Fluorine in PDB 8gj3: E. Coli Clamp Loader on Primed Template Dna
Enzymatic activity of E. Coli Clamp Loader on Primed Template Dna
All present enzymatic activity of E. Coli Clamp Loader on Primed Template Dna:
2.7.7.7;
Other elements in 8gj3:
The structure of E. Coli Clamp Loader on Primed Template Dna also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the E. Coli Clamp Loader on Primed Template Dna
(pdb code 8gj3). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
E. Coli Clamp Loader on Primed Template Dna, PDB code: 8gj3:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 1 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:98.3
occ:1.00
|
F1
|
B:ALF703
|
0.0
|
98.3
|
1.0
|
AL
|
B:ALF703
|
1.8
|
89.9
|
1.0
|
MG
|
B:MG702
|
2.1
|
89.6
|
1.0
|
HH22
|
C:ARG169
|
2.4
|
84.2
|
1.0
|
F4
|
B:ALF703
|
2.5
|
93.5
|
1.0
|
F3
|
B:ALF703
|
2.5
|
73.8
|
1.0
|
O2B
|
B:ADP701
|
2.7
|
83.1
|
1.0
|
HH21
|
C:ARG169
|
2.8
|
85.3
|
1.0
|
HH22
|
B:ARG215
|
2.8
|
95.8
|
1.0
|
NH2
|
C:ARG169
|
2.8
|
84.0
|
1.0
|
O1B
|
B:ADP701
|
3.0
|
96.2
|
1.0
|
PB
|
B:ADP701
|
3.4
|
80.0
|
1.0
|
O2A
|
B:ADP701
|
3.4
|
105.7
|
1.0
|
F2
|
B:ALF703
|
3.6
|
86.5
|
1.0
|
NH2
|
B:ARG215
|
3.6
|
108.9
|
1.0
|
HH21
|
B:ARG215
|
3.9
|
95.5
|
1.0
|
OE1
|
C:GLU144
|
4.0
|
102.0
|
1.0
|
CZ
|
C:ARG169
|
4.1
|
87.8
|
1.0
|
OG1
|
B:THR52
|
4.1
|
88.7
|
1.0
|
HH12
|
B:ARG215
|
4.1
|
93.3
|
1.0
|
OE2
|
B:GLU127
|
4.2
|
124.3
|
1.0
|
PA
|
B:ADP701
|
4.3
|
105.6
|
1.0
|
O3A
|
B:ADP701
|
4.3
|
83.7
|
1.0
|
HH12
|
C:ARG169
|
4.4
|
86.6
|
1.0
|
OE2
|
C:GLU144
|
4.6
|
99.0
|
1.0
|
HZ1
|
B:LYS51
|
4.6
|
87.1
|
1.0
|
CZ
|
B:ARG215
|
4.6
|
96.0
|
1.0
|
O3B
|
B:ADP701
|
4.6
|
94.2
|
1.0
|
HB
|
B:THR52
|
4.7
|
85.9
|
1.0
|
CD
|
C:GLU144
|
4.7
|
100.1
|
1.0
|
NH1
|
C:ARG169
|
4.7
|
91.0
|
1.0
|
O1A
|
B:ADP701
|
4.7
|
96.4
|
1.0
|
NH1
|
B:ARG215
|
4.7
|
88.7
|
1.0
|
H
|
B:GLY48
|
4.8
|
89.9
|
1.0
|
HZ3
|
B:LYS51
|
4.9
|
87.3
|
1.0
|
HE
|
C:ARG169
|
5.0
|
85.1
|
1.0
|
CB
|
B:THR52
|
5.0
|
82.6
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 2 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:86.5
occ:1.00
|
F2
|
B:ALF703
|
0.0
|
86.5
|
1.0
|
AL
|
B:ALF703
|
1.8
