Fluorine in PDB 8gj0: E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Enzymatic activity of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
All present enzymatic activity of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1):
2.7.7.7;
Other elements in 8gj0:
The structure of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
(pdb code 8gj0). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1), PDB code: 8gj0:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 1 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:100.1
occ:1.00
|
F1
|
B:ALF703
|
0.0
|
100.1
|
1.0
|
AL
|
B:ALF703
|
1.8
|
90.1
|
1.0
|
MG
|
B:MG702
|
2.1
|
72.2
|
1.0
|
F4
|
B:ALF703
|
2.5
|
95.6
|
1.0
|
F3
|
B:ALF703
|
2.5
|
83.9
|
1.0
|
O1A
|
B:ADP701
|
2.7
|
105.5
|
1.0
|
O1B
|
B:ADP701
|
2.7
|
84.9
|
1.0
|
HH12
|
C:ARG169
|
2.8
|
110.4
|
1.0
|
O2B
|
B:ADP701
|
3.0
|
108.1
|
1.0
|
PB
|
B:ADP701
|
3.3
|
81.2
|
1.0
|
PA
|
B:ADP701
|
3.3
|
105.5
|
1.0
|
HH12
|
B:ARG215
|
3.4
|
92.2
|
1.0
|
HH22
|
C:ARG169
|
3.4
|
111.5
|
1.0
|
O2A
|
B:ADP701
|
3.4
|
105.3
|
1.0
|
HH11
|
B:ARG215
|
3.5
|
90.3
|
1.0
|
F2
|
B:ALF703
|
3.6
|
84.8
|
1.0
|
NH1
|
C:ARG169
|
3.6
|
112.2
|
1.0
|
NH1
|
B:ARG215
|
3.8
|
92.7
|
1.0
|
O3A
|
B:ADP701
|
3.8
|
75.9
|
1.0
|
OE2
|
C:GLU144
|
3.9
|
139.1
|
1.0
|
OE1
|
C:GLU144
|
3.9
|
139.5
|
1.0
|
NH2
|
C:ARG169
|
4.1
|
113.1
|
1.0
|
OG1
|
B:THR52
|
4.1
|
78.6
|
1.0
|
CD
|
C:GLU144
|
4.1
|
141.2
|
1.0
|
HH11
|
C:ARG169
|
4.1
|
110.0
|
1.0
|
CZ
|
C:ARG169
|
4.3
|
110.5
|
1.0
|
HB
|
B:THR52
|
4.6
|
86.6
|
1.0
|
O3B
|
B:ADP701
|
4.7
|
89.3
|
1.0
|
H
|
B:GLY48
|
4.8
|
95.0
|
1.0
|
HH21
|
C:ARG169
|
4.8
|
111.3
|
1.0
|
O5'
|
B:ADP701
|
4.8
|
93.2
|
1.0
|
H
|
B:THR52
|
5.0
|
86.9
|
1.0
|
H5'1
|
B:ADP701
|
5.0
|
93.5
|
1.0
|
CB
|
B:THR52
|
5.0
|
81.4
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 2 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:84.8
occ:1.00
|
F2
|
B:ALF703
|
0.0
|
84.8
|
1.0
|
AL
|
B:ALF703
|
1.8
|
90.1
|
1.0
|
HZ1
|
B:LYS51
|
2.4
|
90.0
|
1.0
|
F3
|
B:ALF703
|
2.5
|
83.9
|
1.0
|
F4
|
B:ALF703
|
2.5
|
95.6
|
1.0
|
O1B
