Fluorine in PDB 8hsj: Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
Other elements in 8hsj:
The structure of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Fluorine atom in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
(pdb code 8hsj). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the
Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3, PDB code: 8hsj:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 1 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:173.2
occ:1.00
|
F1
|
A:BEF1002
|
0.0
|
173.2
|
1.0
|
|
BE
|
A:BEF1002
|
1.5
|
173.2
|
1.0
|
|
O3B
|
A:ADP1000
|
1.7
|
178.3
|
1.0
|
|
O3A
|
A:ADP1000
|
2.0
|
178.3
|
1.0
|
|
NZ
|
A:LYS190
|
2.2
|
167.2
|
1.0
|
|
PB
|
A:ADP1000
|
2.4
|
178.3
|
1.0
|
|
N
|
A:LYS187
|
2.4
|
164.9
|
1.0
|
|
F3
|
A:BEF1002
|
2.5
|
173.2
|
1.0
|
|
F2
|
A:BEF1002
|
2.5
|
173.2
|
1.0
|
|
CA
|
A:PRO186
|
3.2
|
158.7
|
1.0
|
|
C
|
A:PRO186
|
3.2
|
158.7
|
1.0
|
|
O2B
|
A:ADP1000
|
3.3
|
178.3
|
1.0
|
|
C5'
|
A:ADP1000
|
3.4
|
178.3
|
1.0
|
|
CE
|
A:LYS190
|
3.4
|
167.2
|
1.0
|
|
PA
|
A:ADP1000
|
3.4
|
178.3
|
1.0
|
|
CA
|
A:LYS187
|
3.4
|
164.9
|
1.0
|
|
O1B
|
A:ADP1000
|
3.6
|
178.3
|
1.0
|
|
O5'
|
A:ADP1000
|
3.7
|
178.3
|
1.0
|
|
O2A
|
A:ADP1000
|
3.9
|
178.3
|
1.0
|
|
O
|
A:PRO185
|
4.0
|
163.7
|
1.0
|
|
CB
|
A:PRO186
|
4.1
|
158.7
|
1.0
|
|
N
|
A:ALA188
|
4.3
|
174.1
|
1.0
|
|
N
|
A:PRO186
|
4.3
|
158.7
|
1.0
|
|
C
|
A:LYS187
|
4.4
|
164.9
|
1.0
|
|
O
|
A:PRO186
|
4.4
|
158.7
|
1.0
|
|
O1A
|
A:ADP1000
|
4.5
|
178.3
|
1.0
|
|
CB
|
A:LYS187
|
4.5
|
164.9
|
1.0
|
|
CD
|
A:LYS190
|
4.6
|
167.2
|
1.0
|
|
C
|
A:PRO185
|
4.6
|
163.7
|
1.0
|
|
NH2
|
B:ARG373
|
4.7
|
163.8
|
1.0
|
|
C4'
|
A:ADP1000
|
4.8
|
178.3
|
1.0
|
|
Fluorine binding site 2 out
of 18 in 8hsj
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Fluorine Binding Sites List in 8hsj
Fluorine binding site 2 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:173.2
occ:1.00
|
F2
|
A:BEF1002
|
0.0
|
173.2
|
1.0
|
|
BE
|
A:BEF1002
|
1.6
|
173.2
|
1.0
|
|
F3
|
A:BEF1002
|
2.5
|
173.2
|
1.0
|
|
F1
|
A:BEF1002
|
2.5
|
173.2
|
1.0
|
|
O2B
|
A:ADP1000
|
2.7
|
178.3
|
1.0
|
|
O3B
|
A:ADP1000
|
3.0
|
178.3
|
1.0
|
|
N
|
A:LYS187
|
3.1
|
164.9
|
1.0
|
|
PB
|
A:ADP1000
|
3.1
|
178.3
|
1.0
|
|
O3A
|
A:ADP1000
|
3.1
|
178.3
|
1.0
|
|
NH2
|
A:ARG218
|
3.5
|
160.6
|
1.0
|
|
NH2
|
B:ARG373
|
3.6
|
163.8
|
1.0
|
|
CA
|
B:GLY344
|
3.7
|
172.1
|
1.0
|
|
CA
|
A:LYS187
|
3.7
|
164.9
|
1.0
|
|
CB
|
A:PRO186
|
3.8
|
158.7
|
1.0
|
|
C
|
A:PRO186
|
3.8
|
158.7
|
1.0
|
|
CA
|
A:PRO186
|
3.8
|
158.7
|
1.0
|
|
CB
|
A:LYS187
|
3.9
|
164.9
|
1.0
|
|
N
|
B:GLY344
|
4.4
|
172.1
|
1.0
|
|
C5'
|
A:ADP1000
|
4.5
|
178.3
|
1.0
|
|
CZ
|
B:ARG373
|
4.5
|
163.8
|
1.0
|
|
CZ
|
A:ARG218
|
4.5
|
160.6
|
1.0
|
|
O
|
B:LYS343
|
4.5
|
167.9
|
1.0
|
|
NH1
|
A:ARG218
|
4.5
|
160.6
|
1.0
|
|
NH1
|
B:ARG373
|
4.6
|
163.8
|
1.0
|
|
O1B
|
A:ADP1000
|
4.6
|
178.3
|
1.0
|
|
O
|
B:GLY344
|
4.6
|
172.1
|
1.0
|
|
PA
|
A:ADP1000
|
4.6
|
178.3
|
1.0
|
|
C
|
B:GLY344
|
4.7
|
172.1
|
1.0
|
|
NZ
|
A:LYS190
|
4.8
|
167.2
|
1.0
|
|
C
|
B:LYS343
|
4.8
|
167.9
|
1.0
|
|
O
|
A:PRO186
|
4.9
|
158.7
|
1.0
|
|
CG
|
A:LYS187
|
5.0
|
164.9
|
1.0
|
|
Fluorine binding site 3 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 3 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1002
b:173.2
occ:1.00
|
F3
|
A:BEF1002
|
0.0
|
173.2
|
1.0
|
|
BE
|
A:BEF1002
|
1.5
|
173.2
|
1.0
|
|
O3B
|
A:ADP1000
|
1.5
|
178.3
|
1.0
|
|
F2
|
A:BEF1002
|
2.5
|
173.2
|
1.0
|
|
F1
|
A:BEF1002
|
2.5
|
173.2
|
1.0
|
|
PB
|
A:ADP1000
|
2.6
|
178.3
|
1.0
|
|
O2B
|
A:ADP1000
|
2.9
|
178.3
|
1.0
|
|
CB
|
A:PRO186
|
3.1
|
158.7
|
1.0
|
|
CA
|
A:PRO186
|
3.2
|
158.7
|
1.0
|
|
CD2
|
A:LEU327
|
3.2
|
159.3
|
1.0
|
|
O3A
|
A:ADP1000
|
3.6
|
178.3
|
1.0
|
|
O1B
|
A:ADP1000
|
3.8
|
178.3
|
1.0
|
|
CG
|
A:PRO186
|
3.8
|
158.7
|
1.0
|
|
N
|
A:LYS187
|
3.9
|
164.9
|
1.0
|
|
CG
|
A:LEU327
|
3.9
|
159.3
|
1.0
|
|
C
|
A:PRO186
|
4.1
|
158.7
|
1.0
|
|
NZ
|
A:LYS190
|
4.2
|
167.2
|
1.0
|
|
NH2
|
A:ARG276
|
4.2
|
164.5
|
1.0
|
|
N
|
A:PRO186
|
4.2
|
158.7
|
1.0
|
|
CD1
|
A:LEU327
|
4.4
|
159.3
|
1.0
|
|
NE
|
A:ARG276
|
4.4
|
164.5
|
1.0
|
|
CA
|
B:GLY344
|
4.6
|
172.1
|
1.0
|
|
CD
|
A:PRO186
|
4.7
|
158.7
|
1.0
|
|
CE
|
A:LYS190
|
4.8
|
167.2
|
1.0
|
|
CZ
|
A:ARG276
|
4.8
|
164.5
|
1.0
|
|
Fluorine binding site 4 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 4 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:163.1
occ:1.00
|
F1
|
B:BEF1002
|
0.0
|
163.1
|
1.0
|
|
BE
|
B:BEF1002
|
1.5
|
163.1
|
1.0
|
|
MG
|
B:MG1001
|
2.3
|
146.9
|
1.0
|
|
N
|
B:ALA188
|
2.3
|
173.3
|
1.0
|
|
F3
|
B:BEF1002
|
2.5
|
163.1
|
1.0
|
|
F2
|
B:BEF1002
|
2.6
|
163.1
|
1.0
|
|
N
|
B:GLY189
|
2.6
|
162.4
|
1.0
|
|
O4'
|
B:ADP1000
|
2.9
|
169.3
|
1.0
|
|
C5'
|
B:ADP1000
|
3.0
|
169.3
|
1.0
|
|
C
|
B:LYS187
|
3.1
|
157.5
|
1.0
|
|
CA
|
B:LYS187
|
3.1
|
157.5
|
1.0
|
|
C
|
B:ALA188
|
3.3
|
173.3
|
1.0
|
|
CA
|
B:ALA188
|
3.3
|
173.3
|
1.0
|
|
N
|
B:LYS190
|
3.4
|
160.8
|
1.0
|
|
N
|
B:LYS187
|
3.4
|
157.5
|
1.0
|
|
C4'
|
B:ADP1000
|
3.5
|
169.3
|
1.0
|
|
CA
|
B:GLY189
|
3.7
|
162.4
|
1.0
|
|
NZ
|
B:LYS190
|
3.7
|
160.8
|
1.0
|
|
O2A
|
B:ADP1000
|
3.8
|
169.3
|
1.0
|
|
C
|
B:GLY189
|
4.0
|
162.4
|
1.0
|
|
CE
|
B:LYS190
|
4.2
|
160.8
|
1.0
|
|
CB
|
B:LYS190
|
4.2
|
160.8
|
1.0
|
|
O
|
B:LYS187
|
4.2
|
157.5
|
1.0
|
|
C1'
|
B:ADP1000
|
4.2
|
169.3
|
1.0
|
|
O5'
|
B:ADP1000
|
4.3
|
169.3
|
1.0
|
|
CB
|
B:ALA188
|
4.3
|
173.3
|
1.0
|
|
O
|
B:ALA188
|
4.4
|
173.3
|
1.0
|
|
CA
|
B:LYS190
|
4.4
|
160.8
|
1.0
|
|
C
|
B:PRO186
|
4.4
|
151.5
|
1.0
|
|
O
|
B:PRO185
|
4.5
|
151.6
|
1.0
|
|
CB
|
B:LYS187
|
4.5
|
157.5
|
1.0
|
|
N9
|
B:ADP1000
|
4.6
|
169.3
|
1.0
|
|
C8
|
B:ADP1000
|
4.6
|
169.3
|
1.0
|
|
CG
|
B:LYS190
|
4.7
|
160.8
|
1.0
|
|
NH2
|
C:ARG373
|
4.8
|
158.3
|
1.0
|
|
PA
|
B:ADP1000
|
4.8
|
169.3
|
1.0
|
|
C3'
|
B:ADP1000
|
4.8
|
169.3
|
1.0
|
|
Fluorine binding site 5 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 5 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:163.1
occ:1.00
|
F2
|
B:BEF1002
|
0.0
|
163.1
|
1.0
|
|
BE
|
B:BEF1002
|
1.6
|
163.1
|
1.0
|
|
NZ
|
B:LYS190
|
2.4
|
160.8
|
1.0
|
|
N
|
B:LYS187
|
2.4
|
157.5
|
1.0
|
|
F3
|
B:BEF1002
|
2.5
|
163.1
|
1.0
|
|
F1
|
B:BEF1002
|
2.6
|
163.1
|
1.0
|
|
O2A
|
B:ADP1000
|
2.7
|
169.3
|
1.0
|
|
O2B
|
