Atomistry » Fluorine » PDB 8jt6-8ogy » 8ogw
Atomistry »
  Fluorine »
    PDB 8jt6-8ogy »
      8ogw »

Fluorine in PDB 8ogw: Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02

Enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02

All present enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02:
2.7.7.85;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02, PDB code: 8ogw was solved by T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.69 / 1.17
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.87, 39.24, 68.17, 90, 95.31, 90
R / Rfree (%) 17.9 / 19.4

Other elements in 8ogw:

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 (pdb code 8ogw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02, PDB code: 8ogw:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 1 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:35.8
occ:0.42
 F1 A:SY4301 0.0 35.8 0.4
C6 A:SY4301 1.4 24.3 0.4
O A:HOH515 2.0 52.1 0.6
C5 A:SY4301 2.4 24.2 0.4
C7 A:SY4301 2.4 28.0 0.4
N1 A:SY4301 2.8 27.2 0.4
HE1 A:TYR187 3.1 41.7 0.6
HD11 A:LEU190 3.4 34.8 1.0
C4 A:SY4301 3.6 23.1 0.4
C8 A:SY4301 3.6 27.3 0.4
HG A:LEU190 3.7 32.0 1.0
O A:HOH481 3.9 30.0 1.0
CE1 A:TYR187 4.0 34.6 0.6
C3 A:SY4301 4.1 25.2 0.4
CD1 A:LEU190 4.2 28.8 1.0
HD1 A:TYR187 4.2 39.3 0.6
HD12 A:LEU190 4.3 34.8 1.0
CG A:LEU190 4.4 26.5 1.0
HD2 A:TYR187 4.6 41.0 0.4
CD1 A:TYR187 4.6 32.6 0.6
HD21 A:LEU190 4.6 33.4 1.0
F A:SY4301 4.8 36.0 0.4

Fluorine binding site 2 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 2 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:36.0
occ:0.42
 F A:SY4301 0.0 36.0 0.4
C8 A:SY4301 1.4 27.3 0.4
C3 A:SY4301 2.4 25.2 0.4
C7 A:SY4301 2.4 28.0 0.4
N A:SY4301 2.8 24.8 0.4
O A:HOH515 3.2 52.1 0.6
HB A:THR202 3.5 39.2 1.0
C6 A:SY4301 3.6 24.3 0.4
C4 A:SY4301 3.7 23.1 0.4
HG21 A:THR202 4.0 40.5 1.0
HD21 A:LEU190 4.0 33.4 1.0
S A:SY4301 4.1 27.8 0.4
C5 A:SY4301 4.1 24.2 0.4
OG1 A:THR202 4.2 36.2 1.0
CB A:THR202 4.2 32.5 1.0
HD11 A:LEU190 4.2 34.8 1.0
C2 A:SY4301 4.3 25.5 0.4
C1 A:SY4301 4.6 28.4 0.4
CG2 A:THR202 4.6 33.6 1.0
O A:HOH494 4.6 52.1 0.6
HG1 A:THR202 4.7 43.6 1.0
F1 A:SY4301 4.8 35.8 0.4
O A:SY4301 4.8 22.5 0.4
CD2 A:LEU190 4.9 27.7 1.0
HG22 A:THR202 5.0 40.5 1.0

Fluorine binding site 3 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 3 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:36.7
occ:0.46
 F1 B:SY4301 0.0 36.7 0.5
C6 B:SY4301 1.4 25.5 0.5
C5 B:SY4301 2.4 23.9 0.5
C7 B:SY4301 2.4 29.8 0.5
N1 B:SY4301 2.8 26.8 0.5
HD11 B:LEU190 3.1 33.3 1.0
HE2 B:TYR187 3.2 39.8 0.5
C8 B:SY4301 3.6 24.1 0.5
C4 B:SY4301 3.6 20.4 0.5
HG B:LEU190 3.7 30.4 1.0
CD1 B:LEU190 4.0 27.6 1.0
HE2 B:TYR187 4.0 42.9 0.5
CE2 B:TYR187 4.1 33.0 0.5
C3 B:SY4301 4.1 23.0 0.5
O B:HOH485 4.2 33.3 1.0
HD2 B:TYR187 4.3 40.9 0.5
HD2 B:TYR187 4.3 38.7 0.5
CG B:LEU190 4.4 25.2 1.0
HD12 B:LEU190 4.5 33.3 1.0
HH B:TYR187 4.6 40.9 0.5
HD13 B:LEU190 4.6 33.3 1.0
CD2 B:TYR187 4.7 32.1 0.5
HD21 B:LEU190 4.7 32.2 1.0
F B:SY4301 4.8 41.2 0.5
CE2 B:TYR187 4.8 35.6 0.5
CD2 B:TYR187 4.9 33.9 0.5

Fluorine binding site 4 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 4 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:41.2
occ:0.46
 F B:SY4301 0.0 41.2 0.5
C8 B:SY4301 1.4 24.1 0.5
C7 B:SY4301 2.4 29.8 0.5
C3 B:SY4301 2.4 23.0 0.5
N B:SY4301 2.8 24.9 0.5
HB B:THR202 3.5 33.5 1.0
C6 B:SY4301 3.6 25.5 0.5
C4 B:SY4301 3.7 20.4 0.5
HG1 B:THR202 3.8 38.5 1.0
HG21 B:THR202 3.9 33.3 1.0
CB B:THR202 4.1 27.8 1.0
C5 B:SY4301 4.1 23.9 0.5
C1 B:SY4301 4.2 29.3 0.5
S B:SY4301 4.2 27.4 0.5
OG1 B:THR202 4.3 31.9 1.0
HD21 B:LEU190 4.3 32.2 1.0
HG22 B:THR202 4.3 33.3 1.0
CG2 B:THR202 4.3 27.6 1.0
HE2 B:TYR187 4.4 42.9 0.5
C2 B:SY4301 4.4 26.6 0.5
HD11 B:LEU190 4.6 33.3 1.0
F1 B:SY4301 4.8 36.7 0.5
HD13 B:LEU190 4.8 33.3 1.0
O1 B:SY4301 5.0 25.1 0.5
CE2 B:TYR187 5.0 35.6 0.5

Reference:

T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner. Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X-Entry D02 To Be Published.
Page generated: Fri Aug 2 21:08:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy