8 1.0 HA C:GLN351 3.6 55.8 1.0 C C:GLN351 3.6 52.4 1.0 C5 C:Y9H401 3.6 0.0 1.0 CG E:GLN351 3.6 54.5 1.0 C E:GLN351 3.7 52.4 1.0 C C:SER352 3.7 46.1 1.0 CA C:GLN351 3.7 54.5 1.0 C17 A:Y9H401 3.8 0.0 1.0 HG3 C:GLN351 3.8 55.5 1.0 HG2 E:GLN351 3.9 55.6 1.0 HB3 C:GLN351 4.0 55.4 1.0 CA C:SER352 4.1 45.3 1.0 H19 A:Y9H401 4.1 0.0 1.0 H1 A:Y9H401 4.1 0.0 1.0 CG C:GLN351 4.1 54.5 1.0 H15 C:Y9H401 4.2 0.0 1.0 CA E:SER352 4.2 45.3 1.0 OE1 E:GLN351 4.2 62.7 1.0 H17 E:Y9H401 4.2 0.0 1.0 N E:SER352 4.2 47.9 1.0 C3 C:Y9H401 4.3 0.0 1.0 O C:GLN351 4.3 52.9 1.0 HB2 E:LYS353 4.4 35.9 1.0 H14 C:Y9H401 4.4 0.0 1.0 C1 A:Y9H401 4.4 0.0 1.0 CD E:GLN351 4.4 59.0 1.0 H2 A:Y9H401 4.4 0.0 1.0 HB2 C:LYS353 4.4 35.9 1.0 HB2 E:GLN351 4.5 55.7 1.0 H E:LYS353 4.5 38.8 1.0 HA C:SER352 4.5 46.8 1.0 CB E:GLN351 4.5 53.6 1.0 C E:SER352 4.5 46.1 1.0 N E:LYS353 4.6 39.5 1.0 CA E:GLN351 4.7 54.5 1.0 N C:LYS353 4.7 39.5 1.0 CD C:GLN351 4.7 59.0 1.0 F1 E:Y9H401 4.8 0.0 1.0 F1 A:Y9H401 4.8 0.0 1.0 H5 C:Y9H401 4.8 0.0 1.0 H15 E:Y9H401 4.8 0.0 1.0 H13 C:Y9H401 4.8 0.0 1.0 C6 C:Y9H401 4.8 0.0 1.0 HG2 C:GLN351 5.0 55.6 1.0 OE1 C:GLN351 5.0 62.7 1.0 H E:SER352 5.0 47.8 1.0 HA C:LYS353 5.0 36.8 1.0

Fluorine binding site 4 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ D:F401 b:0.0 occ:1.00 F1 D:Y9H401 0.0 0.0 1.0 C17 D:Y9H401 1.4 0.0 1.0 H19 D:Y9H401 2.0 0.0 1.0 H18 D:Y9H401 2.0 0.0 1.0 C1 D:Y9H401 2.4 0.0 1.0 HB2 D:GLN351 2.4 55.7 1.0 H17 D:Y9H401 2.5 0.0 1.0 HG3 F:GLN351 2.6 55.5 1.0 H2 D:Y9H401 2.7 0.0 1.0 O F:GLN351 2.8 52.9 1.0 H18 B:Y9H401 2.8 0.0 1.0 C2 D:Y9H401 2.9 0.0 1.0 O D:SER352 3.0 45.3 1.0 H D:SER352 3.0 47.8 1.0 H16 D:Y9H401 3.2 0.0 1.0 N D:SER352 3.3 47.9 1.0 CB D:GLN351 3.3 53.6 1.0 H1 D:Y9H401 3.3 0.0 1.0 HA F:SER352 3.5 46.8 1.0 HA D:GLN351 3.6 55.8 1.0 C D:GLN351 3.6 52.4 1.0 CG F:GLN351 3.6 54.5 1.0 C5 D:Y9H401 3.6 0.0 1.0 C F:GLN351 3.7 52.4 1.0 C D:SER352 3.7 46.1 1.0 CA D:GLN351 3.7 54.5 1.0 C17 B:Y9H401 3.8 0.0 1.0 HG3 D:GLN351 3.8 55.5 1.0 HG2 F:GLN351 3.8 55.6 1.0 HB3 D:GLN351 4.0 55.4 1.0 H19 B:Y9H401 4.1 0.0 1.0 CA D:SER352 4.1 45.3 1.0 H1 B:Y9H401 4.1 0.0 1.0 CG D:GLN351 4.1 54.5 1.0 OE1 F:GLN351 4.2 62.7 1.0 H15 D:Y9H401 4.2 0.0 1.0 CA F:SER352 4.2 45.3 1.0 H17 F:Y9H401 4.2 0.0 1.0 N F:SER352 4.2 47.9 1.0 C3 D:Y9H401 4.3 0.0 1.0 O D:GLN351 4.3 52.9 1.0 CD F:GLN351 4.4 59.0 1.0 H14 D:Y9H401 4.4 0.0 1.0 C1 B:Y9H401 4.4 0.0 1.0 H2 B:Y9H401 4.4 0.0 1.0 HB2 D:LYS353 4.4 35.9 1.0 HB2 F:GLN351 4.4 55.7 1.0 HB2 F:LYS353 4.4 35.9 1.0 CB F:GLN351 4.5 53.6 1.0 HA D:SER352 4.5 46.8 1.0 H F:LYS353 4.5 38.8 1.0 C F:SER352 4.5 46.1 1.0 CA F:GLN351 4.7 54.5 1.0 N F:LYS353 4.7 39.5 1.0 N D:LYS353 4.7 39.5 1.0 CD D:GLN351 4.7 59.0 1.0 F1 B:Y9H401 4.8 0.0 1.0 F1 F:Y9H401 4.8 0.0 1.0 H5 D:Y9H401 4.8 0.0 1.0 H13 D:Y9H401 4.8 0.0 1.0 C6 D:Y9H401 4.8 0.0 1.0 H15 F:Y9H401 4.9 0.0 1.0 HG2 D:GLN351 5.0 55.6 1.0 OE1 D:GLN351 5.0 62.7 1.0 H F:SER352 5.0 47.8 1.0 HA D:LYS353 5.0 36.8 1.0 H F:GLN351 5.0 55.7 1.0

Fluorine binding site 5 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ E:F401 b:0.0 occ:1.00 F1 E:Y9H401 0.0 0.0 1.0 C17 E:Y9H401 1.4 0.0 1.0 H19 E:Y9H401 2.0 0.0 1.0 H18 E:Y9H401 2.0 0.0 1.0 C1 E:Y9H401 2.4 0.0 1.0 HB2 E:GLN351 2.4 55.7 1.0 H17 E:Y9H401 2.5 0.0 1.0 HG3 G:GLN351 2.7 55.5 1.0 H2 E:Y9H401 2.7 0.0 1.0 H18 C:Y9H401 2.8 0.0 1.0 O G:GLN351 2.8 52.9 1.0 C2 E:Y9H401 2.9 0.0 1.0 O E:SER352 3.0 45.3 1.0 H E:SER352 3.0 47.8 1.0 H16 E:Y9H401 3.2 0.0 1.0 N E:SER352 3.3 47.9 1.0 CB E:GLN351 3.3 53.6 1.0 H1 E:Y9H401 3.3 0.0 1.0 HA G:SER352 3.5 46.8 1.0 HA E:GLN351 3.6 55.8 1.0 C E:GLN351 3.6 52.4 1.0 C5 E:Y9H401 3.6 0.0 1.0 CG G:GLN351 3.6 54.5 1.0 C G:GLN351 3.7 52.4 1.0 C E:SER352 3.7 46.1 1.0 CA E:GLN351 3.7 54.5 1.0 C17 C:Y9H401 3.8 0.0 1.0 HG3 E:GLN351 3.8 55.5 1.0 HG2 G:GLN351 3.9 55.6 1.0 HB3 E:GLN351 4.0 55.4 1.0 CA E:SER352 4.1 45.3 1.0 H19 C:Y9H401 4.1 0.0 1.0 H1 C:Y9H401 4.1 0.0 1.0 CG E:GLN351 4.1 54.5 1.0 H15 E:Y9H401 4.2 0.0 1.0 CA G:SER352 4.2 45.3 1.0 OE1 G:GLN351 4.2 62.7 1.0 H17 