B:ADP1000
|
2.9
|
169.3
|
1.0
|
|
C5'
|
B:ADP1000
|
3.1
|
169.3
|
1.0
|
|
CA
|
B:LYS187
|
3.2
|
157.5
|
1.0
|
|
MG
|
B:MG1001
|
3.3
|
146.9
|
1.0
|
|
CE
|
B:LYS190
|
3.3
|
160.8
|
1.0
|
|
C
|
B:PRO186
|
3.4
|
151.5
|
1.0
|
|
CA
|
B:PRO186
|
3.5
|
151.5
|
1.0
|
|
PA
|
B:ADP1000
|
3.7
|
169.3
|
1.0
|
|
N
|
B:ALA188
|
3.7
|
173.3
|
1.0
|
|
O5'
|
B:ADP1000
|
3.8
|
169.3
|
1.0
|
|
O3A
|
B:ADP1000
|
3.8
|
169.3
|
1.0
|
|
O
|
B:PRO185
|
3.9
|
151.6
|
1.0
|
|
C
|
B:LYS187
|
4.0
|
157.5
|
1.0
|
|
PB
|
B:ADP1000
|
4.0
|
169.3
|
1.0
|
|
NH2
|
C:ARG373
|
4.3
|
158.3
|
1.0
|
|
C4'
|
B:ADP1000
|
4.4
|
169.3
|
1.0
|
|
O
|
B:PRO186
|
4.5
|
151.5
|
1.0
|
|
CB
|
B:LYS187
|
4.5
|
157.5
|
1.0
|
|
CB
|
B:PRO186
|
4.5
|
151.5
|
1.0
|
|
N
|
B:PRO186
|
4.6
|
151.5
|
1.0
|
|
C
|
B:PRO185
|
4.6
|
151.6
|
1.0
|
|
O4'
|
B:ADP1000
|
4.6
|
169.3
|
1.0
|
|
CD
|
B:LYS190
|
4.7
|
160.8
|
1.0
|
|
CB
|
B:LYS190
|
4.8
|
160.8
|
1.0
|
|
O1B
|
B:ADP1000
|
4.9
|
169.3
|
1.0
|
|
CA
|
B:ALA188
|
5.0
|
173.3
|
1.0
|
|
Fluorine binding site 6 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 6 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:163.1
occ:1.00
|
F3
|
B:BEF1002
|
0.0
|
163.1
|
1.0
|
|
BE
|
B:BEF1002
|
1.5
|
163.1
|
1.0
|
|
O
|
B:PRO185
|
2.0
|
151.6
|
1.0
|
|
N
|
B:ALA188
|
2.2
|
173.3
|
1.0
|
|
F2
|
B:BEF1002
|
2.5
|
163.1
|
1.0
|
|
F1
|
B:BEF1002
|
2.5
|
163.1
|
1.0
|
|
N
|
B:LYS187
|
2.7
|
157.5
|
1.0
|
|
C
|
B:PRO186
|
2.9
|
151.5
|
1.0
|
|
CA
|
B:ALA188
|
3.0
|
173.3
|
1.0
|
|
CB
|
B:ALA188
|
3.0
|
173.3
|
1.0
|
|
C
|
B:LYS187
|
3.0
|
157.5
|
1.0
|
|
C
|
B:PRO185
|
3.2
|
151.6
|
1.0
|
|
CE
|
B:LYS190
|
3.2
|
160.8
|
1.0
|
|
CA
|
B:LYS187
|
3.3
|
157.5
|
1.0
|
|
CA
|
B:PRO186
|
3.4
|
151.5
|
1.0
|
|
NZ
|
B:LYS190
|
3.4
|
160.8
|
1.0
|
|
O
|
B:PRO186
|
3.5
|
151.5
|
1.0
|
|
C
|
B:ALA188
|
3.6
|
173.3
|
1.0
|
|
N
|
B:PRO186
|
3.7
|
151.5
|
1.0
|
|
N
|
B:GLY189
|
3.8
|
162.4
|
1.0
|
|
MG
|
B:MG1001
|
4.0
|
146.9
|
1.0
|
|
O
|
B:LYS187
|
4.1
|
157.5
|
1.0
|
|
CB
|
B:ALA184
|
4.3
|
155.5
|
1.0
|
|
O
|
B:ALA184
|
4.3
|
155.5
|
1.0
|
|
O
|
B:ALA188
|
4.4
|
173.3
|
1.0
|
|
C
|
B:ALA184
|
4.4
|
155.5
|
1.0
|
|
CA
|
B:PRO185
|
4.4
|
151.6
|
1.0
|
|
N
|
B:PRO185
|
4.5
|
151.6
|
1.0
|
|
CD
|
B:LYS190
|
4.5
|
160.8
|
1.0
|
|
CG
|
B:LYS190
|
4.6
|
160.8
|
1.0
|
|
CB
|
B:LYS187
|
4.7
|
157.5
|
1.0
|
|
O2A
|
B:ADP1000
|
4.7
|
169.3
|
1.0
|
|
N
|
B:LYS190
|
4.9
|
160.8
|
1.0
|
|
CB
|
B:PRO186
|
4.9
|
151.5
|
1.0
|
|
CB
|
B:LYS190
|
4.9
|
160.8
|
1.0
|
|
C5'
|
B:ADP1000
|
4.9
|
169.3
|
1.0
|
|
O2B
|
B:ADP1000
|
5.0
|
169.3
|
1.0
|
|
Fluorine binding site 7 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 7 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:161.4
occ:1.00
|
F1
|
C:BEF1002
|
0.0
|
161.4
|
1.0
|
|
BE
|
C:BEF1002
|
1.5
|
161.4
|
1.0
|
|
NZ
|
C:LYS190
|
2.3
|
160.9
|
1.0
|
|
O2A
|
C:ADP1000
|
2.5
|
175.2
|
1.0
|
|
F3
|
C:BEF1002
|
2.5
|
161.4
|
1.0
|
|
F2
|
C:BEF1002
|
2.6
|
161.4
|
1.0
|
|
O4'
|
C:ADP1000
|
2.9
|
175.2
|
1.0
|
|
N
|
C:LYS187
|
3.0
|
164.2
|
1.0
|
|
CA
|
C:LYS187
|
3.2
|
164.2
|
1.0
|
|
O5'
|
C:ADP1000
|
3.2
|
175.2
|
1.0
|
|
C4'
|
C:ADP1000
|
3.4
|
175.2
|
1.0
|
|
N
|
C:ALA188
|
3.4
|
170.9
|
1.0
|
|
C5'
|
C:ADP1000
|
3.5
|
175.2
|
1.0
|
|
PA
|
C:ADP1000
|
3.5
|
175.2
|
1.0
|
|
CE
|
C:LYS190
|
3.8
|
160.9
|
1.0
|
|
C
|
C:LYS187
|
3.8
|
164.2
|
1.0
|
|
C1'
|
C:ADP1000
|
4.1
|
175.2
|
1.0
|
|
N
|
C:LYS190
|
4.1
|
160.9
|
1.0
|
|
CB
|
C:LYS190
|
4.2
|
160.9
|
1.0
|
|
C
|
C:PRO186
|
4.2
|
156.9
|
1.0
|
|
N
|
C:GLY189
|
4.2
|
162.5
|
1.0
|
|
O3A
|
C:ADP1000
|
4.5
|
175.2
|
1.0
|
|
CB
|
C:LYS187
|
4.5
|
164.2
|
1.0
|
|
NH2
|
D:ARG373
|
4.6
|
162.8
|
1.0
|
|
CD
|
C:LYS190
|
4.6
|
160.9
|
1.0
|
|
CG
|
C:LYS190
|
4.6
|
160.9
|
1.0
|
|
CA
|
C:ALA188
|
4.7
|
170.9
|
1.0
|
|
O1A
|
C:ADP1000
|
4.7
|
175.2
|
1.0
|
|
CA
|
C:PRO186
|
4.7
|
156.9
|
1.0
|
|
CA
|
C:LYS190
|
4.7
|
160.9
|
1.0
|
|
O
|
C:PRO185
|
4.8
|
155.3
|
1.0
|
|
N9
|
C:ADP1000
|
4.8
|
175.2
|
1.0
|
|
C
|
C:ALA188
|
4.8
|
170.9
|
1.0
|
|
C3'
|
C:ADP1000
|
4.8
|
175.2
|
1.0
|
|
C8
|
C:ADP1000
|
4.8
|
175.2
|
1.0
|
|
O
|
C:LYS187
|
5.0
|
164.2
|
1.0
|
|
N
|
C:THR191
|
5.0
|
162.2
|
1.0
|
|
Fluorine binding site 8 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 8 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:161.4