|
B:ADP701
|
2.7
|
84.9
|
1.0
|
HA
|
B:ARG47
|
2.9
|
103.4
|
1.0
|
HG21
|
B:THR157
|
3.1
|
98.9
|
1.0
|
HG22
|
B:THR157
|
3.1
|
97.8
|
1.0
|
NZ
|
B:LYS51
|
3.3
|
90.9
|
1.0
|
CG2
|
B:THR157
|
3.4
|
94.8
|
1.0
|
H
|
B:GLY48
|
3.5
|
95.0
|
1.0
|
HG23
|
B:THR157
|
3.5
|
98.2
|
1.0
|
HZ3
|
B:LYS51
|
3.6
|
90.2
|
1.0
|
F1
|
B:ALF703
|
3.6
|
100.1
|
1.0
|
PB
|
B:ADP701
|
3.8
|
81.2
|
1.0
|
HG22
|
C:THR165
|
3.8
|
114.5
|
1.0
|
HG21
|
C:THR165
|
3.8
|
114.0
|
1.0
|
HZ2
|
B:LYS51
|
3.8
|
91.7
|
1.0
|
HE2
|
B:LYS51
|
3.8
|
90.5
|
1.0
|
CA
|
B:ARG47
|
3.9
|
95.5
|
1.0
|
HH12
|
C:ARG169
|
3.9
|
110.4
|
1.0
|
HE3
|
B:LYS51
|
3.9
|
90.3
|
1.0
|
CE
|
B:LYS51
|
4.0
|
90.1
|
1.0
|
HB2
|
B:ARG47
|
4.1
|
104.3
|
1.0
|
O2B
|
B:ADP701
|
4.1
|
108.1
|
1.0
|
N
|
B:GLY48
|
4.2
|
88.8
|
1.0
|
CG2
|
C:THR165
|
4.3
|
115.2
|
1.0
|
O3B
|
B:ADP701
|
4.3
|
89.3
|
1.0
|
CB
|
B:ARG47
|
4.4
|
99.3
|
1.0
|
HB3
|
B:ARG47
|
4.4
|
103.0
|
1.0
|
O
|
B:THR46
|
4.5
|
114.2
|
1.0
|
NH1
|
C:ARG169
|
4.6
|
112.2
|
1.0
|
HH11
|
C:ARG169
|
4.6
|
110.0
|
1.0
|
C
|
B:ARG47
|
4.6
|
99.7
|
1.0
|
MG
|
B:MG702
|
4.7
|
72.2
|
1.0
|
N
|
B:ARG47
|
4.7
|
96.8
|
1.0
|
O1A
|
B:ADP701
|
4.8
|
105.5
|
1.0
|
OE2
|
B:GLU127
|
4.9
|
107.0
|
1.0
|
CB
|
B:THR157
|
4.9
|
95.5
|
1.0
|
HG23
|
C:THR165
|
4.9
|
113.7
|
1.0
|
C
|
B:THR46
|
5.0
|
108.6
|
1.0
|
HB
|
C:THR165
|
5.0
|
113.4
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 3 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:83.9
occ:1.00
|
F3
|
B:ALF703
|
0.0
|
83.9
|
1.0
|
AL
|
B:ALF703
|
1.8
|
90.1
|
1.0
|
HH12
|
C:ARG169
|
2.0
|
110.4
|
1.0
|
HH11
|
C:ARG169
|
2.5
|
110.0
|
1.0
|
NH1
|
C:ARG169
|
2.5
|
112.2
|
1.0
|
F2
|
B:ALF703
|
2.5
|
84.8
|
1.0
|
F1
|
B:ALF703
|
2.5
|
100.1
|
1.0
|
O1B
|
B:ADP701
|
2.7
|
84.9
|
1.0
|
HH11
|
B:ARG215
|
3.0
|
90.3
|
1.0
|
O1A
|
B:ADP701
|
3.3
|
105.5
|
1.0
|
HH12
|
B:ARG215
|
3.5
|
92.2
|
1.0
|
H
|
B:GLY48
|
3.5
|
95.0
|
1.0
|
NH1
|
B:ARG215
|
3.5
|
92.7
|
1.0
|
F4
|
B:ALF703
|
3.6
|
95.6
|
1.0
|
CZ
|
C:ARG169
|
3.8
|
110.5
|
1.0
|
HG22
|
C:THR165
|
3.8
|
114.5
|
1.0
|
HB2
|
B:ARG47
|
3.9
|
104.3
|
1.0
|
HH22
|
C:ARG169
|
4.1
|
111.5
|
1.0
|
HA
|
B:ARG47
|
4.1
|
103.4
|
1.0
|
HB
|
C:THR165
|
4.1
|
113.4
|
1.0
|
PB
|
B:ADP701
|
4.1
|
81.2
|
1.0
|
N
|
B:GLY48
|
4.2
|
88.8
|
1.0
|
HG21
|
C:THR165
|
4.2
|
114.0
|
1.0
|
HD3
|
B:ARG215
|
4.3
|
90.6
|
1.0
|
NH2
|
C:ARG169
|
4.4
|
113.1
|
1.0
|
CG2
|
C:THR165
|
4.4
|
115.2
|
1.0
|
MG
|
B:MG702
|
4.5
|
72.2
|
1.0
|
HD2
|
C:ARG169
|
4.5
|
110.8
|
1.0
|
O2B
|
B:ADP701
|
4.6
|
108.1
|
1.0
|
PA
|
B:ADP701
|
4.6
|
105.5
|
1.0
|
HD2
|
B:ARG215
|
4.6
|
89.4
|
1.0
|
HA2
|
B:GLY48
|
4.6
|
94.8
|
1.0
|
HZ1
|
B:LYS51
|
4.7
|
90.0
|
1.0
|
CZ
|
B:ARG215
|
4.7
|
102.5
|
1.0
|
CB
|
B:ARG47
|
4.7
|
99.3
|
1.0
|
CA
|
B:ARG47
|
4.7
|
95.5
|
1.0
|
CB
|
C:THR165
|
4.8
|
110.1
|
1.0
|
NE
|
C:ARG169
|
4.8
|
105.3
|
1.0
|
O3A
|
B:ADP701
|
4.8
|
75.9
|
1.0
|
HG3
|
C:ARG169
|
4.9
|
110.6
|
1.0
|
CD
|
B:ARG215
|
4.9
|
81.5
|
1.0
|
HG2
|
C:ARG169
|
4.9
|
110.4
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 4 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:95.6
occ:1.00
|
F4
|
B:ALF703
|
0.0
|
95.6
|
1.0
|
AL
|
B:ALF703
|
1.8
|
90.1
|
1.0
|
O2B
|
B:ADP701
|
2.1
|
108.1
|
1.0
|
MG
|
B:MG702
|
2.5
|
72.2
|
1.0
|
F1
|
B:ALF703
|
2.5
|
100.1
|
1.0
|
F2
|
B:ALF703
|
2.5
|
84.8
|
1.0
|
O1B
|
B:ADP701
|
2.7
|
84.9
|
1.0
|
HE2
|
B:LYS51
|
2.8
|
90.5
|
1.0
|
PB
|
B:ADP701
|
2.8
|
81.2
|
1.0
|
HZ1
|
B:LYS51
|
3.1
|
90.0
|
1.0
|
HZ3
|
B:LYS51
|
3.5
|
90.2
|
1.0
|
CE
|
B:LYS51
|
3.5
|
90.1
|
1.0
|
NZ
|
B:LYS51
|
3.5
|
90.9
|
1.0
|
F3
|
B:ALF703
|
3.6
|
83.9
|
1.0
|
HB2
|
B:LYS51
|
3.7
|
90.3
|
1.0
|
O3B
|
B:ADP701
|
3.7
|
89.3
|
1.0
|
HE3
|
B:LYS51
|
3.8
|
90.3
|
1.0
|
OG1
|
B:THR52
|
3.8
|
78.6
|
1.0
|
O3A
|
B:ADP701
|
4.2
|
75.9
|
1.0
|
H
|
B:THR52
|
4.2
|
86.9
|
1.0
|
HZ2
|
B:LYS51
|
4.4
|
91.7
|
1.0
|
HG23
|
B:THR157
|
4.4
|
98.2
|
1.0
|
OE2
|
B:GLU127
|
4.4
|
107.0
|
1.0
|
O1A
|
B:ADP701
|
4.4
|
105.5
|
1.0
|
HG22
|
B:THR157
|
4.4
|
97.8
|
1.0
|
HH12
|
C:ARG169
|
4.4
|
110.4
|
1.0
|
CB
|
B:LYS51
|
4.6
|
88.0
|
1.0
|
PA
|
B:ADP701
|
4.6
|
105.5
|
1.0
|
H
|
B:LYS51
|
4.7
|
89.5
|
1.0
|
OD1
|
B:ASP126
|
4.7
|
114.4
|
1.0
