Fluorine in PDB 8jr0: Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
All present enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587:
7.1.2.2;
Other elements in 8jr0:
The structure of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
(pdb code 8jr0). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 7 binding sites of Fluorine where determined in the
Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587, PDB code: 8jr0:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Fluorine binding site 1 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 1 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:F600
b:72.4
occ:1.00
|
F26
|
1:UTI600
|
0.0
|
72.4
|
1.0
|
C19
|
1:UTI600
|
1.4
|
72.4
|
1.0
|
C20
|
1:UTI600
|
2.4
|
72.4
|
1.0
|
C18
|
1:UTI600
|
2.4
|
72.4
|
1.0
|
C25
|
1:UTI600
|
2.6
|
72.4
|
1.0
|
O24
|
1:UTI600
|
2.7
|
72.4
|
1.0
|
CG
|
a:PRO170
|
2.7
|
113.5
|
1.0
|
C17
|
1:UTI600
|
2.8
|
72.4
|
1.0
|
CB
|
a:PRO170
|
3.2
|
113.5
|
1.0
|
C27
|
1:UTI600
|
3.3
|
72.4
|
1.0
|
C21
|
1:UTI600
|
3.6
|
72.4
|
1.0
|
C23
|
1:UTI600
|
3.6
|
72.4
|
1.0
|
CD
|
a:PRO170
|
3.7
|
113.5
|
1.0
|
C36
|
1:UTI600
|
3.9
|
72.4
|
1.0
|
C28
|
1:UTI600
|
4.0
|
72.4
|
1.0
|
C22
|
1:UTI600
|
4.1
|
72.4
|
1.0
|
O38
|
1:UTI600
|
4.2
|
72.4
|
1.0
|
C06
|
1:UTI600
|
4.3
|
72.4
|
1.0
|
CA
|
a:PRO170
|
4.6
|
113.5
|
1.0
|
N
|
a:PRO170
|
4.7
|
113.5
|
1.0
|
C07
|
1:UTI600
|
4.8
|
72.4
|
1.0
|
C35
|
1:UTI600
|
4.9
|
72.4
|
1.0
|
N29
|
1:UTI600
|
4.9
|
72.4
|
1.0
|
CD1
|
a:ILE171
|
5.0
|
110.8
|
1.0
|
|
Fluorine binding site 2 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 2 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
4:F600
b:66.2
occ:1.00
|
F26
|
4:UTI600
|
0.0
|
66.2
|
1.0
|
C19
|
4:UTI600
|
1.4
|
66.2
|
1.0
|
C18
|
4:UTI600
|
2.4
|
66.2
|
1.0
|
C20
|
4:UTI600
|
2.4
|
66.2
|
1.0
|
O24
|
4:UTI600
|
2.8
|
66.2
|
1.0
|
C17
|
4:UTI600
|
2.8
|
66.2
|
1.0
|
C25
|
4:UTI600
|
3.2
|
66.2
|
1.0
|
C08
|
4:UTI600
|
3.6
|
66.2
|
1.0
|
C23
|
4:UTI600
|
3.6
|
66.2
|
1.0
|
C21
|
4:UTI600
|
3.6
|
66.2
|
1.0
|
C27
|
4:UTI600
|
3.8
|
66.2
|
1.0
|
O38
|
4:UTI600
|
3.9
|
66.2
|
1.0
|
C07
|
4:UTI600
|
3.9
|
66.2
|
1.0
|
C06
|
4:UTI600
|
4.0
|
66.2
|
1.0
|
C22
|
4:UTI600
|
4.1
|
66.2
|
1.0
|
C28
|
4:UTI600
|
4.2
|
66.2
|
1.0
|
C09
|
4:UTI600
|
4.3
|
66.2
|
1.0
|
O15
|
4:UTI600
|
4.7
|
66.2
|
1.0
|
C05
|
4:UTI600
|
4.8
|
66.2
|
1.0
|
C36
|
4:UTI600