|
89.9
|
1.0
|
HZ1
|
B:LYS51
|
1.8
|
87.1
|
1.0
|
HA
|
B:ARG47
|
2.5
|
100.0
|
1.0
|
F4
|
B:ALF703
|
2.5
|
93.5
|
1.0
|
F3
|
B:ALF703
|
2.5
|
73.8
|
1.0
|
NZ
|
B:LYS51
|
2.6
|
83.8
|
1.0
|
H
|
B:GLY48
|
2.6
|
89.9
|
1.0
|
HZ3
|
B:LYS51
|
2.7
|
87.3
|
1.0
|
O2B
|
B:ADP701
|
2.8
|
83.1
|
1.0
|
HZ2
|
B:LYS51
|
2.9
|
86.9
|
1.0
|
HG21
|
B:THR157
|
3.2
|
101.3
|
1.0
|
N
|
B:GLY48
|
3.4
|
93.0
|
1.0
|
CA
|
B:ARG47
|
3.4
|
91.2
|
1.0
|
PB
|
B:ADP701
|
3.5
|
80.0
|
1.0
|
HG23
|
B:THR157
|
3.5
|
102.2
|
1.0
|
O3B
|
B:ADP701
|
3.6
|
94.2
|
1.0
|
F1
|
B:ALF703
|
3.6
|
98.3
|
1.0
|
HB2
|
B:ARG47
|
3.6
|
100.2
|
1.0
|
HH21
|
B:ARG215
|
3.7
|
95.5
|
1.0
|
CG2
|
B:THR157
|
3.7
|
102.7
|
1.0
|
CE
|
B:LYS51
|
3.7
|
79.0
|
1.0
|
HG22
|
B:THR157
|
3.8
|
101.9
|
1.0
|
HE2
|
B:LYS51
|
3.8
|
85.1
|
1.0
|
HH22
|
B:ARG215
|
3.9
|
95.8
|
1.0
|
C
|
B:ARG47
|
3.9
|
97.4
|
1.0
|
HE3
|
B:LYS51
|
3.9
|
86.5
|
1.0
|
O1B
|
B:ADP701
|
4.0
|
96.2
|
1.0
|
CB
|
B:ARG47
|
4.0
|
95.1
|
1.0
|
HH22
|
C:ARG169
|
4.1
|
84.2
|
1.0
|
NH2
|
B:ARG215
|
4.1
|
108.9
|
1.0
|
O
|
B:THR46
|
4.2
|
107.2
|
1.0
|
HB3
|
B:ARG47
|
4.4
|
100.8
|
1.0
|
N
|
B:ARG47
|
4.4
|
92.7
|
1.0
|
HA2
|
B:GLY48
|
4.4
|
88.5
|
1.0
|
H
|
B:VAL49
|
4.4
|
88.8
|
1.0
|
CA
|
B:GLY48
|
4.5
|
86.0
|
1.0
|
HH12
|
C:ARG169
|
4.5
|
86.6
|
1.0
|
HG22
|
C:THR165
|
4.6
|
94.4
|
1.0
|
HG21
|
C:THR165
|
4.6
|
95.1
|
1.0
|
C
|
B:THR46
|
4.7
|
102.8
|
1.0
|
MG
|
B:MG702
|
4.8
|
89.6
|
1.0
|
HG3
|
B:LYS51
|
4.8
|
86.6
|
1.0
|
HB2
|
B:LYS51
|
4.9
|
87.7
|
1.0
|
NH2
|
C:ARG169
|
4.9
|
84.0
|
1.0
|
O3A
|
B:ADP701
|
5.0
|
83.7
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 3 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:73.8
occ:1.00
|
F3
|
B:ALF703
|
0.0
|
73.8
|
1.0
|
HH22
|
C:ARG169
|
1.8
|
84.2
|
1.0
|
AL
|
B:ALF703
|
1.8
|
89.9
|
1.0
|
HH22
|
B:ARG215
|
2.1
|
95.8
|
1.0
|
HH21
|
B:ARG215
|
2.2
|
95.5
|
1.0
|
HH12
|
C:ARG169
|
2.3
|
86.6
|
1.0
|
NH2
|
B:ARG215
|
2.4
|
108.9
|
1.0
|
NH2
|
C:ARG169
|
2.5
|
84.0
|
1.0
|
F2
|
B:ALF703
|
2.5
|
86.5
|
1.0
|
F1
|
B:ALF703
|
2.5
|
98.3
|
1.0
|
O2B
|
B:ADP701
|
2.8
|
83.1
|
1.0
|
NH1
|
C:ARG169
|
3.0
|
91.0
|
1.0
|
CZ
|
C:ARG169
|
3.1
|
87.8
|
1.0
|
HH21
|
C:ARG169
|
3.2
|
85.3
|
1.0
|
H
|
B:GLY48
|
3.3
|
89.9
|
1.0
|
F4
|
B:ALF703
|
3.6
|
93.5
|
1.0
|
CZ
|
B:ARG215
|
3.6
|
96.0
|
1.0
|
HH11
|
C:ARG169
|
3.7
|
85.6
|
1.0
|
HB2
|
B:ARG47
|
3.8
|
100.2
|
1.0
|
HB
|
C:THR165
|
3.8
|
94.4
|
1.0
|
N
|
B:GLY48
|
4.0
|
93.0
|
1.0
|
HA
|
B:ARG47
|
4.1
|
100.0
|
1.0
|
O2A
|
B:ADP701
|
4.1
|
105.7
|
1.0
|
PB
|
B:ADP701
|
4.1
|
80.0
|
1.0
|
HH12
|
B:ARG215
|
4.2
|
93.3
|
1.0
|
HZ1
|
B:LYS51
|
4.3
|
87.1
|
1.0
|
HD21
|
C:LEU140
|
4.3
|
89.2
|
1.0
|
HE
|
B:ARG215
|
4.3
|
93.9
|
1.0
|
NH1
|
B:ARG215
|
4.4
|
88.7
|
1.0
|
NE
|
C:ARG169
|
4.4
|
82.8
|
1.0
|
HA2
|
B:GLY48
|
4.4
|
88.5
|
1.0
|
HG22
|
C:THR165
|
4.4
|
94.4
|
1.0
|
NE
|
B:ARG215
|
4.5
|
93.5
|
1.0
|
HG21
|
C:THR165
|
4.5
|
95.1
|
1.0
|
MG
|
B:MG702
|
4.5
|
89.6
|
1.0
|
O1B
|
B:ADP701
|
4.5
|
96.2
|
1.0
|
CB
|
B:ARG47
|
4.6
|
95.1
|
1.0
|
CB
|
C:THR165
|
4.7
|
91.9
|
1.0
|
CA
|
B:ARG47
|
4.7
|
91.2
|
1.0
|
HD11
|
C:LEU140
|
4.7
|
88.9
|
1.0
|
CG2
|
C:THR165
|
4.7
|
98.0
|
1.0
|
CA
|
B:GLY48
|
4.8
|
86.0
|
1.0
|
HE
|
C:ARG169
|
4.8
|
85.1
|
1.0
|
OE2
|
B:GLU127
|
4.8
|
124.3
|
1.0
|
HG
|
C:LEU140
|
4.9
|
89.9
|
1.0
|
C
|
B:ARG47
|
4.9
|
97.4
|
1.0
|
HA
|
C:THR165
|
4.9
|
93.8
|
1.0
|
HZ3
|
B:LYS51
|
4.9
|
87.3
|
1.0
|
O3B
|
B:ADP701
|
5.0
|
94.2
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 4 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F703
b:93.5
occ:1.00
|
F4
|
B:ALF703
|
0.0
|
93.5
|
1.0
|
AL
|
B:ALF703
|
1.8
|
89.9
|
1.0
|
O1B
|
B:ADP701
|
2.1
|
96.2
|
1.0
|
HZ1
|
B:LYS51
|
2.5
|
87.1
|
1.0
|
F2
|
B:ALF703
|
2.5
|
86.5
|
1.0
|
F1
|
B:ALF703
|
2.5
|
98.3
|
1.0
|
MG
|
B:MG702
|
2.6
|
89.6
|
1.0
|
PB
|
B:ADP701
|
2.6
|
80.0
|
1.0
|
HZ3
|
B:LYS51
|
2.7
|
87.3
|
1.0
|
HE2
|
B:LYS51
|
2.8
|
85.1
|
1.0
|
O2B
|
B:ADP701
|
2.8
|
83.1
|
1.0
|
NZ
|
B:LYS51
|
2.9
|
83.8
|
1.0
|
O3B
|
B:ADP701
|
3.1
|
94.2
|
1.0
|
HB2
|
B:LYS51
|
3.2
|
87.7
|
1.0
|
CE
|
B:LYS51
|
3.3
|
79.0
|
1.0
|
F3
|
B:ALF703
|
3.6
|
73.8
|
1.0
|
HZ2
|
B:LYS51
|
3.7
|
86.9
|
1.0
|
HE3
|
B:LYS51
|
3.8
|
86.5
|
1.0
|
H
|
B:THR52
|
3.9
|
88.3
|
1.0
|
OG1
|
B:THR52
|
3.9
|
88.7
|
1.0
|
O3A
|
B:ADP701
|
4.1
|
83.7
|
1.0
|
CB
|
B:LYS51
|
4.1
|
87.8
|
1.0
|
HH22
|
B:ARG215
|
4.3
|
95.8
|
1.0
|
HG3
|
B:LYS51
|
4.3
|
86.6
|
1.0
|
H
|
B:LYS51
|
4.3
|
85.3
|
1.0
|
H
|
B:GLY48
|
4.3
|
89.9
|
1.0
|
HH22
|
C:ARG169
|
4.4
|
84.2
|
1.0
|
HG23
|
B:THR157
|
4.4
|
102.2
|
1.0
|
CD
|
B:LYS51
|
4.5
|
86.3
|
1.0
|
N
|
B:THR52
|
4.5
|
91.0
|
1.0
|
CG
|
B:LYS51
|
4.6
|
88.8
|
1.0
|
OE2
|
B:GLU127
|
4.6
|
124.3
|
1.0
|
HB3
|
B:LYS51
|
4.6
|
86.2
|
1.0
|
O2A
|
B:ADP701
|
4.7
|
105.7
|
1.0
|
HB1
|
B:ALA155
|
4.7
|
98.2
|
1.0
|
HB
|
B:THR52
|
4.7
|
85.9
|
1.0
|
CB
|
B:THR52
|
4.9
|
82.6
|
1.0
|
HH21
|
B:ARG215
|
4.9
|
95.5
|
1.0
|
HA
|
B:ARG47
|
4.9
|
100.0
|
1.0
|
PA
|
B:ADP701
|
4.9
|
105.6
|
1.0
|
NH2
|
B:ARG215
|
4.9
|
108.9
|
1.0
|
N
|
B:LYS51
|
5.0
|
75.5
|
1.0
|
HG21
|
B:THR157
|
5.0
|
101.3
|
1.0
|
HD2
|
B:LYS51
|
5.0
|
86.8
|
1.0
|
HG22
|
B:THR157
|
5.0
|
101.9
|
1.0
|
CA
|
B:LYS51
|
5.0
|
87.2
|
1.0
|
CG2
|
B:THR157
|
5.0
|
102.7
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 5 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F703
b:84.9
occ:1.00
|
F1
|
C:ALF703
|
0.0
|
84.9
|
1.0
|
AL
|
C:ALF703
|
1.8
|
82.1
|
1.0
|
MG
|
C:MG702
|
2.1
|
92.4
|
1.0
|
F4
|
C:ALF703
|
2.5
|
101.8
|
1.0
|
F3
|
C:ALF703
|
2.5
|
81.2
|
1.0
|
HH21
|
D:ARG169
|
2.7
|
94.6
|
1.0
|
HH22
|
C:ARG215
|
2.7
|
85.6
|
1.0
|
O2B
|
C:ADP701
|
2.7
|
87.3
|
1.0
|
HH22
|
D:ARG169
|
2.8
|
94.2
|
1.0
|
O1B
|
C:ADP701
|
3.0
|
101.5
|
1.0
|
NH2
|
D:ARG169
|
3.0
|
102.5
|
1.0
|
O2A
|
C:ADP701
|
3.3
|
101.5
|
1.0
|
NH2
|
C:ARG215
|
3.3
|
88.5
|
1.0
|
HH21
|
C:ARG215
|
3.4
|
85.1
|
1.0
|
PB
|
C:ADP701
|
3.4
|
66.4
|
1.0
|
F2
|
C:ALF703
|
3.6
|
83.5
|
1.0
|
OE1
|
D:GLU144
|
4.0
|
108.4
|
1.0
|
OG1
|
C:THR52
|
4.1
|
90.4
|
1.0
|
CZ
|
D:ARG169
|
4.3
|
96.4
|
1.0
|
PA
|
C:ADP701
|
4.3
|
94.8
|
1.0
|
OE2
|
D:GLU144
|
4.3
|
114.9
|
1.0
|
O3A
|
C:ADP701
|
4.4
|
71.4
|
1.0
|
OE2
|
C:GLU127
|
4.4
|
112.4
|
1.0
|
CD
|
D:GLU144
|
4.4
|
112.0
|
1.0
|
CZ
|
C:ARG215
|
4.6
|
76.2
|
1.0
|
HH12
|
C:ARG215
|
4.6
|
84.8
|
1.0
|
O3B
|
C:ADP701
|
4.6
|
78.4
|
1.0
|
HE
|
D:ARG169
|
4.8
|
93.2
|
1.0
|
HB
|
C:THR52
|
4.8
|
83.3
|
1.0
|
HH12
|
D:ARG169
|
4.9
|
93.8
|
1.0
|
O1A
|
C:ADP701
|
4.9
|
88.6
|
1.0
|
H
|
C:GLY48
|
4.9
|
89.6
|
1.0
|
HZ3
|
C:LYS51
|
5.0
|
84.9
|
1.0
|
NE
|
D:ARG169
|
5.0
|
91.9
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 6 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F703
b:83.5
occ:1.00
|
F2
|
C:ALF703
|
0.0
|
83.5
|
1.0
|
AL
|
C:ALF703
|
1.8
|
82.1
|
1.0
|
HZ3
|
C:LYS51
|
2.3
|
84.9
|
1.0
|
F3
|
C:ALF703
|
2.5
|
81.2
|
1.0
|
F4
|
C:ALF703
|
2.5
|
101.8
|
1.0
|
HA
|
C:ARG47
|
2.6
|
86.5
|
1.0
|
HZ1
|
C:LYS51
|
2.7
|
87.1
|
1.0
|
O2B
|
C:ADP701
|
2.8
|
87.3
|
1.0
|
NZ
|
C:LYS51
|
2.8
|
84.9
|
1.0
|
HZ2
|
C:LYS51
|
3.0
|
87.2
|
1.0
|
H
|
C:GLY48
|
3.3
|
89.6
|
1.0
|
PB
|
C:ADP701
|
3.5
|
66.4
|
1.0
|
O3B
|
C:ADP701
|
3.5
|
78.4
|
1.0
|
CA
|
C:ARG47
|
3.5
|
79.6
|
1.0
|
HG1
|
C:THR157
|
3.6
|
100.0
|
1.0
|
F1
|
C:ALF703
|
3.6
|
84.9
|
1.0
|
OG1
|
C:THR157
|
3.7
|
96.1
|
1.0
|
O
|
C:THR46
|
3.8
|
95.5
|
1.0
|
HB2
|
C:ARG47
|
3.9
|
85.8
|
1.0
|
N
|
C:GLY48
|
3.9
|
89.9
|
1.0
|
HH22
|
D:ARG169
|
4.0
|
94.2
|
1.0
|
HH21
|
C:ARG215
|
4.0
|
85.1
|
1.0
|
O1B
|
C:ADP701
|
4.1
|
101.5
|
1.0
|
HB3
|
C:ARG47
|
4.1
|
86.7
|
1.0
|
CB
|
C:ARG47
|
4.1
|
76.9
|
1.0
|
CE
|
C:LYS51
|
4.2
|
88.5
|
1.0
|
C
|
C:ARG47
|
4.3
|
87.8
|
1.0
|
N
|
C:ARG47
|
4.4
|
81.0
|
1.0
|
HG22
|
D:THR165
|
4.4
|
93.1
|
1.0
|
HE2
|
C:LYS51
|
4.4
|
88.2
|
1.0
|
C
|
C:THR46
|
4.4
|
89.6
|
1.0
|
HD2
|
C:LYS51
|
4.5
|
85.6
|
1.0
|
NH2
|
C:ARG215
|
4.7
|
88.5
|
1.0
|
HH22
|
C:ARG215
|
4.7
|
85.6
|
1.0
|
H
|
C:VAL49
|
4.7
|
91.7
|
1.0
|
NH2
|
D:ARG169
|
4.8
|
102.5
|
1.0
|
MG
|
C:MG702
|
4.8
|
92.4
|
1.0
|
HE3
|
C:LYS51
|
4.8
|
87.1
|
1.0
|
HG3
|
C:LYS51
|
4.9
|
86.8
|
1.0
|
HG21
|
C:THR157
|
4.9
|
100.8
|
1.0
|
CD
|
C:LYS51
|
4.9
|
81.0
|
1.0
|
HG21
|
D:THR165
|
4.9
|
92.1
|
1.0
|
O3A
|
C:ADP701
|
4.9
|
71.4
|
1.0
|
HH12
|
D:ARG169
|
5.0
|
93.8
|
1.0
|
CB
|
C:THR157
|
5.0
|
96.7
|
1.0
|
HG23
|
C:THR157
|
5.0
|
99.7
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 7 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F703
b:81.2
occ:1.00
|
F3
|
C:ALF703
|
0.0
|
81.2
|
1.0
|
HH22
|
D:ARG169
|
1.8
|
94.2
|
1.0
|
AL
|
C:ALF703
|
1.8
|
82.1
|
1.0
|
HH21
|
C:ARG215
|
2.3
|
85.1
|
1.0
|
NH2
|
D:ARG169
|
2.4
|
102.5
|
1.0
|
F2
|
C:ALF703
|
2.5
|
83.5
|
1.0
|
F1
