Fluorine in PDB 8iws: HSPCA1 in the CAE2P State
Enzymatic activity of HSPCA1 in the CAE2P State
All present enzymatic activity of HSPCA1 in the CAE2P State:
7.2.2.10;
Other elements in 8iws:
The structure of HSPCA1 in the CAE2P State also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the HSPCA1 in the CAE2P State
(pdb code 8iws). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
HSPCA1 in the CAE2P State, PDB code: 8iws:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 8iws
Go back to
Fluorine Binding Sites List in 8iws
Fluorine binding site 1 out
of 3 in the HSPCA1 in the CAE2P State
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of HSPCA1 in the CAE2P State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1003
b:3.7
occ:1.00
|
F1
|
A:BEF1003
|
0.0
|
3.7
|
1.0
|
BE
|
A:BEF1003
|
1.5
|
3.7
|
1.0
|
MG
|
A:MG1001
|
1.8
|
3.0
|
1.0
|
OD2
|
A:ASP350
|
2.2
|
21.9
|
1.0
|
F3
|
A:BEF1003
|
2.5
|
3.7
|
1.0
|
F2
|
A:BEF1003
|
2.6
|
3.7
|
1.0
|
O
|
A:THR352
|
2.7
|
13.6
|
1.0
|
CG
|
A:ASP350
|
3.1
|
26.8
|
1.0
|
OD1
|
A:ASP350
|
3.4
|
36.9
|
1.0
|
OD1
|
A:ASP644
|
3.5
|
28.6
|
1.0
|
CB
|
A:THR352
|
3.6
|
4.4
|
1.0
|
C
|
A:THR352
|
3.7
|
5.5
|
1.0
|
O
|
A:SER186
|
4.0
|
20.7
|
1.0
|
CA
|
A:THR352
|
4.0
|
1.6
|
1.0
|
N
|
A:THR352
|
4.3
|
4.5
|
1.0
|
CA
|
A:GLY190
|
4.3
|
23.2
|
1.0
|
OG1
|
A:THR352
|
4.3
|
20.4
|
1.0
|
CB
|
A:ASP350
|
4.4
|
14.3
|
1.0
|
OD2
|
A:ASP648
|
4.5
|
30.6
|
1.0
|
CG2
|
A:THR352
|
4.5
|
1.7
|
1.0
|
CG
|
A:ASP644
|
4.7
|
32.5
|
1.0
|
N
|
A:GLY353
|
4.8
|
4.5
|
1.0
|
N
|
A:GLY190
|
5.0
|
24.8
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 8iws
Go back to
Fluorine Binding Sites List in 8iws
Fluorine binding site 2 out
of 3 in the HSPCA1 in the CAE2P State
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of HSPCA1 in the CAE2P State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1003
b:3.7
occ:1.00
|
F2
|
A:BEF1003
|
0.0
|
3.7
|
1.0
|
BE
|
A:BEF1003
|
1.6
|
3.7
|
1.0
|
F3
|
A:BEF1003
|
2.5
|
3.7
|
1.0
|
F1
|
A:BEF1003
|
2.6
|
3.7
|
1.0
|
O
|
A:THR570
|
2.8
|
17.5
|
1.0
|
OD1
|
A:ASP350
|
2.8
|
36.9
|
1.0
|
OG1
|
A:THR352
|
2.8
|
20.4
|
1.0
|
CB
|
A:THR352
|
3.0
|
4.4
|
1.0
|
CG
|
A:ASP350
|
3.2
|
26.8
|
1.0
|
OD2
|
A:ASP350
|
3.2
|
21.9
|
1.0
|
N
|
A:THR352
|
3.3
|
4.5
|
1.0
|
CA
|
A:THR352
|
3.6
|
1.6
|
1.0
|
C
|
A:THR570
|
3.9
|
18.7
|
1.0
|
CA
|
A:GLY190
|
4.0
|
23.2
|
1.0
|
O
|
A:THR352
|
4.0
|
13.6
|
1.0
|
MG
|
A:MG1001
|
4.1
|
3.0
|
1.0
|
C
|
A:THR352
|
4.2
|
5.5
|
1.0
|
N
|
A:LYS351
|
4.2
|
1.6
|
1.0
|
O
|
A:GLY190
|
4.3
|
24.7
|
1.0
|
CG2
|
A:THR352
|
4.4
|
1.7
|
1.0
|
C
|
A:LYS351
|
4.4
|
11.1
|
1.0
|
CB
|
A:ASP350
|
4.4
|
14.3
|
1.0
|
C
|
A:ASP350
|
4.5
|
11.6
|
1.0
|
CA
|
A:THR570
|
4.6
|
20.5
|
1.0
|
C
|
A:GLY190
|
4.7
|
23.9
|
1.0
|
O
|
A:ILE569
|
4.7
|
31.2
|
1.0
|
CA
|
A:ASP350
|
4.8
|
10.7
|
1.0
|
CA
|
A:LYS351
|
4.8
|
8.3
|
1.0
|
CB
|
A:LYS351
|
4.9
|
7.6
|
1.0
|
N
|
A:GLY571
|
4.9
|
25.8
|
1.0
|
O
|
A:ASP350
|
5.0
|
24.9
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 8iws
Go back to
Fluorine Binding Sites List in 8iws
Fluorine binding site 3 out
of 3 in the HSPCA1 in the CAE2P State
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of HSPCA1 in the CAE2P State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1003
b:3.7
occ:1.00
|
F3
|
A:BEF1003
|
0.0
|
3.7
|
1.0
|
BE
|
A:BEF1003
|
1.5
|
3.7
|
1.0
|
F2
|
A:BEF1003
|
2.5
|
3.7
|
1.0
|
OD1
|
A:ASP350
|
2.5
|
36.9
|
1.0
|
F1
|
A:BEF1003
|
2.5
|
3.7
|
1.0
|
OD2
|
A:ASP350
|
3.0
|
21.9
|
1.0
|
CG
|
A:ASP350
|
3.1
|
26.8
|
1.0
|
NZ
|
A:LYS625
|
3.2
|
26.3
|
1.0
|
ND2
|
A:ASN647
|
3.4
|
23.8
|
1.0
|
OD1
|
A:ASP648
|
3.6
|
38.1
|
1.0
|
O
|
A:THR570
|
3.8
|
17.5
|
1.0
|
CB
|
A:ASN647
|
3.9
|
23.6
|
1.0
|
OD2
|
A:ASP648
|
4.1
|
30.6
|
1.0
|
MG
|
A:MG1001
|
4.1
|
3.0
|
1.0
|
CG
|
A:ASN647
|
4.1
|
26.0
|
1.0
|
CG
|
A:ASP648
|
4.2
|
32.1
|
1.0
|
CA
|
A:GLY190
|
4.2
|
23.2
|
1.0
|
CE
|
A:LYS625
|
4.5
|
20.3
|
1.0
|
CB
|
A:ASP350
|
4.6
|
14.3
|
1.0
|
N
|
A:GLY190
|
4.8
|
24.8
|
1.0
|
C
|
A:THR570
|
4.8
|
18.7
|
1.0
|
O
|
A:THR189
|
5.0
|
29.1
|
1.0
|
|
Reference:
M.Wu,
C.Wu,
T.Song,
K.Pan,
Y.Wang,
Z.Liu.
Structure and Transport Mechanism of the Human Calcium Pump SPCA1. Cell Res. V. 33 533 2023.
ISSN: ISSN 1001-0602
PubMed: 37258749
DOI: 10.1038/S41422-023-00827-X
Page generated: Fri Aug 2 20:50:45 2024
|