|
4.8
|
66.2
|
1.0
|
C12
|
4:UTI600
|
4.8
|
66.2
|
1.0
|
|
Fluorine binding site 3 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 3 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
5:F600
b:63.1
occ:1.00
|
F26
|
5:UTI600
|
0.0
|
63.1
|
1.0
|
C19
|
5:UTI600
|
1.4
|
63.1
|
1.0
|
C20
|
5:UTI600
|
2.4
|
63.1
|
1.0
|
C18
|
5:UTI600
|
2.4
|
63.1
|
1.0
|
O24
|
5:UTI600
|
2.8
|
63.1
|
1.0
|
C17
|
5:UTI600
|
2.8
|
63.1
|
1.0
|
C25
|
5:UTI600
|
3.2
|
63.1
|
1.0
|
C23
|
5:UTI600
|
3.6
|
63.1
|
1.0
|
C21
|
5:UTI600
|
3.6
|
63.1
|
1.0
|
C08
|
5:UTI600
|
3.7
|
63.1
|
1.0
|
C27
|
5:UTI600
|
3.8
|
63.1
|
1.0
|
O38
|
5:UTI600
|
3.8
|
63.1
|
1.0
|
C07
|
5:UTI600
|
4.0
|
63.1
|
1.0
|
C06
|
5:UTI600
|
4.0
|
63.1
|
1.0
|
C22
|
5:UTI600
|
4.1
|
63.1
|
1.0
|
C28
|
5:UTI600
|
4.2
|
63.1
|
1.0
|
C09
|
5:UTI600
|
4.5
|
63.1
|
1.0
|
C05
|
5:UTI600
|
4.7
|
63.1
|
1.0
|
C36
|
5:UTI600
|
4.8
|
63.1
|
1.0
|
O15
|
5:UTI600
|
4.9
|
63.1
|
1.0
|
C12
|
5:UTI600
|
4.9
|
63.1
|
1.0
|
|
Fluorine binding site 4 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 4 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
6:F600
b:68.7
occ:1.00
|
F26
|
6:UTI600
|
0.0
|
68.7
|
1.0
|
C19
|
6:UTI600
|
1.4
|
68.7
|
1.0
|
C20
|
6:UTI600
|
2.4
|
68.7
|
1.0
|
C18
|
6:UTI600
|
2.4
|
68.7
|
1.0
|
O24
|
6:UTI600
|
2.8
|
68.7
|
1.0
|
C17
|
6:UTI600
|
2.8
|
68.7
|
1.0
|
C08
|
6:UTI600
|
3.6
|
68.7
|
1.0
|
C25
|
6:UTI600
|
3.6
|
68.7
|
1.0
|
C23
|
6:UTI600
|
3.6
|
68.7
|
1.0
|
C21
|
6:UTI600
|
3.6
|
68.7
|
1.0
|
C27
|
6:UTI600
|
3.7
|
68.7
|
1.0
|
O38
|
6:UTI600
|
3.8
|
68.7
|
1.0
|
C07
|
6:UTI600
|
4.0
|
68.7
|
1.0
|
C06
|
6:UTI600
|
4.0
|
68.7
|
1.0
|
C22
|
6:UTI600
|
4.1
|
68.7
|
1.0
|
C28
|
6:UTI600
|
4.2
|
68.7
|
1.0
|
C09
|
6:UTI600
|
4.4
|
68.7
|
1.0
|
O15
|
6:UTI600
|
4.7
|
68.7
|
1.0
|
C36
|
6:UTI600
|
4.7
|
68.7
|
1.0
|
C12
|
6:UTI600
|
5.0
|
68.7
|
1.0
|
O40
|
6:UTI600
|
5.0
|
68.7
|
1.0
|
C39
|
6:UTI600
|
5.0
|
68.7
|
1.0
|
C05
|
6:UTI600
|
5.0
|
68.7
|
1.0
|
|
Fluorine binding site 5 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 5 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:F600
b:72.8
occ:1.00
|
F26
|
7:UTI600
|
0.0
|
72.8
|
1.0
|
C19
|
7:UTI600
|
1.4
|
72.8
|
1.0
|
C18
|
7:UTI600
|
2.4
|
72.8
|
1.0
|
C20
|
7:UTI600
|
2.4
|
72.8
|
1.0
|
O24
|
7:UTI600
|
2.8
|
72.8
|
1.0
|
C17
|
7:UTI600
|
2.8
|
72.8
|
1.0
|
C27
|
7:UTI600
|
3.6
|
72.8
|
1.0
|
C23
|
7:UTI600
|
3.6
|
72.8
|
1.0
|
C21
|
7:UTI600
|
3.6
|
72.8
|
1.0
|
C25
|
7:UTI600
|
3.8
|
72.8
|
1.0
|
O38
|
7:UTI600
|
3.9
|
72.8
|
1.0
|
C28
|
7:UTI600
|
4.0
|
72.8
|
1.0
|
C22
|
7:UTI600
|
4.1
|
72.8
|
1.0
|
C06
|
7:UTI600
|
4.2
|
72.8
|
1.0
|
C08
|
7:UTI600
|
4.2
|
72.8
|
1.0
|
C07
|
7:UTI600
|
4.4
|
72.8
|
1.0
|
C36
|
7:UTI600
|
4.5
|
72.8
|
1.0
|
C39
|
7:UTI600
|
4.8
|
72.8
|
1.0
|
C05
|
7:UTI600
|
5.0
|
72.8
|
1.0
|
|
Fluorine binding site 6 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 6 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
8:F600
b:66.4
occ:1.00
|
F26
|
8:UTI600
|
0.0
|
66.4
|
1.0
|
C19
|
8:UTI600
|
1.4
|
66.4
|
1.0
|
C20
|
8:UTI600
|
2.4
|
66.4
|
1.0
|
C18
|
8:UTI600
|
2.4
|
66.4
|
1.0
|
O24
|
8:UTI600
|
2.8
|
66.4
|
1.0
|
C17
|
8:UTI600
|
2.8
|
66.4
|
1.0
|
C27
|
8:UTI600
|
2.9
|
66.4
|
1.0
|
C28
|
8:UTI600
|
3.4
|
66.4
|
1.0
|
C25
|
8:UTI600
|
3.4
|
66.4
|
1.0
|
C36
|
8:UTI600
|
3.4
|
66.4
|
1.0
|
C23
|
8:UTI600
|
3.6
|
66.4
|
1.0
|
C21
|
8:UTI600
|
3.6
|
66.4
|
1.0
|
O38
|
8:UTI600
|
3.7
|
66.4
|
1.0
|
C22
|
8:UTI600
|
4.1
|
66.4
|
1.0
|
N29
|
8:UTI600
|
4.1
|
66.4
|
1.0
|
C35
|
8:UTI600
|
4.2
|
66.4
|
1.0
|
C06
|
8:UTI600
|
4.4
|
66.4
|
1.0
|
C30
|
8:UTI600
|
4.5
|
66.4
|
1.0
|
C39
|
8:UTI600
|
4.7
|
66.4
|
1.0
|
|
Fluorine binding site 7 out
of 7 in 8jr0
Go back to
Fluorine Binding Sites List in 8jr0
Fluorine binding site 7 out
of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Tbaj-587 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
9:F600
b:72.8
occ:1.00
|
F26
|
9:UTI600
|
0.0
|
72.8
|
1.0
|
C19
|
9:UTI600
|
1.4
|
72.8
|
1.0
|
C20
|
9:UTI600
|
2.4
|
72.8
|
1.0
|
C18
|
9:UTI600
|
2.4
|
72.8
|
1.0
|
O24
|
9:UTI600
|
2.8
|
72.8
|
1.0
|
C17
|
9:UTI600
|
2.8
|
72.8
|
1.0
|
C27
|
9:UTI600
|
3.3
|
72.8
|
1.0
|
C25
|
9:UTI600
|
3.4
|
72.8
|
1.0
|
C21
|
9:UTI600
|
3.6
|
72.8
|
1.0
|
C23
|
9:UTI600
|
3.6
|
72.8
|
1.0
|
O38
|
9:UTI600
|
3.7
|
72.8
|
1.0
|
C28
|
9:UTI600
|
3.7
|
72.8
|
1.0
|
C22
|
9:UTI600
|
4.1
|
72.8
|
1.0
|
C36
|
9:UTI600
|
4.2
|
72.8
|
1.0
|
C06
|
9:UTI600
|
4.3
|
72.8
|
1.0
|
C39
|
9:UTI600
|
4.4
|
72.8
|
1.0
|
C08
|
9:UTI600
|
4.5
|
72.8
|
1.0
|
C07
|
9:UTI600
|
4.6
|
72.8
|
1.0
|
N29
|
9:UTI600
|
4.7
|
72.8
|
1.0
|
|
Reference:
Y.Zhang,
Y.Lai,
F.Liu,
Z.Rao,
H.Gong.
Structure of Mycobacterium Tuberculosis Atp Synthase To Be Published.
Page generated: Fri Aug 2 21:00:20 2024
|