|
O2A
|
B:ADP701
|
4.8
|
105.3
|
1.0
|
CG2
|
B:THR157
|
4.8
|
94.8
|
1.0
|
CD
|
B:LYS51
|
4.8
|
90.4
|
1.0
|
H
|
B:GLY48
|
4.8
|
95.0
|
1.0
|
HB1
|
B:ALA155
|
4.8
|
87.8
|
1.0
|
HG21
|
B:THR157
|
4.8
|
98.9
|
1.0
|
OD2
|
B:ASP126
|
4.8
|
112.3
|
1.0
|
N
|
B:THR52
|
4.9
|
79.0
|
1.0
|
HG3
|
B:LYS51
|
4.9
|
88.9
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 5 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F701
b:112.7
occ:1.00
|
F1
|
D:ALF701
|
0.0
|
112.7
|
1.0
|
AL
|
D:ALF701
|
1.8
|
114.3
|
1.0
|
HH22
|
D:ARG169
|
2.1
|
95.5
|
1.0
|
MG
|
C:MG702
|
2.1
|
110.7
|
1.0
|
F4
|
D:ALF701
|
2.5
|
123.2
|
1.0
|
F3
|
D:ALF701
|
2.5
|
103.0
|
1.0
|
O1B
|
C:ADP701
|
2.7
|
111.8
|
1.0
|
NH2
|
D:ARG169
|
2.8
|
101.5
|
1.0
|
HH22
|
C:ARG215
|
2.9
|
103.6
|
1.0
|
O2B
|
C:ADP701
|
2.9
|
124.2
|
1.0
|
HH21
|
D:ARG169
|
3.0
|
96.4
|
1.0
|
O1A
|
C:ADP701
|
3.2
|
124.2
|
1.0
|
PB
|
C:ADP701
|
3.4
|
117.1
|
1.0
|
F2
|
D:ALF701
|
3.6
|
100.8
|
1.0
|
HH12
|
C:ARG215
|
3.6
|
105.5
|
1.0
|
NH2
|
C:ARG215
|
3.7
|
99.9
|
1.0
|
HH12
|
D:ARG169
|
3.8
|
95.9
|
1.0
|
OE1
|
D:GLU144
|
3.9
|
115.5
|
1.0
|
CZ
|
D:ARG169
|
3.9
|
98.8
|
1.0
|
OG1
|
C:THR52
|
4.1
|
87.3
|
1.0
|
PA
|
C:ADP701
|
4.2
|
114.6
|
1.0
|
HH21
|
C:ARG215
|
4.2
|
103.5
|
1.0
|
NH1
|
D:ARG169
|
4.2
|
96.8
|
1.0
|
O3A
|
C:ADP701
|
4.3
|
103.1
|
1.0
|
OE2
|
C:GLU127
|
4.3
|
127.9
|
1.0
|
NH1
|
C:ARG215
|
4.3
|
107.5
|
1.0
|
CZ
|
C:ARG215
|
4.5
|
100.1
|
1.0
|
CD
|
D:GLU144
|
4.5
|
117.5
|
1.0
|
OE2
|
D:GLU144
|
4.5
|
118.3
|
1.0
|
O3B
|
C:ADP701
|
4.6
|
113.5
|
1.0
|
O2A
|
C:ADP701
|
4.7
|
110.1
|
1.0
|
HB
|
C:THR52
|
4.8
|
91.2
|
1.0
|
OD2
|
C:ASP126
|
4.8
|
135.4
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 6 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F701
b:100.8
occ:1.00
|
F2
|
D:ALF701
|
0.0
|
100.8
|
1.0
|
AL
|
D:ALF701
|
1.8
|
114.3
|
1.0
|
F3
|
D:ALF701
|
2.5
|
103.0
|
1.0
|
F4
|
D:ALF701
|
2.5
|
123.2
|
1.0
|
HA
|
C:ARG47
|
2.6
|
101.4
|
1.0
|
HZ3
|
C:LYS51
|
2.7
|
102.3
|
1.0
|
O1B
|
C:ADP701
|
2.7
|
111.8
|
1.0
|
HG22
|
C:THR157
|
3.0
|
119.8
|
1.0
|
H
|
C:GLY48
|
3.3
|
105.4
|
1.0
|
HG21
|
C:THR157
|
3.4
|
120.5
|
1.0
|
NZ
|
C:LYS51
|
3.4
|
100.9
|
1.0
|
HE3
|
C:LYS51
|
3.5
|
102.2
|
1.0
|
PB
|
C:ADP701
|
3.5
|
117.1
|
1.0
|
CG2
|
C:THR157
|
3.5
|
119.6
|
1.0
|
CA
|
C:ARG47
|
3.5
|
99.5
|
1.0
|
O3B
|
C:ADP701
|
3.6
|
113.5
|
1.0
|
F1
|
D:ALF701
|
3.6
|
112.7
|
1.0
|
HG23
|
C:THR157
|
3.7
|
120.2
|
1.0
|
HZ1
|
C:LYS51
|
3.7
|
103.3
|
1.0
|
HB2
|
C:ARG47
|
3.8
|
102.2
|
1.0
|
HE2
|
C:LYS51
|
3.8
|
103.0
|
1.0
|
CE
|
C:LYS51
|
3.8
|
99.4
|
1.0
|
O
|
C:THR46
|
3.8
|
100.7
|
1.0
|
HH22
|
C:ARG215
|
3.9
|
103.6
|
1.0
|
HB3
|
C:ARG47
|
3.9
|
101.7
|
1.0
|
HG22
|
D:THR165
|
4.0
|
104.9
|
1.0
|
CB
|
C:ARG47
|
4.0
|
100.6
|
1.0
|
N
|
C:GLY48
|
4.0
|
103.1
|
1.0
|
HH21
|
C:ARG215
|
4.0
|
103.5
|
1.0
|
O2B
|
C:ADP701
|
4.0
|
124.2
|
1.0
|
HG21
|
D:THR165
|
4.1
|
105.0
|
1.0
|
HH12
|
D:ARG169
|
4.1
|
95.9
|
1.0
|
HZ2
|
C:LYS51
|
4.1
|
103.3
|
1.0
|
NH2
|
C:ARG215
|
4.3
|
99.9
|
1.0
|
HH22
|
D:ARG169
|
4.3
|
95.5
|
1.0
|
C
|
C:ARG47
|
4.4
|
98.7
|
1.0
|
N
|
C:ARG47
|
4.4
|
101.4
|
1.0
|
C
|
C:THR46
|
4.5
|
102.9
|
1.0
|
CG2
|
D:THR165
|
4.5
|
105.7
|
1.0
|
MG
|
C:MG702
|
4.8
|
110.7
|
1.0
|
CB
|
C:THR157
|
4.9
|
118.9
|
1.0
|
O3A
|
C:ADP701
|
5.0
|
103.1
|
1.0
|
NH1
|
D:ARG169
|
5.0
|
96.8
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 7 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F701
b:103.0
occ:1.00
|
F3
|
D:ALF701
|
0.0
|
103.0
|
1.0
|
HH22
|
C:ARG215
|
1.8
|
103.6
|
1.0
|
AL
|
D:ALF701
|
1.8
|
114.3
|
1.0
|
HH12
|
D:ARG169
|
1.8
|
95.9
|
1.0
|
HH22
|
D:ARG169
|
2.1
|
95.5
|
1.0
|
NH2
|
C:ARG215
|
2.4
|
99.9
|
1.0
|
HH21
|
C:ARG215
|
2.5
|
103.5
|
1.0
|
F2
|
D:ALF701
|
2.5
|
100.8
|
1.0
|
F1
|
D:ALF701
|
2.5
|
112.7
|
1.0
|
NH1
|
D:ARG169
|
2.6
|
96.8
|
1.0
|
O1B
|
C:ADP701
|
2.7
|
111.8
|
1.0
|
NH2
|
D:ARG169
|
2.8
|
101.5
|
1.0
|
CZ
|
D:ARG169
|
3.1
|
98.8
|
1.0
|
HH11
|
D:ARG169
|
3.3
|
95.3
|
1.0
|
HG22
|
D:THR165
|
3.5
|
104.9
|
1.0
|
HH21
|
D:ARG169
|
3.6
|
96.4
|
1.0
|
F4
|
D:ALF701
|
3.6
|
123.2
|
1.0
|
CZ
|
C:ARG215
|
3.7
|
100.1
|
1.0
|
HB2
|
C:ARG47
|
3.8
|
102.2
|
1.0
|
HH12
|
C:ARG215
|
3.8
|
105.5
|
1.0
|
HG21
|
D:THR165
|
3.8
|
105.0
|
1.0
|
H
|
C:GLY48
|
3.9
|
105.4
|
1.0
|
HB
|
D:THR165
|
3.9
|
104.7
|
1.0
|
O1A
|
C:ADP701
|
4.0
|
124.2
|
1.0
|
CG2
|
D:THR165
|
4.1
|
105.7
|
1.0
|
HA
|
C:ARG47
|
4.1
|
101.4
|
1.0
|
PB
|
C:ADP701
|
4.1
|
117.1
|
1.0
|
NH1
|
C:ARG215
|
4.1
|
107.5
|
1.0
|
NE
|
D:ARG169
|
4.4
|
95.5
|
1.0
|
CB
|
C:ARG47
|
4.5
|
100.6
|
1.0
|
MG
|
C:MG702
|
4.5
|
110.7
|
1.0
|
HB3
|
C:ARG47
|
4.5
|
101.7
|
1.0
|
CB
|
D:THR165
|
4.5
|
105.3
|
1.0
|
O2B
|
C:ADP701
|
4.6
|
124.2
|
1.0
|
N
|
C:GLY48
|
4.6
|
103.1
|
1.0
|
HE
|
C:ARG215
|
4.7
|
103.6
|
1.0
|
NE
|
C:ARG215
|
4.7
|
96.7
|
1.0
|
CA
|
C:ARG47
|
4.7
|
99.5
|
1.0
|
HG21
|
C:THR157
|
4.8
|
120.5
|
1.0
|
HD22
|
D:LEU140
|
4.9
|
99.1
|
1.0
|
OE2
|
C:GLU127
|
4.9
|
127.9
|
1.0
|
HE
|
D:ARG169
|
4.9
|
96.1
|
1.0
|
HG23
|
D:THR165
|
4.9
|
104.0
|
1.0
|
HD13
|
D:LEU140
|
4.9
|
99.1
|
1.0
|
HG3
|
D:ARG169
|
5.0
|
96.1
|
1.0
|
O3B
|
C:ADP701
|
5.0
|
113.5
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 8 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F701
b:123.2
occ:1.00
|
F4
|
D:ALF701
|
0.0
|
123.2
|
1.0
|
AL
|
D:ALF701
|
1.8
|
114.3
|
1.0
|
O2B
|
C:ADP701
|
2.1
|
124.2
|
1.0
|
F1
|
D:ALF701
|
2.5
|
112.7
|
1.0
|
F2
|
D:ALF701
|
2.5
|
100.8
|
1.0
|
HE3
|
C:LYS51
|
2.6
|
102.2
|
1.0
|
PB
|
C:ADP701
|
2.6
|
117.1
|
1.0
|
MG
|
C:MG702
|
2.6
|
110.7
|
1.0
|
O1B
|
C:ADP701
|
2.7
|
111.8
|
1.0
|
O3B
|
C:ADP701
|
3.1
|
113.5
|
1.0
|
CE
|
C:LYS51
|
3.4
|
99.4
|
1.0
|
HZ3
|
C:LYS51
|
3.6
|
102.3
|
1.0
|
F3
|
D:ALF701
|
3.6
|
103.0
|
1.0
|
HB2
|
C:LYS51
|
3.6
|
102.1
|
1.0
|
HE2
|
C:LYS51
|
3.7
|
103.0
|
1.0
|
HZ1
|
C:LYS51
|
3.7
|
103.3
|
1.0
|
NZ
|
C:LYS51
|
3.8
|
100.9
|
1.0
|
OG1
|
C:THR52
|
4.0
|
87.3
|
1.0
|
O3A
|
C:ADP701
|
4.1
|
103.1
|
1.0
|
H
|
C:THR52
|
4.1
|
92.8
|
1.0
|
HH22
|
D:ARG169
|
4.3
|
95.5
|
1.0
|
HG22
|
C:THR157
|
4.4
|
119.8
|
1.0
|
HH22
|
C:ARG215
|
4.5
|
103.6
|
1.0
|
HG23
|
C:THR157
|
4.5
|
120.2
|
1.0
|
H
|
C:LYS51
|
4.5
|
103.3
|
1.0
|
O1A
|
C:ADP701
|
4.5
|
124.2
|
1.0
|
CB
|
C:LYS51
|
4.6
|
100.4
|
1.0
|
HD2
|
C:LYS51
|
4.6
|
102.9
|
1.0
|
CD
|
C:LYS51
|
4.6
|
106.8
|
1.0
|
H
|
C:GLY48
|
4.7
|
105.4
|
1.0
|
OE2
|
C:GLU127
|
4.7
|
127.9
|
1.0
|
HZ2
|
C:LYS51
|
4.7
|
103.3
|
1.0
|
HB1
|
C:ALA155
|
4.7
|
109.6
|
1.0
|
N
|
C:THR52
|
4.8
|
85.6
|
1.0
|
HA
|
C:ARG47
|
4.8
|
101.4
|
1.0
|
CG2
|
C:THR157
|
4.9
|
119.6
|
1.0
|
PA
|
C:ADP701
|
4.9
|
114.6
|
1.0
|
HB
|
C:THR52
|
4.9
|
91.2
|
1.0
|
OD1
|
C:ASP126
|
5.0
|
131.8
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 9 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F704
b:121.0
occ:1.00
|
F1
|
D:ALF704
|
0.0
|
121.0
|
1.0
|
AL
|
D:ALF704
|
1.8
|
107.4
|
1.0
|
MG
|
D:MG703
|
2.1
|
109.8
|
1.0
|
F4
|
D:ALF704
|
2.5
|
104.7
|
1.0
|
F3
|
D:ALF704
|
2.5
|
106.2
|
1.0
|
HH22
|
D:ARG215
|
2.7
|
101.1
|
1.0
|
O1B
|
D:ADP702
|
2.8
|
94.9
|
1.0
|
O2B
|
D:ADP702
|
2.8
|
120.8
|
1.0
|
O3A
|
D:ADP702
|
2.9
|
102.9
|
1.0
|
PB
|
D:ADP702
|
3.0
|
113.1
|
1.0
|
HH22
|
E:ARG158
|
3.0
|
96.8
|
1.0
|
NH2
|
D:ARG215
|
3.2
|
102.4
|
1.0
|
HH21
|
D:ARG215
|
3.6
|
100.3
|
1.0
|
F2
|
D:ALF704
|
3.6
|
97.5
|
1.0
|
HH12
|
D:ARG215
|
3.6
|
100.4
|
1.0
|
NH2
|
E:ARG158
|
3.7
|
99.6
|
1.0
|
HG1
|
D:THR52
|
3.8
|
84.2
|
1.0
|
OE2
|
E:GLU133
|
3.8
|
116.9
|
1.0
|
HH21
|
E:ARG158
|
3.9
|
98.0
|
1.0
|
OE1
|
E:GLU133
|
4.0
|
115.7
|
1.0
|
CZ
|
D:ARG215
|
4.0
|
97.0
|
1.0
|
NH1
|
D:ARG215
|
4.1
|
100.5
|
1.0
|
CD
|
E:GLU133
|
4.1
|
115.2
|
1.0
|
OG1
|
D:THR52
|
4.2
|
81.5
|
1.0
|
HH12
|
E:ARG158
|
4.2
|
97.4
|
1.0
|
OE2
|
D:GLU127
|
4.4
|
103.8
|
1.0
|
PA
|
D:ADP702
|
4.4
|
91.0
|
1.0
|
O3B
|
D:ADP702
|
4.5
|
111.7
|
1.0
|
CZ
|
E:ARG158
|
4.6
|
92.5
|
1.0
|
NH1
|
E:ARG158
|
4.7
|
89.8
|
1.0
|
HZ3
|
D:LYS51
|
4.7
|
84.7
|
1.0
|
O5'
|
D:ADP702
|
4.8
|
108.2
|
1.0
|
H
|
D:GLY48
|
4.8
|
102.7
|
1.0
|
HH11
|
D:ARG215
|
4.8
|
100.4
|
1.0
|
HB
|
D:THR52
|
4.9
|
85.0
|
1.0
|
OD2
|
D:ASP126
|
5.0
|
118.0
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 8gj0
Go back to
Fluorine Binding Sites List in 8gj0
Fluorine binding site 10 out
of 12 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F704
b:97.5
occ:1.00
|
F2
|
D:ALF704
|
0.0
|
97.5
|
1.0
|
AL
|
D:ALF704
|
1.8
|
107.4
|
1.0
|
F3
|
D:ALF704
|
2.5
|
106.2
|
1.0
|
F4
|
D:ALF704
|
2.5
|
104.7
|
1.0
|
HZ3
|
D:LYS51
|
2.7
|
84.7
|
1.0
|
O1B
|
D:ADP702
|
2.7
|
94.9
|
1.0
|
HA
|
D:ARG47
|
2.9
|
110.3
|
1.0
|
H
|
D:GLY48
|
3.1
|
102.7
|
1.0
|
HG22
|
E:THR154
|
3.3
|
107.3
|
1.0
|
HB
|
D:THR157
|
3.6
|
101.7
|
1.0
|
NZ
|
D:LYS51
|
3.6
|
89.9
|
1.0
|
F1
|
D:ALF704
|
3.6
|
121.0
|
1.0
|
HG21
|
E:THR154
|
3.6
|
106.7
|
1.0
|
HH22
|
E:ARG158
|
3.8
|
96.8
|
1.0
|
CA
|
D:ARG47
|
3.8
|
107.5
|
1.0
|
N
|
D:GLY48
|
3.8
|
108.8
|
1.0
|
CG2
|
E:THR154
|
3.9
|
105.8
|
1.0
|
HH12
|
D:ARG215
|
3.9
|
100.4
|
1.0
|
HZ2
|
D:LYS51
|
4.0
|
86.2
|
1.0
|
PB
|
D:ADP702
|
4.0
|
113.1
|
1.0
|
HZ1
|
D:LYS51
|
4.0
|
86.3
|
1.0
|
HH21
|
E:ARG158
|
4.0
|
98.0
|
1.0
|
HB2
|
D:ARG47
|
4.1
|
110.2
|
1.0
|
HE3
|
D:LYS51
|
4.1
|
84.3
|
1.0
|
HE2
|
D:LYS51
|
4.2
|
85.2
|
1.0
|
O2B
|
D:ADP702
|
4.2
|
120.8
|
1.0
|
HB3
|
D:ARG47
|
4.2
|
109.8
|
1.0
|
CE
|
D:LYS51
|
4.3
|
88.2
|
1.0
|
NH2
|
E:ARG158
|
4.3
|
99.6
|
1.0
|
HG21
|
D:THR157
|
4.3
|
101.0
|
1.0
|
CB
|
D:ARG47
|
4.3
|
105.1
|
1.0
|
HB
|
E:THR154
|
4.3
|
106.6
|
1.0
|
CB
|
D:THR157
|
4.4
|
104.3
|
1.0
|
C
|
D:ARG47
|
4.4
|
114.0
|
1.0
|
O
|
D:THR46
|
4.4
|
97.6
|
1.0
|
OE2
|
D:GLU127
|
4.5
|
103.8
|
1.0
|
NH1
|
D:ARG215
|
4.6
|
100.5
|
1.0
|
OG1
|
D:THR157
|
4.6
|
101.1
|
1.0
|
HG23
|
E:THR154
|
4.7
|
106.9
|
1.0
|
HG1
|
D:THR157
|
4.7
|
101.8
|
1.0
|
CB
|
E:THR154
|
4.7
|
102.9
|
1.0
|
CG2
|
D:THR157
|
4.7
|
97.8
|
1.0
|
N
|
D:ARG47
|
4.8
|
102.2
|
1.0
|
HA2
|
D:GLY48
|
4.8
|
101.0
|
1.0
|
HG22
|
D:THR157
|
4.8
|
100.7
|
1.0
|
HH11
|
D:ARG215
|
4.9
|
100.4
|
1.0
|
CA
|
D:GLY48
|
4.9
|
99.8
|
1.0
|
HH22
|
D:ARG215
|
5.0
|
101.1
|
1.0
|
C
|
D:THR46
|
5.0
|
94.3
|
1.0
|
O3B
|
D:ADP702
|
5.0
|
111.7
|
1.0
|
MG
|
D:MG703
|
5.0
|
109.8
|
1.0
|
O3A
|
D:ADP702
|
5.0
|
102.9
|
1.0
|
|
Reference:
Z.-Q.Xu,
A.J.Oakley,
N.E.Dixon.
Structural Characterisation of the Complete Cycle of Sliding Clamp Loading in E. Coli To Be Published.
Page generated: Fri Aug 2 19:47:45 2024
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