Fluorine in PDB 8kcu: Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752

The structure of Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752 (pdb code 8kcu). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752, PDB code: 8kcu:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752 within 5.0Å range: probe atom residue distance (Å) B Occ B:F502 b:60.3 occ:1.00 F03 B:OL9502 0.0 60.3 1.0 C19 B:OL9502 1.4 60.3 1.0 C24 B:OL9502 2.2 60.3 1.0 C15 B:OL9502 2.5 60.3 1.0 C12 B:OL9502 3.0 60.3 1.0 CB B:ALA431 3.2 60.5 1.0 C09 B:OL9502 3.2 60.3 1.0 C14 B:OL9502 3.3 60.3 1.0 C26 B:OL9502 3.5 60.3 1.0 C20 B:OL9502 3.7 60.3 1.0 O05 B:OL9502 3.8 60.3 1.0 CG2 B:VAL272 3.8 65.5 1.0 C23 B:OL9502 4.0 60.3 1.0 CG1 B:VAL261 4.2 56.8 1.0 S02 B:OL9502 4.3 60.3 1.0 CA B:ALA431 4.3 60.5 1.0 C10 B:OL9502 4.6 60.3 1.0 C11 B:OL9502 4.6 60.3 1.0 C B:ALA431 4.7 60.5 1.0 CB B:VAL272 4.7 65.5 1.0 N B:LEU432 4.7 57.8 1.0 CG1 B:VAL272 4.7 65.5 1.0 O B:LEU432 4.8 57.8 1.0 O B:LEU268 5.0 60.9 1.0

Fluorine binding site 2 out of 2 in the Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Human Gamma-Secretase in Complex with Mk-0752 within 5.0Å range: probe atom residue distance (Å) B Occ B:F502 b:60.3 occ:1.00 F04 B:OL9502 0.0 60.3 1.0 C23 B:OL9502 1.3 60.3 1.0 C20 B:OL9502 2.3 60.3 1.0 C26 B:OL9502 2.3 60.3 1.0 OD2 B:ASP385 2.4 53.4 1.0 CG B:ASP385 3.3 53.4 1.0 CB B:ALA434 3.5 54.5 1.0 OD1 B:ASP385 3.5 53.4 1.0 C24 B:OL9502 3.6 60.3 1.0 C15 B:OL9502 3.6 60.3 1.0 CD1 B:LEU381 3.9 55.7 1.0 C19 B:OL9502 4.0 60.3 1.0 N B:GLY382 4.2 53.6 1.0 N B:ALA434 4.2 54.5 1.0 CA B:ALA434 4.5 54.5 1.0 CB B:ASP385 4.7 53.4 1.0 C09 B:OL9502 4.8 60.3 1.0 CA B:GLY382 4.8 53.6 1.0 C11 B:OL9502 4.8 60.3 1.0 CG B:LEU381 4.9 55.7 1.0

X.Guo, H.Li, U.Kai, C.Yan, J.Lei, R.Zhou, Y.Shi. Structural Basis of Gamma-Secretase Inhibition By Anti-Cancer Clinical Drugs To Be Published.