Fluorine in PDB 8fww: Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel

Other elements in 8fww:

The structure of Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 7 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel (pdb code 8fww). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel, PDB code: 8fww:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8fww

Go back to Fluorine Binding Sites List in 8fww
Fluorine binding site 1 out of 4 in the Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1001

b:21.0
occ:1.00
FAC A:2J91001 0.0 21.0 1.0
CAK A:2J91001 1.4 21.0 1.0
CAD A:2J91001 2.4 21.0 1.0
CAF A:2J91001 2.4 21.0 1.0
CG2 D:THR535 3.3 48.6 1.0
CA D:GLY763 3.3 44.2 1.0
CB D:PRO532 3.3 43.4 1.0
CG D:PRO532 3.4 43.4 1.0
O D:LYS762 3.5 46.8 1.0
CAE A:2J91001 3.6 21.0 1.0
CAM A:2J91001 3.7 21.0 1.0
CB D:THR535 3.9 48.6 1.0
N D:GLY763 3.9 44.2 1.0
CA D:THR535 4.0 48.6 1.0
C D:LYS762 4.0 46.8 1.0
O D:MET534 4.0 49.3 1.0
CAL A:2J91001 4.1 21.0 1.0
CAD A:2J91009 4.4 13.6 1.0
C D:GLY763 4.5 44.2 1.0
C D:MET534 4.5 49.3 1.0
N D:THR535 4.6 48.6 1.0
CAK A:2J91009 4.6 13.6 1.0
CD D:PRO532 4.6 43.4 1.0
FAC A:2J91009 4.8 13.6 1.0
CAE A:2J91009 4.8 13.6 1.0
CA D:PRO532 4.9 43.4 1.0
N D:TYR764 4.9 50.5 1.0

Fluorine binding site 2 out of 4 in 8fww

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Fluorine binding site 2 out of 4 in the Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1009

b:13.6
occ:1.00
FAC A:2J91009 0.0 13.6 1.0
CAK A:2J91009 1.4 13.6 1.0
CAD A:2J91009 2.4 13.6 1.0
CAF A:2J91009 2.4 13.6 1.0
CG A:PRO532 3.3 41.9 1.0
CG2 A:THR535 3.3 49.5 1.0
CB A:PRO532 3.3 41.9 1.0
O A:LYS762 3.4 54.5 1.0
CA A:GLY763 3.4 48.1 1.0
CAE A:2J91009 3.6 13.6 1.0
CAM A:2J91009 3.7 13.6 1.0
O A:MET534 3.8 44.7 1.0
C A:LYS762 4.0 54.5 1.0
N A:GLY763 4.0 48.1 1.0
CB A:THR535 4.1 49.5 1.0
CAL A:2J91009 4.1 13.6 1.0
CA A:THR535 4.2 49.5 1.0
CAD A:2J91001 4.3 21.0 1.0
C A:MET534 4.5 44.7 1.0
C A:GLY763 4.5 48.1 1.0
CAK A:2J91001 4.6 21.0 1.0
CD A:PRO532 4.6 41.9 1.0
CAE A:2J91001 4.7 21.0 1.0
N A:THR535 4.7 49.5 1.0
FAC A:2J91001 4.8 21.0 1.0
CA A:PRO532 4.8 41.9 1.0
N A:TYR764 4.9 49.0 1.0

Fluorine binding site 3 out of 4 in 8fww

Go back to Fluorine Binding Sites List in 8fww
Fluorine binding site 3 out of 4 in the Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1001

b:0.1
occ:1.00
FAC B:2J91001 0.0 0.1 1.0
CAK B:2J91001 1.4 0.1 1.0
CAF B:2J91001 2.4 0.1 1.0
CAD B:2J91001 2.4 0.1 1.0
CG2 C:THR535 3.3 48.4 1.0
CG C:PRO532 3.3 43.1 1.0
CB C:PRO532 3.3 43.1 1.0
O C:LYS762 3.4 54.0 1.0
CA C:GLY763 3.5 46.6 1.0
CAE B:2J91001 3.6 0.1 1.0
CAM B:2J91001 3.6 0.1 1.0
O C:MET534 3.9 43.8 1.0
C C:LYS762 4.1 54.0 1.0
CB C:THR535 4.1 48.4 1.0
CAL B:2J91001 4.1 0.1 1.0
N C:GLY763 4.2 46.6 1.0
CA C:THR535 4.2 48.4 1.0
CAD B:2J91004 4.3 20.7 1.0
CAK B:2J91004 4.5 20.7 1.0
C C:MET534 4.6 43.8 1.0
CD C:PRO532 4.6 43.1 1.0
C C:GLY763 4.7 46.6 1.0
CAE B:2J91004 4.7 20.7 1.0
FAC B:2J91004 4.7 20.7 1.0
N C:THR535 4.7 48.4 1.0
CA C:PRO532 4.8 43.1 1.0

Fluorine binding site 4 out of 4 in 8fww

Go back to Fluorine Binding Sites List in 8fww
Fluorine binding site 4 out of 4 in the Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1004

b:20.7
occ:1.00
FAC B:2J91004 0.0 20.7 1.0
CAK B:2J91004 1.4 20.7 1.0
CAD B:2J91004 2.4 20.7 1.0
CAF B:2J91004 2.4 20.7 1.0
CG2 B:THR535 3.2 49.2 1.0
CA B:GLY763 3.3 47.1 1.0
CB B:PRO532 3.4 45.3 1.0
CG B:PRO532 3.4 45.3 1.0
O B:LYS762 3.4 49.4 1.0
CAE B:2J91004 3.6 20.7 1.0
CAM B:2J91004 3.6 20.7 1.0
CB B:THR535 3.9 49.2 1.0
N B:GLY763 3.9 47.1 1.0
C B:LYS762 3.9 49.4 1.0
CA B:THR535 3.9 49.2 1.0
O B:MET534 4.0 50.9 1.0
CAL B:2J91004 4.1 20.7 1.0
CAD B:2J91001 4.4 0.1 1.0
C B:GLY763 4.5 47.1 1.0
C B:MET534 4.5 50.9 1.0
N B:THR535 4.6 49.2 1.0
CAK B:2J91001 4.6 0.1 1.0
CD B:PRO532 4.7 45.3 1.0
FAC B:2J91001 4.7 0.1 1.0
CAE B:2J91001 4.8 0.1 1.0
CA B:PRO532 4.9 45.3 1.0
N B:TYR764 4.9 52.2 1.0

Reference:

S.P.Gangwar, L.Y.Yen, M.V.Yelshanskaya, A.I.Sobolevsky. Positive and Negative Allosteric Modulation of GLUK2 Kainate Receptors By BPAM344 and Antiepileptic Perampanel. Cell Rep V. 42 12124 2023.
ISSN: ESSN 2211-1247
PubMed: 36857176
DOI: 10.1016/J.CELREP.2023.112124
Page generated: Tue Apr 25 20:18:21 2023

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