|
C:ALF703
|
2.5
|
84.9
|
1.0
|
O2B
|
C:ADP701
|
2.7
|
87.3
|
1.0
|
NH2
|
C:ARG215
|
2.8
|
88.5
|
1.0
|
HH21
|
D:ARG169
|
2.9
|
94.6
|
1.0
|
HH22
|
C:ARG215
|
2.9
|
85.6
|
1.0
|
HH12
|
D:ARG169
|
2.9
|
93.8
|
1.0
|
CZ
|
D:ARG169
|
3.2
|
96.4
|
1.0
|
NH1
|
D:ARG169
|
3.3
|
97.1
|
1.0
|
H
|
C:GLY48
|
3.6
|
89.6
|
1.0
|
F4
|
C:ALF703
|
3.6
|
101.8
|
1.0
|
HB2
|
C:ARG47
|
3.8
|
85.8
|
1.0
|
HA
|
C:ARG47
|
3.9
|
86.5
|
1.0
|
CZ
|
C:ARG215
|
4.0
|
76.2
|
1.0
|
HE
|
C:ARG215
|
4.1
|
83.2
|
1.0
|
PB
|
C:ADP701
|
4.1
|
66.4
|
1.0
|
HH11
|
D:ARG169
|
4.1
|
93.3
|
1.0
|
HB
|
D:THR165
|
4.1
|
91.0
|
1.0
|
O2A
|
C:ADP701
|
4.2
|
101.5
|
1.0
|
HG22
|
D:THR165
|
4.3
|
93.1
|
1.0
|
NE
|
D:ARG169
|
4.3
|
91.9
|
1.0
|
N
|
C:GLY48
|
4.4
|
89.9
|
1.0
|
NE
|
C:ARG215
|
4.4
|
75.1
|
1.0
|
CB
|
C:ARG47
|
4.5
|
76.9
|
1.0
|
MG
|
C:MG702
|
4.5
|
92.4
|
1.0
|
O1B
|
C:ADP701
|
4.6
|
101.5
|
1.0
|
HB3
|
C:ARG47
|
4.6
|
86.7
|
1.0
|
HE
|
D:ARG169
|
4.6
|
93.2
|
1.0
|
CA
|
C:ARG47
|
4.6
|
79.6
|
1.0
|
HZ3
|
C:LYS51
|
4.7
|
84.9
|
1.0
|
HG21
|
D:THR165
|
4.9
|
92.1
|
1.0
|
OE2
|
C:GLU127
|
4.9
|
112.4
|
1.0
|
CG2
|
D:THR165
|
4.9
|
93.2
|
1.0
|
CB
|
D:THR165
|
4.9
|
84.9
|
1.0
|
HA
|
D:THR165
|
4.9
|
92.3
|
1.0
|
O3B
|
C:ADP701
|
4.9
|
78.4
|
1.0
|
NH1
|
C:ARG215
|
5.0
|
79.8
|
1.0
|
HG1
|
C:THR157
|
5.0
|
100.0
|
1.0
|
HH12
|
C:ARG215
|
5.0
|
84.8
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 8 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F703
b:101.8
occ:1.00
|
F4
|
C:ALF703
|
0.0
|
101.8
|
1.0
|
AL
|
C:ALF703
|
1.8
|
82.1
|
1.0
|
O1B
|
C:ADP701
|
2.1
|
101.5
|
1.0
|
F1
|
C:ALF703
|
2.5
|
84.9
|
1.0
|
F2
|
C:ALF703
|
2.5
|
83.5
|
1.0
|
PB
|
C:ADP701
|
2.6
|
66.4
|
1.0
|
MG
|
C:MG702
|
2.6
|
92.4
|
1.0
|
HZ3
|
C:LYS51
|
2.7
|
84.9
|
1.0
|
O2B
|
C:ADP701
|
2.8
|
87.3
|
1.0
|
O3B
|
C:ADP701
|
3.1
|
78.4
|
1.0
|
HB2
|
C:LYS51
|
3.3
|
86.9
|
1.0
|
HZ2
|
C:LYS51
|
3.4
|
87.2
|
1.0
|
NZ
|
C:LYS51
|
3.4
|
84.9
|
1.0
|
HD2
|
C:LYS51
|
3.5
|
85.6
|
1.0
|
F3
|
C:ALF703
|
3.6
|
81.2
|
1.0
|
OG1
|
C:THR52
|
4.0
|
90.4
|
1.0
|
H
|
C:THR52
|
4.0
|
83.7
|
1.0
|
HZ1
|
C:LYS51
|
4.0
|
87.1
|
1.0
|
O3A
|
C:ADP701
|
4.1
|
71.4
|
1.0
|
CB
|
C:LYS51
|
4.2