occ:1.00
|
F2
|
C:BEF1002
|
0.0
|
161.4
|
1.0
|
|
BE
|
C:BEF1002
|
1.6
|
161.4
|
1.0
|
|
N
|
C:LYS187
|
2.3
|
164.2
|
1.0
|
|
F3
|
C:BEF1002
|
2.5
|
161.4
|
1.0
|
|
F1
|
C:BEF1002
|
2.6
|
161.4
|
1.0
|
|
NH2
|
D:ARG373
|
2.7
|
162.8
|
1.0
|
|
CA
|
C:LYS187
|
2.8
|
164.2
|
1.0
|
|
C
|
C:PRO186
|
3.3
|
156.9
|
1.0
|
|
CB
|
C:LYS187
|
3.3
|
164.2
|
1.0
|
|
CA
|
C:PRO186
|
3.7
|
156.9
|
1.0
|
|
O5'
|
C:ADP1000
|
3.7
|
175.2
|
1.0
|
|
O2A
|
C:ADP1000
|
3.8
|
175.2
|
1.0
|
|
NH2
|
C:ARG218
|
4.0
|
157.6
|
1.0
|
|
NZ
|
C:LYS190
|
4.0
|
160.9
|
1.0
|
|
CZ
|
D:ARG373
|
4.0
|
162.8
|
1.0
|
|
CB
|
C:PRO186
|
4.1
|
156.9
|
1.0
|
|
C
|
C:LYS187
|
4.2
|
164.2
|
1.0
|
|
CG
|
C:LYS187
|
4.2
|
164.2
|
1.0
|
|
C4'
|
C:ADP1000
|
4.2
|
175.2
|
1.0
|
|
PA
|
C:ADP1000
|
4.2
|
175.2
|
1.0
|
|
O3A
|
C:ADP1000
|
4.3
|
175.2
|
1.0
|
|
O
|
C:PRO186
|
4.4
|
156.9
|
1.0
|
|
O4'
|
C:ADP1000
|
4.4
|
175.2
|
1.0
|
|
NE
|
D:ARG373
|
4.5
|
162.8
|
1.0
|
|
C5'
|
C:ADP1000
|
4.6
|
175.2
|
1.0
|
|
N
|
C:ALA188
|
4.6
|
170.9
|
1.0
|
|
NH1
|
C:ARG218
|
4.8
|
157.6
|
1.0
|
|
O2B
|
C:ADP1000
|
4.8
|
175.2
|
1.0
|
|
CZ
|
C:ARG218
|
4.8
|
157.6
|
1.0
|
|
NH1
|
D:ARG373
|
5.0
|
162.8
|
1.0
|
|
Fluorine binding site 9 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 9 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:161.4
occ:1.00
|
F3
|
C:BEF1002
|
0.0
|
161.4
|
1.0
|
|
BE
|
C:BEF1002
|
1.5
|
161.4
|
1.0
|
|
O2A
|
C:ADP1000
|
2.1
|
175.2
|
1.0
|
|
NZ
|
C:LYS190
|
2.3
|
160.9
|
1.0
|
|
F2
|
C:BEF1002
|
2.5
|
161.4
|
1.0
|
|
F1
|
C:BEF1002
|
2.5
|
161.4
|
1.0
|
|
PA
|
C:ADP1000
|
3.0
|
175.2
|
1.0
|
|
O3A
|
C:ADP1000
|
3.0
|
175.2
|
1.0
|
|
O2B
|
C:ADP1000
|
3.1
|
175.2
|
1.0
|
|
CE
|
C:LYS190
|
3.3
|
160.9
|
1.0
|
|
N
|
C:LYS187
|
3.4
|
164.2
|
1.0
|
|
PB
|
C:ADP1000
|
3.4
|
175.2
|
1.0
|
|
O3B
|
C:ADP1000
|
3.4
|
175.2
|
1.0
|
|
O5'
|
C:ADP1000
|
3.5
|
175.2
|
1.0
|
|
CA
|
C:PRO186
|
3.7
|
156.9
|
1.0
|
|
C
|
C:PRO186
|
4.1
|
156.9
|
1.0
|
|
CD
|
C:LYS190
|
4.4
|
160.9
|
1.0
|
|
CA
|
C:LYS187
|
4.4
|
164.2
|
1.0
|
|
O1A
|