G:Y9H401 4.2 0.0 1.0 N G:SER352 4.2 47.9 1.0 C3 E:Y9H401 4.3 0.0 1.0 O E:GLN351 4.3 52.9 1.0 HB2 G:LYS353 4.4 35.9 1.0 H14 E:Y9H401 4.4 0.0 1.0 C1 C:Y9H401 4.4 0.0 1.0 CD G:GLN351 4.4 59.0 1.0 H2 C:Y9H401 4.4 0.0 1.0 HB2 E:LYS353 4.4 35.9 1.0 HB2 G:GLN351 4.5 55.7 1.0 H G:LYS353 4.5 38.8 1.0 HA E:SER352 4.5 46.8 1.0 CB G:GLN351 4.5 53.6 1.0 C G:SER352 4.5 46.1 1.0 N G:LYS353 4.6 39.5 1.0 CA G:GLN351 4.7 54.5 1.0 N E:LYS353 4.7 39.5 1.0 CD E:GLN351 4.7 59.0 1.0 F1 C:Y9H401 4.8 0.0 1.0 F1 G:Y9H401 4.8 0.0 1.0 H5 E:Y9H401 4.8 0.0 1.0 H15 G:Y9H401 4.8 0.0 1.0 H13 E:Y9H401 4.8 0.0 1.0 C6 E:Y9H401 4.8 0.0 1.0 HG2 E:GLN351 5.0 55.6 1.0 OE1 E:GLN351 5.0 62.7 1.0 H G:SER352 5.0 47.8 1.0 HA E:LYS353 5.0 36.8 1.0

Fluorine binding site 6 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ F:F401 b:0.0 occ:1.00 F1 F:Y9H401 0.0 0.0 1.0 C17 F:Y9H401 1.4 0.0 1.0 H19 F:Y9H401 2.0 0.0 1.0 H18 F:Y9H401 2.0 0.0 1.0 C1 F:Y9H401 2.4 0.0 1.0 HB2 F:GLN351 2.4 55.7 1.0 H17 F:Y9H401 2.5 0.0 1.0 HG3 H:GLN351 2.6 55.5 1.0 H2 F:Y9H401 2.7 0.0 1.0 O H:GLN351 2.8 52.9 1.0 H18 D:Y9H401 2.8 0.0 1.0 C2 F:Y9H401 2.9 0.0 1.0 O F:SER352 3.0 45.3 1.0 H F:SER352 3.0 47.8 1.0 H16 F:Y9H401 3.2 0.0 1.0 N F:SER352 3.3 47.9 1.0 CB F:GLN351 3.3 53.6 1.0 H1 F:Y9H401 3.3 0.0 1.0 HA H:SER352 3.5 46.8 1.0 HA F:GLN351 3.6 55.8 1.0 C F:GLN351 3.6 52.4 1.0 CG H:GLN351 3.6 54.5 1.0 C5 F:Y9H401 3.6 0.0 1.0 C H:GLN351 3.6 52.4 1.0 C F:SER352 3.7 46.1 1.0 CA F:GLN351 3.7 54.5 1.0 C17 D:Y9H401 3.8 0.0 1.0 HG3 F:GLN351 3.8 55.5 1.0 HG2 H:GLN351 3.8 55.6 1.0 HB3 F:GLN351 4.0 55.4 1.0 H19 D:Y9H401 4.1 0.0 1.0 CA F:SER352 4.1 45.3 1.0 H1 D:Y9H401 4.1 0.0 1.0 CG F:GLN351 4.1 54.5 1.0 OE1 H:GLN351 4.2 62.7 1.0 H15 F:Y9H401 4.2 0.0 1.0 CA H:SER352 4.2 45.3 1.0 H17 H:Y9H401 4.2 0.0 1.0 N H:SER352 4.2 47.9 1.0 C3 F:Y9H401 4.3 0.0 1.0 O F:GLN351 4.3 52.9 1.0 CD H:GLN351 4.4 59.0 1.0 H14 F:Y9H401 4.4 0.0 1.0 C1 D:Y9H401 4.4 0.0 1.0 H2 D:Y9H401 4.4 0.0 1.0 HB2 F:LYS353 4.4 35.9 1.0 HB2 H:GLN351 4.4 55.7 1.0 