Fluorine in PDB 8gja: RAD51C-XRCC3 Structure

The structure of RAD51C-XRCC3 Structure, PDB code: 8gja was solved by A.S.Arvai, J.A.Tainer, G.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.33 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.94, 112.3, 259.5, 90, 90, 90
R / Rfree (%)	18.6 / 23.2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Fluorine atom in the RAD51C-XRCC3 Structure (pdb code 8gja). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the RAD51C-XRCC3 Structure, PDB code: 8gja:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:54.8 occ:1.00 F1 A:BEF1001 0.0 54.8 1.0 BE A:BEF1001 1.5 40.8 1.0 O2B A:ADP1000 2.3 42.8 1.0 O1B A:ADP1000 2.4 41.5 1.0 F2 A:BEF1001 2.5 45.1 1.0 F3 A:BEF1001 2.6 42.0 1.0 PB A:ADP1000 2.8 40.7 1.0 O A:HOH1103 3.4 49.2 1.0 O A:HOH1119 3.4 57.8 1.0 OE1 A:GLU153 3.6 72.9 1.0 NZ A:LYS123 3.9 48.1 1.0 O3B A:ADP1000 3.9 43.4 1.0 O3A A:ADP1000 4.0 45.0 1.0 OG1 A:THR124 4.1 46.0 1.0 CE A:LYS123 4.1 45.6 1.0 CD A:GLU153 4.4 61.2 1.0 OE2 A:GLU153 4.5 61.2 1.0 O1A A:ADP1000 4.8 42.5 1.0 PA A:ADP1000 4.9 41.5 1.0 N A:GLY120 4.9 45.9 1.0 CA A:PRO119 5.0 47.3 1.0

Fluorine binding site 2 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:45.1 occ:1.00 F2 A:BEF1001 0.0 45.1 1.0 BE A:BEF1001 1.6 40.8 1.0 OG1 A:THR124 2.3 46.0 1.0 O1B A:ADP1000 2.5 41.5 1.0 F1 A:BEF1001 2.5 54.8 1.0 F3 A:BEF1001 2.5 42.0 1.0 OD1 A:ASP234 3.0 55.5 1.0 OE1 A:GLU153 3.1 72.9 1.0 O A:HOH1103 3.3 49.2 1.0 OD2 A:ASP234 3.6 46.1 1.0 CB A:THR124 3.7 42.1 1.0 CG A:ASP234 3.7 51.1 1.0 PB A:ADP1000 3.7 40.7 1.0 N A:THR124 3.8 43.3 1.0 CD A:GLU153 4.0 61.2 1.0 CA A:THR124 4.1 38.8 1.0 OG A:SER155 4.1 64.2 1.0 CB A:LYS123 4.1 47.4 1.0 O2B A:ADP1000 4.2 42.8 1.0 CE A:LYS123 4.2 45.6 1.0 OE2 A:GLU153 4.3 61.2 1.0 O3B A:ADP1000 4.5 43.4 1.0 C A:LYS123 4.5 38.2 1.0 CG2 A:THR124 4.7 32.0 1.0 NZ A:LYS123 4.8 48.1 1.0 CA A:LYS123 4.9 40.1 1.0 O3A A:ADP1000 4.9 45.0 1.0 OG1 A:THR275 4.9 50.8 1.0 O2A A:ADP1000 5.0 41.4 1.0

Fluorine binding site 3 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:42.0 occ:1.00 F3 A:BEF1001 0.0 42.0 1.0 BE A:BEF1001 1.6 40.8 1.0 OG1 A:THR124 2.3 46.0 1.0 O1B A:ADP1000 2.4 41.5 1.0 F2 A:BEF1001 2.5 45.1 1.0 F1 A:BEF1001 2.6 54.8 1.0 OG A:SER155 3.2 64.2 1.0 CB A:THR124 3.2 42.1 1.0 O1A A:ADP1000 3.3 42.5 1.0 CB A:SER155 3.5 48.0 1.0 PB A:ADP1000 3.5 40.7 1.0 O2B A:ADP1000 3.8 42.8 1.0 OE1 A:GLU153 3.9 72.9 1.0 O A:HOH1119 3.9 57.8 1.0 PA A:ADP1000 4.0 41.5 1.0 O3A A:ADP1000 4.0 45.0 1.0 CG2 A:THR124 4.0 32.0 1.0 O2A A:ADP1000 4.3 41.4 1.0 CA A:THR124 4.4 38.8 1.0 N A:THR124 4.5 43.3 1.0 OD2 A:ASP234 4.7 46.1 1.0 CG B:PRO323 4.7 24.7 1.0 O3B A:ADP1000 4.9 43.4 1.0 CB B:PRO323 4.9 21.4 1.0

Fluorine binding site 4 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:79.4 occ:1.00 F1 B:BEF1001 0.0 79.4 1.0 BE B:BEF1001 1.5 70.2 1.0 F2 B:BEF1001 2.5 68.1 1.0 O1B B:ADP1000 2.5 69.1 1.0 F3 B:BEF1001 2.6 59.3 1.0 O2B B:ADP1000 2.9 66.3 1.0 PB B:ADP1000 3.1 66.2 1.0 O B:HOH1116 3.5 78.4 1.0 O3B B:ADP1000 3.7 55.5 1.0 OE1 B:GLN253 3.8 86.1 1.0 OG1 B:THR112 4.1 46.6 1.0 NZ B:LYS111 4.3 51.9 1.0 OE2 B:GLU141 4.5 111.9 1.0 O3A B:ADP1000 4.5 56.5 1.0 O2A B:ADP1000 4.6 61.5 1.0 CE B:LYS111 4.6 53.7 1.0 OE1 B:GLU141 4.9 108.8 1.0

Fluorine binding site 5 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:68.1 occ:1.00 F2 B:BEF1001 0.0 68.1 1.0 BE B:BEF1001 1.6 70.2 1.0 OG1 B:THR112 2.3 46.6 1.0 O1B B:ADP1000 2.3 69.1 1.0 F1 B:BEF1001 2.5 79.4 1.0 F3 B:BEF1001 2.6 59.3 1.0 OD2 B:ASP208 3.3 45.0 1.0 OD1 B:ASP208 3.4 56.7 1.0 PB B:ADP1000 3.7 66.2 1.0 CB B:THR112 3.7 54.5 1.0 CG B:ASP208 3.7 61.1 1.0 N B:THR112 4.1 48.5 1.0 O3B B:ADP1000 4.2 55.5 1.0 CE B:LYS111 4.3 53.7 1.0 CA B:THR112 4.3 48.8 1.0 O2B B:ADP1000 4.4 66.3 1.0 CG1 B:VAL251 4.4 47.6 1.0 CB B:LYS111 4.6 42.8 1.0 NZ B:LYS111 4.7 51.9 1.0 CG2 B:THR112 4.7 41.6 1.0 O3A B:ADP1000 4.8 56.5 1.0 C B:LYS111 4.9 50.7 1.0

Fluorine binding site 6 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:59.3 occ:1.00 F3 B:BEF1001 0.0 59.3 1.0 BE B:BEF1001 1.6 70.2 1.0 O1B B:ADP1000 2.4 69.1 1.0 OG1 B:THR112 2.4 46.6 1.0 F2 B:BEF1001 2.6 68.1 1.0 F1 B:BEF1001 2.6 79.4 1.0 O2A B:ADP1000 3.2 61.5 1.0 CB B:THR112 3.3 54.5 1.0 PB B:ADP1000 3.5 66.2 1.0 O2B B:ADP1000 3.6 66.3 1.0 O B:HOH1116 3.7 78.4 1.0 CG2 B:THR112 4.0 41.6 1.0 PA B:ADP1000 4.0 53.2 1.0 O3A B:ADP1000 4.2 56.5 1.0 O1A B:ADP1000 4.4 46.7 1.0 CA B:THR112 4.6 48.8 1.0 N B:THR112 4.7 48.5 1.0 O3B B:ADP1000 4.8 55.5 1.0 OD2 B:ASP208 4.8 45.0 1.0

Fluorine binding site 7 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ C:F1001 b:54.4 occ:1.00 F1 C:BEF1001 0.0 54.4 1.0 BE C:BEF1001 1.5 44.6 1.0 O3B C:ADP1000 2.3 39.0 1.0 O2B C:ADP1000 2.4 41.6 1.0 F2 C:BEF1001 2.5 38.5 1.0 F3 C:BEF1001 2.6 40.9 1.0 PB C:ADP1000 2.8 36.9 1.0 O C:HOH1103 3.2 43.4 1.0 OE1 C:GLU153 3.5 68.0 1.0 O D:HOH1117 3.8 47.4 1.0 O1B C:ADP1000 3.9 32.7 1.0 OG1 C:THR124 3.9 40.2 1.0 O3A C:ADP1000 4.0 44.7 1.0 NZ C:LYS123 4.2 42.1 1.0 CD C:GLU153 4.3 64.4 1.0 OE2 C:GLU153 4.4 62.5 1.0 CE C:LYS123 4.4 29.4 1.0 O2A C:ADP1000 4.5 36.4 1.0 O C:HOH1108 4.7 45.2 1.0 PA C:ADP1000 4.8 38.1 1.0 OG C:SER155 4.9 54.0 1.0 N C:GLY120 5.0 43.3 1.0

Fluorine binding site 8 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ C:F1001 b:38.5 occ:1.00 F2 C:BEF1001 0.0 38.5 1.0 BE C:BEF1001 1.6 44.6 1.0 OG1 C:THR124 2.3 40.2 1.0 F1 C:BEF1001 2.5 54.4 1.0 F3 C:BEF1001 2.5 40.9 1.0 OE1 C:GLU153 2.5 68.0 1.0 O3B C:ADP1000 2.8 39.0 1.0 OD1 C:ASP234 3.2 42.1 1.0 OG C:SER155 3.5 54.0 1.0 CD C:GLU153 3.5 64.4 1.0 OD2 C:ASP234 3.6 45.2 1.0 CB C:THR124 3.7 42.0 1.0 CG C:ASP234 3.8 50.8 1.0 OE2 C:GLU153 4.0 62.5 1.0 PB C:ADP1000 4.1 36.9 1.0 N C:THR124 4.3 40.2 1.0 CA C:THR124 4.4 38.6 1.0 O2B C:ADP1000 4.5 41.6 1.0 CB C:SER155 4.5 56.1 1.0 CG2 C:THR124 4.5 35.2 1.0 CG C:GLU153 4.7 49.7 1.0 O D:HOH1117 4.9 47.4 1.0 CE C:LYS123 4.9 29.4 1.0 O1B C:ADP1000 4.9 32.7 1.0 O2A C:ADP1000 5.0 36.4 1.0 CB C:GLU153 5.0 43.0 1.0

Fluorine binding site 9 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ C:F1001 b:40.9 occ:1.00 F3 C:BEF1001 0.0 40.9 1.0 BE C:BEF1001 1.6 44.6 1.0 O3B C:ADP1000 2.2 39.0 1.0 OG1 C:THR124 2.4 40.2 1.0 F2 C:BEF1001 2.5 38.5 1.0 F1 C:BEF1001 2.6 54.4 1.0 O2A C:ADP1000 2.7 36.4 1.0 O D:HOH1117 3.1 47.4 1.0 CB C:THR124 3.1 42.0 1.0 PB C:ADP1000 3.3 36.9 1.0 OG C:SER155 3.5 54.0 1.0 PA C:ADP1000 3.5 38.1 1.0 O3A C:ADP1000 3.7 44.7 1.0 O2B C:ADP1000 3.7 41.6 1.0 CB C:SER155 3.8 56.1 1.0 O C:HOH1108 3.8 45.2 1.0 O C:HOH1103 3.9 43.4 1.0 CG2 C:THR124 3.9 35.2 1.0 O1A C:ADP1000 3.9 41.4 1.0 OE1 C:GLU153 4.2 68.0 1.0 CA C:THR124 4.4 38.6 1.0 N C:THR124 4.4 40.2 1.0 O1B C:ADP1000 4.7 32.7 1.0 CB D:PRO323 4.7 30.7 1.0 O5' C:ADP1000 5.0 34.8 1.0

Fluorine binding site 10 out of 15 in the RAD51C-XRCC3 Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of RAD51C-XRCC3 Structure within 5.0Å range: probe atom residue distance (Å) B Occ D:F1001 b:87.5 occ:1.00 F1 D:BEF1001 0.0 87.5 1.0 BE D:BEF1001 1.5 79.8 1.0 O2B D:ADP1000 2.5 77.6 1.0 F2 D:BEF1001 2.5 72.8 1.0 F3 D:BEF1001 2.6 64.5 1.0 PB D:ADP1000 2.9 66.0 1.0 O3B D:ADP1000 3.1 85.9 1.0 O1B D:ADP1000 3.4 69.3 1.0 NE2 D:GLN253 3.5 85.7 1.0 O D:SER107 3.6 104.6 1.0 OE1 D:GLU141 3.8 100.7 1.0 NZ D:LYS111 4.0 58.7 1.0 CE D:LYS111 4.4 59.1 1.0 OG1 D:THR112 4.4 63.1 1.0 O3A D:ADP1000 4.5 69.8 1.0 CD D:GLU141 4.6 104.0 1.0 OE2 D:GLU141 4.7 94.3 1.0 C D:SER107 4.7 92.6 1.0 CD D:GLN253 4.8 104.5 1.0 O1A D:ADP1000 4.8 67.0 1.0

M.A.Longo, S.Roy, Y.Chen, K.H.Tomaszowski, A.S.Arvai, J.T.Pepper, R.A.Boisvert, S.Kunnimalaiyaan, C.Keshvani, D.Schild, A.Bacolla, G.J.Williams, J.A.Tainer, K.Schlacher. RAD51C-XRCC3 Structure and Cancer Patient Mutations Define Dna Replication Roles. Nat Commun V. 14 4445 2023.
ISSN: ESSN 2041-1723
PubMed: 37488098
DOI: 10.1038/S41467-023-40096-1