|
85.2
|
1.0
|
HG3
|
C:LYS51
|
4.2
|
86.8
|
1.0
|
CD
|
C:LYS51
|
4.2
|
81.0
|
1.0
|
CE
|
C:LYS51
|
4.4
|
88.5
|
1.0
|
CG
|
C:LYS51
|
4.4
|
84.2
|
1.0
|
H
|
C:LYS51
|
4.5
|
86.3
|
1.0
|
HH22
|
D:ARG169
|
4.5
|
94.2
|
1.0
|
O2A
|
C:ADP701
|
4.5
|
101.5
|
1.0
|
HH22
|
C:ARG215
|
4.6
|
85.6
|
1.0
|
HB1
|
C:ALA155
|
4.6
|
88.4
|
1.0
|
OE2
|
C:GLU127
|
4.6
|
112.4
|
1.0
|
HB3
|
C:LYS51
|
4.7
|
85.9
|
1.0
|
N
|
C:THR52
|
4.7
|
74.8
|
1.0
|
HH21
|
C:ARG215
|
4.7
|
85.1
|
1.0
|
H
|
C:GLY48
|
4.7
|
89.6
|
1.0
|
HE2
|
C:LYS51
|
4.8
|
88.2
|
1.0
|
HA
|
C:ARG47
|
4.9
|
86.5
|
1.0
|
PA
|
C:ADP701
|
4.9
|
94.8
|
1.0
|
OG1
|
C:THR157
|
4.9
|
96.1
|
1.0
|
HB
|
C:THR52
|
5.0
|
83.3
|
1.0
|
HH21
|
D:ARG169
|
5.0
|
94.6
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 9 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F703
b:92.7
occ:1.00
|
F1
|
D:ALF703
|
0.0
|
92.7
|
1.0
|
AL
|
D:ALF703
|
1.8
|
86.5
|
1.0
|
MG
|
D:MG702
|
2.0
|
80.8
|
1.0
|
F3
|
D:ALF703
|
2.5
|
99.2
|
1.0
|
F4
|
D:ALF703
|
2.5
|
94.6
|
1.0
|
O2B
|
D:ADP701
|
2.8
|
101.4
|
1.0
|
O1B
|
D:ADP701
|
2.9
|
111.0
|
1.0
|
PB
|
D:ADP701
|
3.2
|
98.0
|
1.0
|
F2
|
D:ALF703
|
3.6
|
110.8
|
1.0
|
OE2
|
D:GLU127
|
3.7
|
108.6
|
1.0
|
HH22
|
E:ARG158
|
4.0
|
100.7
|
1.0
|
O3B
|
D:ADP701
|
4.0
|
94.7
|
1.0
|
OG1
|
D:THR52
|
4.0
|
88.5
|
1.0
|
HH21
|
D:ARG215
|
4.2
|
100.0
|
1.0
|
HE2
|
D:LYS51
|
4.2
|
86.8
|
1.0
|
HZ3
|
D:LYS51
|
4.2
|
88.3
|
1.0
|
OD2
|
D:ASP126
|
4.3
|
112.3
|
1.0
|
OD1
|
D:ASP126
|
4.4
|
121.9
|
1.0
|
NH2
|
E:ARG158
|
4.4
|
103.1
|
1.0
|
HH21
|
E:ARG158
|
4.4
|
99.9
|
1.0
|
HZ1
|
D:LYS51
|
4.5
|
89.5
|
1.0
|
O2A
|
D:ADP701
|
4.5
|
114.8
|
1.0
|
NZ
|
D:LYS51
|
4.7
|
86.7
|
1.0
|
O3A
|
D:ADP701
|
4.7
|
82.1
|
1.0
|
CG
|
D:ASP126
|
4.8
|
117.0
|
1.0
|
NH2
|
D:ARG215
|
4.8
|
107.1
|
1.0
|
OE1
|
E:GLU133
|
4.8
|
121.2
|
1.0
|
CD
|
D:GLU127
|
4.8
|
113.9
|
1.0
|
HG1
|
D:THR157
|
4.9
|
109.2
|
1.0
|
CE
|
D:LYS51
|
4.9
|
77.9
|
1.0
|
HB2
|
D:LYS51
|
4.9
|
86.1
|
1.0
|
H
|
D:THR52
|
4.9
|
86.3
|
1.0
|
HH22
|
D:ARG215
|
5.0
|
99.7
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 8gj3
Go back to
Fluorine Binding Sites List in 8gj3
Fluorine binding site 10 out