HB2 H:LYS353 4.4 35.9 1.0 CB H:GLN351 4.5 53.6 1.0 HA F:SER352 4.5 46.8 1.0 H H:LYS353 4.5 38.8 1.0 C H:SER352 4.5 46.1 1.0 CA H:GLN351 4.7 54.5 1.0 N H:LYS353 4.7 39.5 1.0 N F:LYS353 4.7 39.5 1.0 CD F:GLN351 4.7 59.0 1.0 F1 H:Y9H401 4.8 0.0 1.0 F1 D:Y9H401 4.8 0.0 1.0 H5 F:Y9H401 4.8 0.0 1.0 H13 F:Y9H401 4.8 0.0 1.0 C6 F:Y9H401 4.8 0.0 1.0 H15 H:Y9H401 4.9 0.0 1.0 HG2 F:GLN351 5.0 55.6 1.0 OE1 F:GLN351 5.0 62.7 1.0 H H:SER352 5.0 47.8 1.0 HA F:LYS353 5.0 36.8 1.0 H H:GLN351 5.0 55.7 1.0

Fluorine binding site 7 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ G:F401 b:0.0 occ:1.00 F1 G:Y9H401 0.0 0.0 1.0 C17 G:Y9H401 1.4 0.0 1.0 H18 G:Y9H401 2.0 0.0 1.0 H19 G:Y9H401 2.0 0.0 1.0 C1 G:Y9H401 2.4 0.0 1.0 HB2 G:GLN351 2.4 55.7 1.0 H17 G:Y9H401 2.5 0.0 1.0 HG3 I:GLN351 2.7 55.5 1.0 H2 G:Y9H401 2.7 0.0 1.0 H18 E:Y9H401 2.8 0.0 1.0 O I:GLN351 2.8 52.9 1.0 C2 G:Y9H401 2.9 0.0 1.0 O G:SER352 3.0 45.3 1.0 H G:SER352 3.0 47.8 1.0 H16 G:Y9H401 3.2 0.0 1.0 N G:SER352 3.3 47.9 1.0 CB G:GLN351 3.3 53.6 1.0 H1 G:Y9H401 3.3 0.0 1.0 HA I:SER352 3.5 46.8 1.0 HA G:GLN351 3.6 55.8 1.0 C G:GLN351 3.6 52.4 1.0 C5 G:Y9H401 3.6 0.0 1.0 CG I:GLN351 3.6 54.5 1.0 C I:GLN351 3.7 52.4 1.0 C G:SER352 3.7 46.1 1.0 CA G:GLN351 3.7 54.5 1.0 C17 E:Y9H401 3.8 0.0 1.0 HG3 G:GLN351 3.8 55.5 1.0 HG2 I:GLN351 3.9 55.6 1.0 HB3 G:GLN351 4.0 55.4 1.0 CA G:SER352 4.1 45.3 1.0 H19 E:Y9H401 4.1 0.0 1.0 H1 E:Y9H401 4.1 0.0 1.0 CG G:GLN351 4.1 54.5 1.0 CA I:SER352 4.2 45.3 1.0 H15 G:Y9H401 4.2 0.0 1.0 OE1 I:GLN351 4.2 62.7 1.0 H17 I:Y9H401 4.2 0.0 1.0 N I:SER352 4.2 47.9 1.0 C3 G:Y9H401 4.3 0.0 1.0 O G:GLN351 4.3 52.9 1.0 HB2 I:LYS353 4.4 35.9 1.0 H14 G:Y9H401 4.4 0.0 1.0 CD I:GLN351 4.4 59.0 1.0 C1 E:Y9H401 4.4 0.0 1.0 H2 E:Y9H401 4.4 0.0 1.0 HB2 G:LYS353 4.4 35.9 1.0 HB2 I:GLN351 4.5 55.7 1.0 H I:LYS353 4.5 38.8 1.0 HA G:SER352 4.5 46.8 1.0 CB I:GLN351 4.5 53.6 1.0 C I:SER352 4.5 46.1 1.0 N I:LYS353 4.6 39.5 1.0 CA I:GLN351 4.7 54.5 1.0 N G:LYS353 4.7 39.5 1.0 CD G:GLN351 4.7 59.0 1.0 F1 I:Y9H401 4.8 0.0 1.0 F1 E:Y9H401 4.8 0.0 1.0 H5 G:Y9H401 4.8 0.0 1.0 H15 I:Y9H401 4.8 0.0 1.0 H13 G:Y9H401 4.8 0.0 1.0 C6 G:Y9H401 4.8 0.0 1.0 OE1 G:GLN351 5.0 62.7 1.0 HG2 G:GLN351 5.0 55.6 1.0 H I:SER352 5.0 47.8 1.0 HA G:LYS353 5.0 36.8 1.0

