Fluorine in PDB 8oo9: Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1

The structure of Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Aluminium	(Al)	1 atom

The binding sites of Fluorine atom in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1 (pdb code 8oo9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1, PDB code: 8oo9:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:51.9 occ:1.00 F1 G:ALF2003 0.0 51.9 1.0 AL G:ALF2003 1.8 61.9 1.0 O1B G:ADP2001 2.5 51.9 1.0 F4 G:ALF2003 2.5 62.0 1.0 F3 G:ALF2003 2.6 62.5 1.0 NZ G:LYS1003 2.8 48.6 1.0 CE G:LYS1003 3.2 45.6 1.0 PB G:ADP2001 3.5 39.9 1.0 F2 G:ALF2003 3.6 70.9 1.0 O3B G:ADP2001 3.8 52.6 1.0 OE2 G:GLU1108 4.0 69.7 1.0 OE1 G:GLU1108 4.0 66.6 1.0 O2B G:ADP2001 4.1 58.6 1.0 CA G:MET999 4.1 47.8 1.0 CG G:MET999 4.2 44.9 1.0 MG G:MG2002 4.3 64.3 1.0 NE2 G:GLN1657 4.4 54.7 1.0 CD G:GLU1108 4.4 71.3 1.0 OE1 G:GLN1657 4.5 61.6 1.0 CB G:MET999 4.5 43.6 1.0 N G:GLY1136 4.6 60.2 1.0 N G:GLY1000 4.7 44.2 1.0 CD G:LYS1003 4.7 41.0 1.0 O3A G:ADP2001 4.8 57.6 1.0 N G:MET999 4.9 57.1 1.0 NH1 G:ARG1664 4.9 59.3 1.0 CD G:GLN1657 4.9 60.5 1.0 NH2 G:ARG1661 4.9 34.5 1.0 C G:MET999 5.0 46.7 1.0

Fluorine binding site 2 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:70.9 occ:1.00 F2 G:ALF2003 0.0 70.9 1.0 AL G:ALF2003 1.8 61.9 1.0 F4 G:ALF2003 2.5 62.0 1.0 F3 G:ALF2003 2.5 62.5 1.0 O1B G:ADP2001 2.6 51.9 1.0 NH2 G:ARG1661 2.9 34.5 1.0 NH2 G:ARG1664 3.0 60.2 1.0 CA G:GLY1634 3.1 57.1 1.0 O G:GLY1634 3.1 58.6 1.0 NH1 G:ARG1664 3.3 59.3 1.0 N G:GLY1634 3.3 50.8 1.0 C G:GLY1634 3.4 57.0 1.0 CZ G:ARG1664 3.5 57.9 1.0 MG G:MG2002 3.6 64.3 1.0 F1 G:ALF2003 3.6 51.9 1.0 PB G:ADP2001 3.6 39.9 1.0 O2B G:ADP2001 3.6 58.6 1.0 CZ G:ARG1661 3.8 54.1 1.0 O3A G:ADP2001 4.1 57.6 1.0 OE2 G:GLU1108 4.2 69.7 1.0 O1A G:ADP2001 4.4 58.6 1.0 N G:ILE1635 4.5 57.6 1.0 NE G:ARG1661 4.5 59.5 1.0 NH1 G:ARG1661 4.6 63.3 1.0 C G:LEU1633 4.6 45.9 1.0 NE G:ARG1664 4.7 55.1 1.0 O G:ILE1635 4.7 58.0 1.0 O3B G:ADP2001 4.9 52.6 1.0 PA G:ADP2001 5.0 55.5 1.0

Fluorine binding site 3 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:62.5 occ:1.00 F3 G:ALF2003 0.0 62.5 1.0 AL G:ALF2003 1.8 61.9 1.0 MG G:MG2002 1.9 64.3 1.0 F2 G:ALF2003 2.5 70.9 1.0 O1B G:ADP2001 2.6 51.9 1.0 F1 G:ALF2003 2.6 51.9 1.0 O2B G:ADP2001 2.7 58.6 1.0 OE2 G:GLU1108 2.8 69.7 1.0 PB G:ADP2001 3.1 39.9 1.0 F4 G:ALF2003 3.6 62.0 1.0 CD G:GLU1108 3.8 71.3 1.0 O3B G:ADP2001 4.0 52.6 1.0 OE1 G:GLU1108 4.2 66.6 1.0 CA G:GLY1634 4.3 57.1 1.0 O3A G:ADP2001 4.4 57.6 1.0 CE G:LYS1003 4.4 45.6 1.0 NZ G:LYS1003 4.5 48.6 1.0 N G:GLY1634 4.6 50.8 1.0 NH2 G:ARG1664 4.8 60.2 1.0 O G:GLY1634 4.8 58.6 1.0 O1A G:ADP2001 4.9 58.6 1.0

Fluorine binding site 4 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Dna Refinement STATE1 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:62.0 occ:1.00 F4 G:ALF2003 0.0 62.0 1.0 AL G:ALF2003 1.8 61.9 1.0 O1B G:ADP2001 2.5 51.9 1.0 F1 G:ALF2003 2.5 51.9 1.0 F2 G:ALF2003 2.5 70.9 1.0 NH2 G:ARG1661 2.5 34.5 1.0 NH1 G:ARG1664 2.9 59.3 1.0 CG G:MET999 3.5 44.9 1.0 CB G:MET999 3.5 43.6 1.0 F3 G:ALF2003 3.6 62.5 1.0 CZ G:ARG1661 3.6 54.1 1.0 OE1 G:GLN1657 3.6 61.6 1.0 CA G:MET999 3.7 47.8 1.0 N G:GLY1000 3.9 44.2 1.0 NH1 G:ARG1661 3.9 63.3 1.0 PB G:ADP2001 3.9 39.9 1.0 CZ G:ARG1664 4.0 57.9 1.0 NH2 G:ARG1664 4.2 60.2 1.0 C G:MET999 4.2 46.7 1.0 CD G:GLN1657 4.6 60.5 1.0 O3A G:ADP2001 4.6 57.6 1.0 NE2 G:GLN1657 4.7 54.7 1.0 O3B G:ADP2001 4.7 52.6 1.0 NZ G:LYS1003 4.8 48.6 1.0 NE G:ARG1661 4.8 59.5 1.0 O2B G:ADP2001 4.8 58.6 1.0 N G:GLY1634 4.8 50.8 1.0 CA G:GLY1000 4.9 42.9 1.0 O G:ASP1660 5.0 60.7 1.0 N G:MET999 5.0 57.1 1.0

M.Zhang, A.Jungblut, F.Kunert, L.Hauptmann, T.Hoffmann, O.Kolesnikova, F.Metzner, M.Moldt, F.Weis, F.Dimaio, K.P.Hopfner, S.Eustermann. Hexasome-INO80 Complex Reveals Structural Basis of Noncanonical Nucleosome Remodeling. Science F6287 2023.
ISSN: ESSN 1095-9203
PubMed: 37384673
DOI: 10.1126/SCIENCE.ADF6287