C:ADP1000
|
4.4
|
175.2
|
1.0
|
|
CB
|
C:PRO186
|
4.4
|
156.9
|
1.0
|
|
C5'
|
C:ADP1000
|
4.5
|
175.2
|
1.0
|
|
CD1
|
C:LEU327
|
4.6
|
155.1
|
1.0
|
|
O
|
C:PRO185
|
4.6
|
155.3
|
1.0
|
|
N
|
C:PRO186
|
4.8
|
156.9
|
1.0
|
|
CD2
|
C:LEU327
|
4.8
|
155.1
|
1.0
|
|
CG
|
C:LEU327
|
4.9
|
155.1
|
1.0
|
|
O1B
|
C:ADP1000
|
4.9
|
175.2
|
1.0
|
|
C4'
|
C:ADP1000
|
5.0
|
175.2
|
1.0
|
|
Fluorine binding site 10 out
of 18 in 8hsj
Go back to
Fluorine Binding Sites List in 8hsj
Fluorine binding site 10 out
of 18 in the Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Thermus Thermophilus Transcription Termination Factor Rho Bound with Adp-BEF3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1002
b:165.7
occ:1.00
|
F1
|
D:BEF1002
|
0.0
|
165.7
|
1.0
|
|
BE
|
D:BEF1002
|
1.5
|
165.7
|
1.0
|
|
N
|
D:LYS187
|
2.1
|
159.6
|
1.0
|
|
F3
|
D:BEF1002
|
2.5
|
165.7
|
1.0
|
|
F2
|
D:BEF1002
|
2.5
|
165.7
|
1.0
|
|
C
|
D:PRO186
|
2.8
|
157.7
|
1.0
|
|
CA
|
D:PRO186
|
2.9
|
157.7
|
1.0
|
|
CA
|
D:LYS187
|
3.0
|
159.6
|
1.0
|
|
NH2
|
E:ARG373
|
3.1
|
155.3
|
1.0
|
|
CB
|
D:PRO186
|
3.2
|
157.7
|
1.0
|
|
CB
|
D:LYS187
|
3.4
|
159.6
|
1.0
|
|
C5'
|
D:ADP1000
|
3.8
|
169.0
|
1.0
|
|
O
|
D:PRO186
|
3.9
|
157.7
|
1.0
|
|
NZ
|
D:LYS190
|
4.1
|
164.5
|
1.0
|
|
O3A
|
D:ADP1000
|
4.3
|
169.0
|
1.0
|
|
N
|
D:PRO186
|
4.4
|
157.7
|
1.0
|
|
C
|
D:LYS187
|
4.4
|
159.6
|
1.0
|
|
CZ
|
E:ARG373
|
4.4
|
155.3
|
1.0
|
|
CG
|
D:LYS187
|
4.5
|
159.6
|
1.0
|
|
CG
|
D:PRO186
|
4.5
|
157.7
|
1.0
|
|
O5'
|
D:ADP1000
|
4.6
|
169.0
|
1.0
|
|
NH2
|
D:ARG218
|
4.8
|
160.0
|
1.0
|
|
N
|
D:ALA188
|
4.8
|
173.7
|
1.0
|
|
O
|
D:PRO185
|
4.8
|
160.2
|
1.0
|
|
CA
|
E:GLY344
|
4.9
|
174.0
|
1.0
|
|
C4'
|
D:ADP1000
|
4.9
|
169.0
|
1.0
|
|
O1B
|
D:ADP1000
|
4.9
|
169.0
|
1.0
|
|
Reference:
Y.Murayama,
H.Ehara,
M.Aoki,
M.Goto,
T.Yokoyama,
S.I.Sekine.
Structural Basis of the Transcription Termination Factor Rho Engagement with Transcribing Rna Polymerase From Thermus Thermophilus. Sci Adv V. 9 E7093 2023.
ISSN: ESSN 2375-2548
PubMed: 36753546
DOI: 10.1126/SCIADV.ADE7093
Page generated: Thu Jul 27 14:33:37 2023
|