Fluorine binding site 8 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ H:F401 b:0.0 occ:1.00 F1 H:Y9H401 0.0 0.0 1.0 C17 H:Y9H401 1.4 0.0 1.0 H19 H:Y9H401 2.0 0.0 1.0 H18 H:Y9H401 2.0 0.0 1.0 C1 H:Y9H401 2.4 0.0 1.0 HB2 H:GLN351 2.4 55.7 1.0 H17 H:Y9H401 2.5 0.0 1.0 HG3 J:GLN351 2.6 55.5 1.0 H2 H:Y9H401 2.7 0.0 1.0 O J:GLN351 2.8 52.9 1.0 H18 F:Y9H401 2.8 0.0 1.0 C2 H:Y9H401 2.9 0.0 1.0 O H:SER352 3.0 45.3 1.0 H H:SER352 3.0 47.8 1.0 H16 H:Y9H401 3.2 0.0 1.0 N H:SER352 3.3 47.9 1.0 CB H:GLN351 3.3 53.6 1.0 H1 H:Y9H401 3.3 0.0 1.0 HA J:SER352 3.5 46.8 1.0 HA H:GLN351 3.6 55.8 1.0 C H:GLN351 3.6 52.4 1.0 CG J:GLN351 3.6 54.5 1.0 C5 H:Y9H401 3.6 0.0 1.0 C J:GLN351 3.7 52.4 1.0 C H:SER352 3.7 46.1 1.0 CA H:GLN351 3.7 54.5 1.0 C17 F:Y9H401 3.8 0.0 1.0 HG3 H:GLN351 3.8 55.5 1.0 HG2 J:GLN351 3.8 55.6 1.0 HB3 H:GLN351 4.0 55.4 1.0 H19 F:Y9H401 4.1 0.0 1.0 CA H:SER352 4.1 45.3 1.0 H1 F:Y9H401 4.1 0.0 1.0 CG H:GLN351 4.1 54.5 1.0 OE1 J:GLN351 4.2 62.7 1.0 H15 H:Y9H401 4.2 0.0 1.0 CA J:SER352 4.2 45.3 1.0 H17 J:Y9H401 4.2 0.0 1.0 N J:SER352 4.2 47.9 1.0 C3 H:Y9H401 4.3 0.0 1.0 O H:GLN351 4.3 52.9 1.0 CD J:GLN351 4.4 59.0 1.0 H14 H:Y9H401 4.4 0.0 1.0 C1 F:Y9H401 4.4 0.0 1.0 H2 F:Y9H401 4.4 0.0 1.0 HB2 H:LYS353 4.4 35.9 1.0 HB2 J:GLN351 4.4 55.7 1.0 HB2 J:LYS353 4.4 35.9 1.0 CB J:GLN351 4.5 53.6 1.0 HA H:SER352 4.5 46.8 1.0 H J:LYS353 4.5 38.8 1.0 C J:SER352 4.5 46.1 1.0 CA J:GLN351 4.7 54.5 1.0 N J:LYS353 4.7 39.5 1.0 N H:LYS353 4.7 39.5 1.0 CD H:GLN351 4.7 59.0 1.0 F1 J:Y9H401 4.8 0.0 1.0 F1 F:Y9H401 4.8 0.0 1.0 H5 H:Y9H401 4.8 0.0 1.0 H13 H:Y9H401 4.8 0.0 1.0 C6 H:Y9H401 4.8 0.0 1.0 H15 J:Y9H401 4.9 0.0 1.0 OE1 H:GLN351 5.0 62.7 1.0 HG2 H:GLN351 5.0 55.6 1.0 H J:SER352 5.0 47.8 1.0 HA H:LYS353 5.0 36.8 1.0 H J:GLN351 5.0 55.7 1.0

