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Fluorine in PDB 8oie: Iron Nitrogenase Complex From Rhodobacter Capsulatus

Enzymatic activity of Iron Nitrogenase Complex From Rhodobacter Capsulatus

All present enzymatic activity of Iron Nitrogenase Complex From Rhodobacter Capsulatus:
1.18.6.1;

Other elements in 8oie:

The structure of Iron Nitrogenase Complex From Rhodobacter Capsulatus also contains other interesting chemical elements:

Aluminium (Al) 4 atoms
Iron (Fe) 40 atoms
Magnesium (Mg) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Iron Nitrogenase Complex From Rhodobacter Capsulatus (pdb code 8oie). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Iron Nitrogenase Complex From Rhodobacter Capsulatus, PDB code: 8oie:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 8oie

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Fluorine binding site 1 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F303

b:79.3
occ:1.00
 F1 D:AF3303 0.0 79.3 1.0
AL D:AF3303 1.8 62.1 1.0
MG D:MG302 2.3 60.1 1.0
O1B D:ADP301 2.4 69.0 1.0
O2B D:ADP301 2.9 68.2 1.0
PB D:ADP301 3.0 55.6 1.0
F2 D:AF3303 3.1 73.4 1.0
F3 D:AF3303 3.1 73.7 1.0
OD2 D:ASP40 3.4 72.8 1.0
O3B D:ADP301 3.7 48.9 1.0
CE D:LYS15 3.7 44.6 1.0
CA D:LEU127 3.9 46.6 1.0
O D:VAL126 3.9 65.5 1.0
NZ D:LYS15 4.0 49.6 1.0
N D:GLY128 4.3 55.4 1.0
C D:LEU127 4.3 55.9 1.0
NZ D:LYS42 4.3 62.6 1.0
OG D:SER16 4.4 60.3 1.0
CG D:ASP40 4.5 70.1 1.0
O3A D:ADP301 4.5 61.5 1.0
C D:VAL126 4.7 56.0 1.0
N D:LEU127 4.7 58.9 1.0
CB D:LEU127 4.8 45.3 1.0
CB D:LYS15 4.9 47.0 1.0

Fluorine binding site 2 out of 12 in 8oie

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Fluorine binding site 2 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F303

b:73.4
occ:1.00
 F2 D:AF3303 0.0 73.4 1.0
AL D:AF3303 1.8 62.1 1.0
O1B D:ADP301 2.8 69.0 1.0
N D:GLY12 3.0 48.2 1.0
CA D:GLY11 3.0 50.3 1.0
NZ D:LYS15 3.0 49.6 1.0
F3 D:AF3303 3.1 73.7 1.0
F1 D:AF3303 3.1 79.3 1.0
N D:GLY128 3.3 55.4 1.0
CA D:GLY128 3.4 49.0 1.0
C D:GLY11 3.5 49.3 1.0
O3B D:ADP301 3.8 48.9 1.0
CE D:LYS15 3.8 44.6 1.0
PB D:ADP301 3.8 55.6 1.0
OD2 E:ASP129 3.9 74.4 1.0
O D:LYS10 4.0 52.6 1.0
N D:GLY11 4.1 54.3 1.0
CA D:GLY12 4.1 51.4 1.0
C D:LEU127 4.2 55.9 1.0
C D:LYS10 4.5 49.2 1.0
C D:GLY128 4.6 55.8 1.0
CA D:LEU127 4.7 46.6 1.0
O D:GLY11 4.7 60.8 1.0
O2B D:ADP301 4.8 68.2 1.0
CG E:ASP129 4.8 73.3 1.0
OD1 E:ASP129 4.8 70.3 1.0
CA E:GLY11 4.9 54.6 1.0

Fluorine binding site 3 out of 12 in 8oie

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Fluorine binding site 3 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F303

b:73.7
occ:1.00
 F3 D:AF3303 0.0 73.7 1.0
AL D:AF3303 1.8 62.1 1.0
O1B D:ADP301 2.6 69.0 1.0
NZ D:LYS42 2.7 62.6 1.0
F2 D:AF3303 3.1 73.4 1.0
NZ E:LYS10 3.1 56.4 1.0
F1 D:AF3303 3.1 79.3 1.0
CE D:LYS42 3.8 63.3 1.0
CE E:LYS10 3.8 57.5 1.0
PB D:ADP301 4.1 55.6 1.0
OD1 E:ASP129 4.1 70.3 1.0
OD2 D:ASP40 4.1 72.8 1.0
CG E:LYS10 4.3 61.8 1.0
N D:GLY12 4.5 48.2 1.0
MG D:MG302 4.5 60.1 1.0
O2B D:ADP301 4.7 68.2 1.0
OD2 E:ASP129 4.7 74.4 1.0
CD E:LYS10 4.7 58.4 1.0
N E:GLY11 4.8 57.0 1.0
O3A D:ADP301 4.8 61.5 1.0
CG E:ASP129 4.8 73.3 1.0
CA D:GLY12 4.8 51.4 1.0
CD D:LYS42 4.9 64.6 1.0
OD2 D:ASP44 5.0 73.9 1.0

Fluorine binding site 4 out of 12 in 8oie

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Fluorine binding site 4 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:74.6
occ:1.00
 F1 E:AF3303 0.0 74.6 1.0
AL E:AF3303 1.8 60.3 1.0
MG E:MG302 2.3 58.4 1.0
O3B E:ADP301 2.7 60.6 1.0
OD2 E:ASP40 3.1 75.3 1.0
F3 E:AF3303 3.1 72.3 1.0
F2 E:AF3303 3.1 82.1 1.0
O2B E:ADP301 3.2 69.6 1.0
PB E:ADP301 3.4 62.5 1.0
CA E:LEU127 3.8 54.5 1.0
NZ E:LYS42 4.0 67.9 1.0
CG E:ASP40 4.1 69.9 1.0
O1B E:ADP301 4.2 61.4 1.0
CE E:LYS15 4.2 51.2 1.0
CB E:LEU127 4.4 52.0 1.0
OG E:SER16 4.4 66.1 1.0
N E:GLY128 4.4 50.6 1.0
O E:VAL126 4.4 68.3 1.0
C E:LEU127 4.5 55.3 1.0
NZ E:LYS15 4.5 45.0 1.0
N E:LEU127 4.6 56.3 1.0
CB E:ASP40 4.8 61.9 1.0
O3A E:ADP301 4.8 61.8 1.0
C E:VAL126 4.9 55.8 1.0
OD1 E:ASP44 5.0 83.1 1.0
OD1 D:ASP129 5.0 61.2 1.0
OD1 E:ASP40 5.0 70.0 1.0
NZ D:LYS10 5.0 43.4 1.0

Fluorine binding site 5 out of 12 in 8oie

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Fluorine binding site 5 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:82.1
occ:1.00
 F2 E:AF3303 0.0 82.1 1.0
AL E:AF3303 1.8 60.3 1.0
O3B E:ADP301 2.7 60.6 1.0
NZ E:LYS15 2.8 45.0 1.0
CA E:GLY11 2.9 54.6 1.0
N E:GLY12 2.9 56.5 1.0
F1 E:AF3303 3.1 74.6 1.0
F3 E:AF3303 3.1 72.3 1.0
N E:GLY128 3.3 50.6 1.0
C E:GLY11 3.4 58.5 1.0
CA E:GLY128 3.6 52.5 1.0
CE E:LYS15 3.6 51.2 1.0
O1B E:ADP301 3.6 61.4 1.0
PB E:ADP301 3.6 62.5 1.0
N E:GLY11 4.0 57.0 1.0
O E:LYS10 4.1 72.7 1.0
CA E:GLY12 4.1 47.5 1.0
C E:LEU127 4.1 55.3 1.0
OD2 D:ASP129 4.4 70.0 1.0
C E:LYS10 4.4 66.8 1.0
CA E:LEU127 4.5 54.5 1.0
O2B E:ADP301 4.5 69.6 1.0
O E:GLY11 4.6 68.2 1.0
C E:GLY128 4.9 56.4 1.0
O3A E:ADP301 4.9 61.8 1.0
OD1 D:ASP129 4.9 61.2 1.0
CA D:GLY11 4.9 50.3 1.0
MG E:MG302 4.9 58.4 1.0

Fluorine binding site 6 out of 12 in 8oie

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Fluorine binding site 6 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:72.3
occ:1.00
 F3 E:AF3303 0.0 72.3 1.0
AL E:AF3303 1.8 60.3 1.0
O3B E:ADP301 2.3 60.6 1.0
NZ D:LYS10 2.7 43.4 1.0
F1 E:AF3303 3.1 74.6 1.0
F2 E:AF3303 3.1 82.1 1.0
NZ E:LYS42 3.2 67.9 1.0
CE D:LYS10 3.3 41.9 1.0
PB E:ADP301 3.7 62.5 1.0
CG D:LYS10 3.9 48.6 1.0
N E:GLY12 4.0 56.5 1.0
CD D:LYS10 4.2 45.9 1.0
CE E:LYS42 4.4 64.1 1.0
CA E:GLY12 4.4 47.5 1.0
O3A E:ADP301 4.4 61.8 1.0
N D:GLY11 4.4 54.3 1.0
O2B E:ADP301 4.4 69.6 1.0
MG E:MG302 4.6 58.4 1.0
OD2 E:ASP40 4.6 75.3 1.0
OD1 D:ASP129 4.7 61.2 1.0
O1B E:ADP301 4.7 61.4 1.0
CA D:GLY11 4.8 50.3 1.0
O2A E:ADP301 4.9 66.2 1.0
C E:GLY11 5.0 58.5 1.0

Fluorine binding site 7 out of 12 in 8oie

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Fluorine binding site 7 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F303

b:76.6
occ:1.00
 F1 I:AF3303 0.0 76.6 1.0
AL I:AF3303 1.8 61.5 1.0
O1B I:ADP301 2.4 68.6 1.0
MG I:MG302 2.5 56.1 1.0
F3 I:AF3303 3.1 71.1 1.0
F2 I:AF3303 3.1 70.9 1.0
O2B I:ADP301 3.1 67.7 1.0
PB I:ADP301 3.2 54.2 1.0
OD2 I:ASP40 3.2 72.5 1.0
CA I:LEU127 3.7 46.7 1.0
CE I:LYS15 3.8 44.7 1.0
O3B I:ADP301 3.9 48.2 1.0
O I:VAL126 4.0 66.7 1.0
N I:GLY128 4.1 54.5 1.0
NZ I:LYS15 4.1 49.5 1.0
C I:LEU127 4.2 55.6 1.0
NZ I:LYS42 4.2 62.9 1.0
CG I:ASP40 4.3 70.1 1.0
OG I:SER16 4.5 59.5 1.0
N I:LEU127 4.6 56.8 1.0
CB I:LEU127 4.6 45.9 1.0
O3A I:ADP301 4.6 61.0 1.0
C I:VAL126 4.7 55.5 1.0
CB I:ASP40 5.0 63.6 1.0

Fluorine binding site 8 out of 12 in 8oie

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Fluorine binding site 8 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F303

b:70.9
occ:1.00
 F2 I:AF3303 0.0 70.9 1.0
AL I:AF3303 1.8 61.5 1.0
O1B I:ADP301 2.6 68.6 1.0
N I:GLY12 2.8 49.3 1.0
CA I:GLY11 2.9 50.5 1.0
NZ I:LYS15 3.0 49.5 1.0
F3 I:AF3303 3.1 71.1 1.0
F1 I:AF3303 3.1 76.6 1.0
N I:GLY128 3.4 54.5 1.0
C I:GLY11 3.4 50.0 1.0
CA I:GLY128 3.5 49.2 1.0
O3B I:ADP301 3.7 48.2 1.0
PB I:ADP301 3.7 54.2 1.0
CE I:LYS15 3.8 44.7 1.0
O I:LYS10 4.0 52.9 1.0
CA I:GLY12 4.0 50.7 1.0
OD2 J:ASP129 4.0 77.7 1.0
N I:GLY11 4.1 54.0 1.0
C I:LEU127 4.3 55.6 1.0
C I:LYS10 4.4 49.8 1.0
O I:GLY11 4.6 60.0 1.0
C I:GLY128 4.7 56.1 1.0
O2B I:ADP301 4.8 67.7 1.0
CA J:GLY11 4.8 53.6 1.0
CA I:LEU127 4.8 46.7 1.0
O3A I:ADP301 4.9 61.0 1.0
OD1 J:ASP129 4.9 73.2 1.0
CG J:ASP129 4.9 75.9 1.0

Fluorine binding site 9 out of 12 in 8oie

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Fluorine binding site 9 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F303

b:71.1
occ:1.00
 F3 I:AF3303 0.0 71.1 1.0
AL I:AF3303 1.8 61.5 1.0
O1B I:ADP301 2.5 68.6 1.0
NZ I:LYS42 2.8 62.9 1.0
NZ J:LYS10 3.0 56.4 1.0
F2 I:AF3303 3.1 70.9 1.0
F1 I:AF3303 3.1 76.6 1.0
CE J:LYS10 3.7 58.8 1.0
CE I:LYS42 3.9 62.5 1.0
PB I:ADP301 4.0 54.2 1.0
OD1 J:ASP129 4.2 73.2 1.0
OD2 I:ASP40 4.2 72.5 1.0
CG J:LYS10 4.2 63.1 1.0
N I:GLY12 4.3 49.3 1.0
MG I:MG302 4.5 56.1 1.0
O3A I:ADP301 4.6 61.0 1.0
O2B I:ADP301 4.6 67.7 1.0
CD J:LYS10 4.6 58.7 1.0
CA I:GLY12 4.7 50.7 1.0
N J:GLY11 4.7 58.1 1.0
OD2 J:ASP129 4.8 77.7 1.0
O3B I:ADP301 4.9 48.2 1.0
CG J:ASP129 4.9 75.9 1.0
OD2 I:ASP44 4.9 72.7 1.0

Fluorine binding site 10 out of 12 in 8oie

Go back to Fluorine Binding Sites List in 8oie
Fluorine binding site 10 out of 12 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range:
probe atom residue distance (Å) B Occ
J:F303

b:74.1
occ:1.00
 F1 J:AF3303 0.0 74.1 1.0
AL J:AF3303 1.8 61.6 1.0
MG J:MG302 2.1 61.2 1.0
O3B J:ADP301 2.8 60.9 1.0
OD2 J:ASP40 3.0 77.9 1.0
F3 J:AF3303 3.1 68.3 1.0
F2 J:AF3303 3.1 80.0 1.0
O2B J:ADP301 3.2 70.3 1.0
PB J:ADP301 3.5 63.2 1.0
CA J:LEU127 3.8 53.8 1.0
NZ J:LYS42 4.0 69.4 1.0
CG J:ASP40 4.0 71.3 1.0
OG J:SER16 4.2 65.9 1.0
O1B J:ADP301 4.3 61.9 1.0
CE J:LYS15 4.3 52.0 1.0
CB J:LEU127 4.4 51.5 1.0
O J:VAL126 4.5 69.7 1.0
C J:LEU127 4.6 53.9 1.0
N J:GLY128 4.6 52.2 1.0
N J:LEU127 4.6 56.9 1.0
NZ J:LYS15 4.6 45.2 1.0
CB J:ASP40 4.7 62.2 1.0
OD1 J:ASP44 4.8 84.4 1.0
C J:VAL126 4.9 56.5 1.0
O3A J:ADP301 4.9 62.9 1.0
OD1 J:ASP40 4.9 71.2 1.0

Reference:

F.V.Schmidt, L.Schulz, J.Zarzycki, S.Prinz, N.N.Oehlmann, T.J.Erb, J.G.Rebelein. Structural Insights Into the Iron Nitrogenase Complex Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01124-2
Page generated: Thu Dec 28 04:40:17 2023

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