of 12 in the E. Coli Clamp Loader on Primed Template Dna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F703
b:110.8
occ:1.00
|
F2
|
D:ALF703
|
0.0
|
110.8
|
1.0
|
AL
|
D:ALF703
|
1.8
|
86.5
|
1.0
|
H
|
D:GLY48
|
2.2
|
92.4
|
1.0
|
HB2
|
D:ARG47
|
2.5
|
105.6
|
1.0
|
F3
|
D:ALF703
|
2.5
|
99.2
|
1.0
|
F4
|
D:ALF703
|
2.5
|
94.6
|
1.0
|
HA
|
D:ARG47
|
2.5
|
104.6
|
1.0
|
O2B
|
D:ADP701
|
2.8
|
101.4
|
1.0
|
N
|
D:GLY48
|
2.9
|
88.1
|
1.0
|
CA
|
D:ARG47
|
3.1
|
98.9
|
1.0
|
CB
|
D:ARG47
|
3.2
|
100.9
|
1.0
|
HE
|
D:ARG215
|
3.2
|
97.6
|
1.0
|
O3B
|
D:ADP701
|
3.3
|
94.7
|
1.0
|
C
|
D:ARG47
|
3.5
|
100.0
|
1.0
|
PB
|
D:ADP701
|
3.5
|
98.0
|
1.0
|
HZ3
|
D:LYS51
|
3.5
|
88.3
|
1.0
|
HB3
|
D:ARG47
|
3.5
|
104.7
|
1.0
|
F1
|
D:ALF703
|
3.6
|
92.7
|
1.0
|
HH12
|
E:ARG158
|
3.8
|
99.8
|
1.0
|
HA2
|
D:GLY48
|
3.8
|
89.3
|
1.0
|
NE
|
D:ARG215
|
3.9
|
92.0
|
1.0
|
HH21
|
D:ARG215
|
3.9
|
100.0
|
1.0
|
CA
|
D:GLY48
|
3.9
|
82.2
|
1.0
|
HH22
|
E:ARG158
|
4.0
|
100.7
|
1.0
|
HG22
|
E:THR154
|
4.2
|
96.7
|
1.0
|
HD2
|
D:ARG215
|
4.2
|
98.2
|
1.0
|
NZ
|
D:LYS51
|
4.3
|
86.7
|
1.0
|
HZ1
|
D:LYS51
|
4.4
|
89.5
|
1.0
|
NH1
|
E:ARG158
|
4.4
|
107.6
|
1.0
|
HA3
|
D:GLY48
|
4.4
|
91.0
|
1.0
|
HG1
|
D:THR157
|
4.5
|
109.2
|
1.0
|
N
|
D:ARG47
|
4.5
|
98.1
|
1.0
|
CG
|
D:ARG47
|
4.5
|
99.4
|
1.0
|
NH2
|
D:ARG215
|
4.5
|
107.1
|
1.0
|
O1B
|
D:ADP701
|
4.6
|
111.0
|
1.0
|
NH2
|
E:ARG158
|
4.6
|
103.1
|
1.0
|
CD
|
D:ARG215
|
4.7
|
95.7
|
1.0
|
O
|
D:ARG47
|
4.7
|
109.1
|
1.0
|
CZ
|
D:ARG215
|
4.7
|
97.7
|
1.0
|
HG3
|
D:ARG47
|
4.7
|
104.5
|
1.0
|
O3A
|
D:ADP701
|
4.7
|
82.1
|
1.0
|
HG2
|
D:ARG47
|
4.7
|
104.8
|
1.0
|
HZ2
|
D:LYS51
|
4.7
|
88.9
|
1.0
|
H
|
D:VAL49
|
4.7
|
96.5
|
1.0
|
HB
|
E:THR154
|
4.8
|
96.1
|
1.0
|
HH11
|
E:ARG158
|
4.9
|
100.6
|
1.0
|
O
|
D:THR46
|
4.9
|
109.3
|
1.0
|
CZ
|
E:ARG158
|
4.9
|
98.4
|
1.0
|
CG2
|
E:THR154
|
4.9
|
95.3
|
1.0
|
OG1
|
D:THR157
|
5.0
|
116.2
|
1.0
|
HG21
|
E:THR154
|
5.0
|
96.9
|
1.0
|
H
|
D:ARG47
|
5.0
|
104.4
|
1.0
|
|
Reference:
Z.-Q.Xu,
A.J.Oakley,
N.E.Dixon.
Structural Characterisation of the Complete Cycle of Sliding Clamp Loading in E. Coli To Be Published.
Page generated: Fri Aug 2 19:48:33 2024
|