Fluorine binding site 9 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ I:F401 b:0.0 occ:1.00 F1 I:Y9H401 0.0 0.0 1.0 C17 I:Y9H401 1.4 0.0 1.0 H18 I:Y9H401 2.0 0.0 1.0 H19 I:Y9H401 2.0 0.0 1.0 C1 I:Y9H401 2.4 0.0 1.0 HB2 I:GLN351 2.4 55.7 1.0 H17 I:Y9H401 2.5 0.0 1.0 HG3 K:GLN351 2.7 55.5 1.0 H2 I:Y9H401 2.7 0.0 1.0 H18 G:Y9H401 2.8 0.0 1.0 O K:GLN351 2.8 52.9 1.0 C2 I:Y9H401 2.9 0.0 1.0 O I:SER352 3.0 45.3 1.0 H I:SER352 3.0 47.8 1.0 H16 I:Y9H401 3.2 0.0 1.0 N I:SER352 3.3 47.9 1.0 CB I:GLN351 3.3 53.6 1.0 H1 I:Y9H401 3.3 0.0 1.0 HA K:SER352 3.5 46.8 1.0 HA I:GLN351 3.6 55.8 1.0 C I:GLN351 3.6 52.4 1.0 C5 I:Y9H401 3.6 0.0 1.0 CG K:GLN351 3.6 54.5 1.0 C K:GLN351 3.7 52.4 1.0 C I:SER352 3.7 46.1 1.0 CA I:GLN351 3.7 54.5 1.0 C17 G:Y9H401 3.8 0.0 1.0 HG3 I:GLN351 3.8 55.5 1.0 HG2 K:GLN351 3.9 55.6 1.0 HB3 I:GLN351 4.0 55.4 1.0 CA I:SER352 4.1 45.3 1.0 H19 G:Y9H401 4.1 0.0 1.0 H1 G:Y9H401 4.1 0.0 1.0 CG I:GLN351 4.1 54.5 1.0 CA K:SER352 4.2 45.3 1.0 H15 I:Y9H401 4.2 0.0 1.0 OE1 K:GLN351 4.2 62.7 1.0 H17 K:Y9H401 4.2 0.0 1.0 N K:SER352 4.2 47.9 1.0 C3 I:Y9H401 4.3 0.0 1.0 O I:GLN351 4.3 52.9 1.0 HB2 K:LYS353 4.4 35.9 1.0 H14 I:Y9H401 4.4 0.0 1.0 C1 G:Y9H401 4.4 0.0 1.0 CD K:GLN351 4.4 59.0 1.0 H2 G:Y9H401 4.4 0.0 1.0 HB2 I:LYS353 4.4 35.9 1.0 HB2 K:GLN351 4.5 55.7 1.0 H K:LYS353 4.5 38.8 1.0 HA I:SER352 4.5 46.8 1.0 CB K:GLN351 4.5 53.6 1.0 C K:SER352 4.5 46.1 1.0 N K:LYS353 4.6 39.5 1.0 CA K:GLN351 4.7 54.5 1.0 N I:LYS353 4.7 39.5 1.0 CD I:GLN351 4.7 59.0 1.0 F1 G:Y9H401 4.8 0.0 1.0 F1 K:Y9H401 4.8 0.0 1.0 H5 I:Y9H401 4.8 0.0 1.0 H15 K:Y9H401 4.8 0.0 1.0 H13 I:Y9H401 4.8 0.0 1.0 C6 I:Y9H401 4.8 0.0 1.0 HG2 I:GLN351 5.0 55.6 1.0 OE1 I:GLN351 5.0 62.7 1.0 H K:SER352 5.0 47.8 1.0 HA I:LYS353 5.0 36.8 1.0

Fluorine binding site 10 out of 23 in the Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Alzheimer'S Disease Paired-Helical Filament in Complex with Pet Tracer Gtp-1 within 5.0Å range: probe atom residue distance (Å) B Occ J:F401 b:0.0 occ:1.00 F1 J:Y9H401 0.0 0.0 1.0 C17 J:Y9H401 1.4 0.0 1.0 H19 J:Y9H401 2.0 0.0 1.0 H18 J:Y9H401 2.0 0.0 1.0 C1 J:Y9H401 2.4 0.0 1.0 HB2 J:GLN351 2.4 55.7 1.0 H17 J:Y9H401 2.5 0.0 1.0 HG3 L:GLN351 2.6 55.5 1.0 H2 J:Y9H401 2.7 0.0 1.0 O L:GLN351 2.8 52.9 1.0 H18 H:Y9H401 2.8 0.0 1.0 C2 J:Y9H401 2.9 0.0 1.0 O J:SER352 3.0 45.3 1.0 H J:SER352 3.0 47.8 1.0 H16 J:Y9H401 3.2 0.0 1.0 N J:SER352 3.3 47.9 1.0 CB J:GLN351 3.3 53.6 1.0 H1 J:Y9H401 3.3 0.0 1.0 HA L:SER352 3.5 46.8 1.0 HA J:GLN351 3.6 55.8 1.0 C J:GLN351 3.6 52.4 1.0 CG L:GLN351 3.6 54.5 1.0 C5 J:Y9H401 3.6 0.0 1.0 C L:GLN351 3.7 52.4 1.0 C J:SER352 3.7 46.1 1.0 CA J:GLN351 3.7 54.5 1.0 C17 H:Y9H401 3.8 0.0 1.0 HG3 J:GLN351 3.8 55.5 1.0 HG2 L:GLN351 3.8 55.6 1.0 HB3 J:GLN351 4.0 55.4 1.0 H19 H:Y9H401 4.1 0.0 1.0 CA J:SER352 4.1 45.3 1.0 H1 H:Y9H401 4.1 0.0 1.0 CG J:GLN351 4.1 54.5 1.0 OE1 L:GLN351 4.2 62.7 1.0 H15 J:Y9H401 4.2 0.0 1.0 CA L:SER352 4.2 45.3 1.0 H17 L:Y9H401 4.2 0.0 1.0 N L:SER352 4.2 47.9 1.0 C3 J:Y9H401 4.3 0.0 1.0 O J:GLN351 4.3 52.9 1.0 CD L:GLN351 4.4 59.0 1.0 H14 J:Y9H401 4.4 0.0 1.0 C1 H:Y9H401 4.4 0.0 1.0 H2 H:Y9H401 4.4 0.0 1.0 HB2 J:LYS353 4.4 35.9 1.0 HB2 L:GLN351 4.4 55.7 1.0 HB2 L:LYS353 4.4 35.9 1.0 CB L:GLN351 4.5 53.6 1.0 HA J:SER352 4.5 46.8 1.0 H L:LYS353 4.5 38.8 1.0 C L:SER352 4.5 46.1 1.0 CA L:GLN351 4.7 54.5 1.0 N L:LYS353 4.7 39.5 1.0 N J:LYS353 4.7 39.5 1.0 CD J:GLN351 4.7 59.0 1.0 F1 H:Y9H401 4.8 0.0 1.0 F1 L:Y9H401 4.8 0.0 1.0 H5 J:Y9H401 4.8 0.0 1.0 H13 J:Y9H401 4.8 0.0 1.0 C6 J:Y9H401 4.8 0.0 1.0 H15 L:Y9H401 4.9 0.0 1.0 HG2 J:GLN351 5.0 55.6 1.0 OE1 J:GLN351 5.0 62.7 1.0 H L:SER352 5.0 47.8 1.0 HA J:LYS353 5.0 36.8 1.0 H L:GLN351 5.0 55.7 1.0

G.E.Merz, M.J.Chalkley, S.K.Tan, E.Tse, J.Lee, S.B.Prusiner, N.A.Paras, W.F.Degrado, D.R.Southworth. Stacked Binding of A Pet Ligand to Alzheimer'S Tau Paired Helical Filaments. Nat Commun V. 14 3048 2023.
ISSN: ESSN 2041-1723
PubMed: 37236970
DOI: 10.1038/S41467-023-38537-Y