Fluorine in PDB 8iws: HSPCA1 in the CAE2P State

Enzymatic activity of HSPCA1 in the CAE2P State

All present enzymatic activity of HSPCA1 in the CAE2P State:
7.2.2.10;

Other elements in 8iws:

The structure of HSPCA1 in the CAE2P State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Calcium (Ca) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the HSPCA1 in the CAE2P State (pdb code 8iws). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the HSPCA1 in the CAE2P State, PDB code: 8iws:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8iws

Go back to Fluorine Binding Sites List in 8iws
Fluorine binding site 1 out of 3 in the HSPCA1 in the CAE2P State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of HSPCA1 in the CAE2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1003

b:3.7
occ:1.00
F1 A:BEF1003 0.0 3.7 1.0
BE A:BEF1003 1.5 3.7 1.0
MG A:MG1001 1.8 3.0 1.0
OD2 A:ASP350 2.2 21.9 1.0
F3 A:BEF1003 2.5 3.7 1.0
F2 A:BEF1003 2.6 3.7 1.0
O A:THR352 2.7 13.6 1.0
CG A:ASP350 3.1 26.8 1.0
OD1 A:ASP350 3.4 36.9 1.0
OD1 A:ASP644 3.5 28.6 1.0
CB A:THR352 3.6 4.4 1.0
C A:THR352 3.7 5.5 1.0
O A:SER186 4.0 20.7 1.0
CA A:THR352 4.0 1.6 1.0
N A:THR352 4.3 4.5 1.0
CA A:GLY190 4.3 23.2 1.0
OG1 A:THR352 4.3 20.4 1.0
CB A:ASP350 4.4 14.3 1.0
OD2 A:ASP648 4.5 30.6 1.0
CG2 A:THR352 4.5 1.7 1.0
CG A:ASP644 4.7 32.5 1.0
N A:GLY353 4.8 4.5 1.0
N A:GLY190 5.0 24.8 1.0

Fluorine binding site 2 out of 3 in 8iws

Go back to Fluorine Binding Sites List in 8iws
Fluorine binding site 2 out of 3 in the HSPCA1 in the CAE2P State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of HSPCA1 in the CAE2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1003

b:3.7
occ:1.00
F2 A:BEF1003 0.0 3.7 1.0
BE A:BEF1003 1.6 3.7 1.0
F3 A:BEF1003 2.5 3.7 1.0
F1 A:BEF1003 2.6 3.7 1.0
O A:THR570 2.8 17.5 1.0
OD1 A:ASP350 2.8 36.9 1.0
OG1 A:THR352 2.8 20.4 1.0
CB A:THR352 3.0 4.4 1.0
CG A:ASP350 3.2 26.8 1.0
OD2 A:ASP350 3.2 21.9 1.0
N A:THR352 3.3 4.5 1.0
CA A:THR352 3.6 1.6 1.0
C A:THR570 3.9 18.7 1.0
CA A:GLY190 4.0 23.2 1.0
O A:THR352 4.0 13.6 1.0
MG A:MG1001 4.1 3.0 1.0
C A:THR352 4.2 5.5 1.0
N A:LYS351 4.2 1.6 1.0
O A:GLY190 4.3 24.7 1.0
CG2 A:THR352 4.4 1.7 1.0
C A:LYS351 4.4 11.1 1.0
CB A:ASP350 4.4 14.3 1.0
C A:ASP350 4.5 11.6 1.0
CA A:THR570 4.6 20.5 1.0
C A:GLY190 4.7 23.9 1.0
O A:ILE569 4.7 31.2 1.0
CA A:ASP350 4.8 10.7 1.0
CA A:LYS351 4.8 8.3 1.0
CB A:LYS351 4.9 7.6 1.0
N A:GLY571 4.9 25.8 1.0
O A:ASP350 5.0 24.9 1.0

Fluorine binding site 3 out of 3 in 8iws

Go back to Fluorine Binding Sites List in 8iws
Fluorine binding site 3 out of 3 in the HSPCA1 in the CAE2P State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of HSPCA1 in the CAE2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1003

b:3.7
occ:1.00
F3 A:BEF1003 0.0 3.7 1.0
BE A:BEF1003 1.5 3.7 1.0
F2 A:BEF1003 2.5 3.7 1.0
OD1 A:ASP350 2.5 36.9 1.0
F1 A:BEF1003 2.5 3.7 1.0
OD2 A:ASP350 3.0 21.9 1.0
CG A:ASP350 3.1 26.8 1.0
NZ A:LYS625 3.2 26.3 1.0
ND2 A:ASN647 3.4 23.8 1.0
OD1 A:ASP648 3.6 38.1 1.0
O A:THR570 3.8 17.5 1.0
CB A:ASN647 3.9 23.6 1.0
OD2 A:ASP648 4.1 30.6 1.0
MG A:MG1001 4.1 3.0 1.0
CG A:ASN647 4.1 26.0 1.0
CG A:ASP648 4.2 32.1 1.0
CA A:GLY190 4.2 23.2 1.0
CE A:LYS625 4.5 20.3 1.0
CB A:ASP350 4.6 14.3 1.0
N A:GLY190 4.8 24.8 1.0
C A:THR570 4.8 18.7 1.0
O A:THR189 5.0 29.1 1.0

Reference:

M.Wu, C.Wu, T.Song, K.Pan, Y.Wang, Z.Liu. Structure and Transport Mechanism of the Human Calcium Pump SPCA1. Cell Res. V. 33 533 2023.
ISSN: ISSN 1001-0602
PubMed: 37258749
DOI: 10.1038/S41422-023-00827-X
Page generated: Fri Aug 2 20:50:45 2024

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