Fluorine in PDB 8g47: Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold

All present enzymatic activity of Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold:
3.6.5.2;

The structure of Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold (pdb code 8g47). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold, PDB code: 8g47:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold within 5.0Å range: probe atom residue distance (Å) B Occ B:F203 b:101.5 occ:1.00 F1 B:MOV203 0.0 101.5 1.0 C4 B:MOV203 1.3 99.9 1.0 F2 B:MOV203 1.9 99.9 1.0 C5 B:MOV203 2.3 100.0 1.0 C3 B:MOV203 2.4 100.5 1.0 C30 B:MOV203 2.8 100.7 1.0 C6 B:MOV203 3.0 100.5 1.0 OG1 B:THR58 3.5 70.7 1.0 C1 B:MOV203 3.6 101.5 1.0 N1 B:MOV203 3.6 103.6 1.0 CG1 B:VAL9 3.6 58.2 1.0 CB B:THR58 3.7 66.2 1.0 C2 B:MOV203 4.1 102.4 1.0 CG2 B:THR58 4.1 68.8 1.0 C29 B:MOV203 4.1 100.0 1.0 CE B:MET72 4.2 95.5 1.0 CB B:VAL9 4.2 55.7 1.0 CE1 B:TYR96 4.3 92.0 1.0 C26 B:MOV203 4.4 100.9 1.0 CD1 B:TYR96 4.6 94.7 1.0 C17 B:MOV203 4.8 93.5 1.0 CD B:ARG68 4.9 107.8 1.0 C7 B:MOV203 4.9 98.5 1.0 CA B:VAL9 4.9 49.5 1.0 SD B:MET72 5.0 105.4 1.0

Fluorine binding site 2 out of 2 in the Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Kras G12C Complex with Gdp and Amg 510 Imaged on A Cryo-Em Imaging Scaffold within 5.0Å range: probe atom residue distance (Å) B Occ B:F203 b:99.9 occ:1.00 F2 B:MOV203 0.0 99.9 1.0 C30 B:MOV203 1.4 100.7 1.0 F1 B:MOV203 1.9 101.5 1.0 C29 B:MOV203 2.3 100.0 1.0 C6 B:MOV203 2.4 100.5 1.0 C4 B:MOV203 2.7 99.9 1.0 C3 B:MOV203 2.9 100.5 1.0 CE B:MET72 3.2 95.5 1.0 CG1 B:VAL9 3.3 58.2 1.0 SD B:MET72 3.5 105.4 1.0 C28 B:MOV203 3.6 100.2 1.0 C26 B:MOV203 3.6 100.9 1.0 C5 B:MOV203 4.0 100.0 1.0 C27 B:MOV203 4.1 100.1 1.0 CB B:VAL9 4.2 55.7 1.0 N1 B:MOV203 4.2 103.6 1.0 CG B:MET72 4.4 96.0 1.0 CG2 B:THR58 4.6 68.8 1.0 OG1 B:THR58 4.6 70.7 1.0 CG1 B:ILE100 4.8 113.1 1.0 O3 B:MOV203 4.8 104.3 1.0 CB B:THR58 4.8 66.2 1.0 CD1 B:TYR96 4.9 94.7 1.0

R.Castells-Graells, K.Meador, M.A.Arbing, M.R.Sawaya, M.Gee, D.Cascio, E.Gleave, J.E.Debreczeni, J.Breed, K.Leopold, A.Patel, D.Jahagirdar, D.Lyons, S.Subramaniam, C.Phillips, T.O.Yeates. Structures of the Kras Protein Cancer Target at 3 Angstrom Resolution By Cryo-Em Scaffolding To Be Published.