Atomistry » Fluorine » PDB 8jvj-8ou5 » 8ogw
Atomistry »
  Fluorine »
    PDB 8jvj-8ou5 »
      8ogw »

Fluorine in PDB 8ogw: Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02

Enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02

All present enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02:
2.7.7.85;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02, PDB code: 8ogw was solved by T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.69 / 1.17
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.87, 39.24, 68.17, 90, 95.31, 90
R / Rfree (%) 17.9 / 19.4

Other elements in 8ogw:

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 (pdb code 8ogw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02, PDB code: 8ogw:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 1 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:35.8
occ:0.42
 F1 A:SY4301 0.0 35.8 0.4
C6 A:SY4301 1.4 24.3 0.4
O A:HOH515 2.0 52.1 0.6
C5 A:SY4301 2.4 24.2 0.4
C7 A:SY4301 2.4 28.0 0.4
N1 A:SY4301 2.8 27.2 0.4
HE1 A:TYR187 3.1 41.7 0.6
HD11 A:LEU190 3.4 34.8 1.0
C4 A:SY4301 3.6 23.1 0.4
C8 A:SY4301 3.6 27.3 0.4
HG A:LEU190 3.7 32.0 1.0
O A:HOH481 3.9 30.0 1.0
CE1 A:TYR187 4.0 34.6 0.6
C3 A:SY4301 4.1 25.2 0.4
CD1 A:LEU190 4.2 28.8 1.0
HD1 A:TYR187 4.2 39.3 0.6
HD12 A:LEU190 4.3 34.8 1.0
CG A:LEU190 4.4 26.5 1.0
HD2 A:TYR187 4.6 41.0 0.4
CD1 A:TYR187 4.6 32.6 0.6
HD21 A:LEU190 4.6 33.4 1.0
F A:SY4301 4.8 36.0 0.4

Fluorine binding site 2 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 2 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:36.0
occ:0.42
 F A:SY4301 0.0 36.0 0.4
C8 A:SY4301 1.4 27.3 0.4
C3 A:SY4301 2.4 25.2 0.4
C7 A:SY4301 2.4 28.0 0.4
N A:SY4301 2.8 24.8 0.4
O A:HOH515 3.2 52.1 0.6
HB A:THR202 3.5 39.2 1.0
C6 A:SY4301 3.6 24.3 0.4
C4 A:SY4301 3.7 23.1 0.4
HG21 A:THR202 4.0 40.5 1.0
HD21 A:LEU190 4.0 33.4 1.0
S A:SY4301 4.1 27.8 0.4
C5 A:SY4301 4.1 24.2 0.4
OG1 A:THR202 4.2 36.2 1.0
CB A:THR202 4.2 32.5 1.0
HD11 A:LEU190 4.2 34.8 1.0
C2 A:SY4301 4.3 25.5 0.4
C1 A:SY4301 4.6 28.4 0.4
CG2 A:THR202 4.6 33.6 1.0
O A:HOH494 4.6 52.1 0.6
HG1 A:THR202 4.7 43.6 1.0
F1 A:SY4301 4.8 35.8 0.4
O A:SY4301 4.8 22.5 0.4
CD2 A:LEU190 4.9 27.7 1.0
HG22 A:THR202 5.0 40.5 1.0

Fluorine binding site 3 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 3 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:36.7
occ:0.46
 F1 B:SY4301 0.0 36.7 0.5
C6 B:SY4301 1.4 25.5 0.5
C5 B:SY4301 2.4 23.9 0.5
C7 B:SY4301 2.4 29.8 0.5
N1 B:SY4301 2.8 26.8 0.5
HD11 B:LEU190 3.1 33.3 1.0
HE2 B:TYR187 3.2 39.8 0.5
C8 B:SY4301 3.6 24.1 0.5
C4 B:SY4301 3.6 20.4 0.5
HG B:LEU190 3.7 30.4 1.0
CD1 B:LEU190 4.0 27.6 1.0
HE2 B:TYR187 4.0 42.9 0.5
CE2 B:TYR187 4.1 33.0 0.5
C3 B:SY4301 4.1 23.0 0.5
O B:HOH485 4.2 33.3 1.0
HD2 B:TYR187 4.3 40.9 0.5
HD2 B:TYR187 4.3 38.7 0.5
CG B:LEU190 4.4 25.2 1.0
HD12 B:LEU190 4.5 33.3 1.0
HH B:TYR187 4.6 40.9 0.5
HD13 B:LEU190 4.6 33.3 1.0
CD2 B:TYR187 4.7 32.1 0.5
HD21 B:LEU190 4.7 32.2 1.0
F B:SY4301 4.8 41.2 0.5
CE2 B:TYR187 4.8 35.6 0.5
CD2 B:TYR187 4.9 33.9 0.5

Fluorine binding site 4 out of 4 in 8ogw

Go back to Fluorine Binding Sites List in 8ogw
Fluorine binding site 4 out of 4 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry D02 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:41.2
occ:0.46
 F B:SY4301 0.0 41.2 0.5
C8 B:SY4301 1.4 24.1 0.5
C7 B:SY4301 2.4 29.8 0.5
C3 B:SY4301 2.4 23.0 0.5
N B:SY4301 2.8 24.9 0.5
HB B:THR202 3.5 33.5 1.0
C6 B:SY4301 3.6 25.5 0.5
C4 B:SY4301 3.7 20.4 0.5
HG1 B:THR202 3.8 38.5 1.0
HG21 B:THR202 3.9 33.3 1.0
CB B:THR202 4.1 27.8 1.0
C5 B:SY4301 4.1 23.9 0.5
C1 B:SY4301 4.2 29.3 0.5
S B:SY4301 4.2 27.4 0.5
OG1 B:THR202 4.3 31.9 1.0
HD21 B:LEU190 4.3 32.2 1.0
HG22 B:THR202 4.3 33.3 1.0
CG2 B:THR202 4.3 27.6 1.0
HE2 B:TYR187 4.4 42.9 0.5
C2 B:SY4301 4.4 26.6 0.5
HD11 B:LEU190 4.6 33.3 1.0
F1 B:SY4301 4.8 36.7 0.5
HD13 B:LEU190 4.8 33.3 1.0
O1 B:SY4301 5.0 25.1 0.5
CE2 B:TYR187 5.0 35.6 0.5

Reference:

T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner. Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X-Entry D02 To Be Published.
Page generated: Fri Aug 2 21:08:44 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy