Fluorine in PDB 8oos: Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2

The structure of Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2 also contains other interesting chemical elements:

Aluminium	(Al)	1 atom
Magnesium	(Mg)	1 atom

The binding sites of Fluorine atom in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2 (pdb code 8oos). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2, PDB code: 8oos:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:75.3 occ:1.00 F1 G:ALF2003 0.0 75.3 1.0 AL G:ALF2003 1.8 93.9 1.0 F3 G:ALF2003 2.5 73.1 1.0 F4 G:ALF2003 2.5 79.4 1.0 O1B G:ADP2001 2.6 86.0 1.0 PB G:ADP2001 2.8 80.7 1.0 O3B G:ADP2001 2.9 66.1 1.0 CE G:LYS1003 3.0 68.4 1.0 O2B G:ADP2001 3.1 80.0 1.0 MG G:MG2002 3.2 71.2 1.0 NZ G:LYS1003 3.3 71.9 1.0 F2 G:ALF2003 3.6 86.2 1.0 CD G:LYS1003 4.3 71.1 1.0 O3A G:ADP2001 4.4 82.3 1.0 CB G:LYS1003 4.7 67.4 1.0 CA G:MET999 4.9 66.0 1.0 N G:GLY1000 4.9 57.7 1.0 O G:ASP1107 5.0 72.8 1.0

Fluorine binding site 2 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:86.2 occ:1.00 F2 G:ALF2003 0.0 86.2 1.0 AL G:ALF2003 1.8 93.9 1.0 O G:LEU1633 2.5 76.7 1.0 F4 G:ALF2003 2.5 79.4 1.0 F3 G:ALF2003 2.5 73.1 1.0 O1B G:ADP2001 2.7 86.0 1.0 CA G:GLY1634 3.3 66.2 1.0 C G:LEU1633 3.5 73.3 1.0 F1 G:ALF2003 3.6 75.3 1.0 NH1 G:ARG1664 3.6 70.1 1.0 NH2 G:ARG1664 3.8 76.8 1.0 N G:GLY1634 3.9 56.7 1.0 PB G:ADP2001 4.1 80.7 1.0 CZ G:ARG1664 4.2 74.4 1.0 MG G:MG2002 4.3 71.2 1.0 C G:GLY1634 4.3 62.3 1.0 O2B G:ADP2001 4.5 80.0 1.0 OE2 G:GLU1108 4.6 79.9 1.0 OE1 G:GLU1108 4.8 81.3 1.0 CA G:LEU1633 4.8 77.2 1.0 N G:ILE1635 4.8 63.4 1.0 CD G:GLU1108 4.9 84.8 1.0 CG G:MET999 5.0 60.2 1.0

Fluorine binding site 3 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:73.1 occ:1.00 F3 G:ALF2003 0.0 73.1 1.0 AL G:ALF2003 1.8 93.9 1.0 MG G:MG2002 1.9 71.2 1.0 F2 G:ALF2003 2.5 86.2 1.0 F1 G:ALF2003 2.5 75.3 1.0 O1B G:ADP2001 2.7 86.0 1.0 O2B G:ADP2001 2.9 80.0 1.0 PB G:ADP2001 3.3 80.7 1.0 F4 G:ALF2003 3.6 79.4 1.0 CA G:GLY1634 3.6 66.2 1.0 OE1 G:GLU1108 4.1 81.3 1.0 O G:LEU1633 4.1 76.7 1.0 NH2 G:ARG1664 4.2 76.8 1.0 O3B G:ADP2001 4.3 66.1 1.0 C G:GLY1634 4.4 62.3 1.0 O G:GLY1634 4.5 76.1 1.0 OG1 G:THR1004 4.5 68.3 1.0 CD G:GLU1108 4.6 84.8 1.0 O3A G:ADP2001 4.6 82.3 1.0 N G:GLY1634 4.6 56.7 1.0 C G:LEU1633 4.7 73.3 1.0 O G:ASP1107 4.8 72.8 1.0 OE2 G:GLU1108 4.8 79.9 1.0 O1A G:ADP2001 4.9 77.1 1.0

Fluorine binding site 4 out of 4 in the Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure INO80CORE Hexasome Complex Atpase-Hexasome Refinement State 2 within 5.0Å range: probe atom residue distance (Å) B Occ G:F2003 b:79.4 occ:1.00 F4 G:ALF2003 0.0 79.4 1.0 AL G:ALF2003 1.8 93.9 1.0 F2 G:ALF2003 2.5 86.2 1.0 F1 G:ALF2003 2.5 75.3 1.0 O1B G:ADP2001 2.6 86.0 1.0 CG G:MET999 3.1 60.2 1.0 CB G:MET999 3.1 55.9 1.0 CA G:MET999 3.2 66.0 1.0 F3 G:ALF2003 3.6 73.1 1.0 N G:GLY1000 3.7 57.7 1.0 PB G:ADP2001 3.7 80.7 1.0 O3B G:ADP2001 3.9 66.1 1.0 NZ G:LYS1003 3.9 71.9 1.0 C G:MET999 3.9 58.6 1.0 N G:MET999 4.3 71.8 1.0 CE G:LYS1003 4.3 68.4 1.0 O G:LEU1633 4.5 76.7 1.0 NH1 G:ARG1664 4.5 70.1 1.0 O2B G:ADP2001 4.7 80.0 1.0 SD G:MET999 4.7 80.9 1.0 O3A G:ADP2001 4.9 82.3 1.0 CA G:GLY1000 4.9 58.5 1.0 NH2 G:ARG1664 4.9 76.8 1.0

M.Zhang, A.Jungblut, F.Kunert, L.Hauptmann, T.Hoffmann, O.Kolesnikova, F.Metzner, M.Moldt, F.Weis, F.Dimaio, K.P.Hopfner, S.Eustermann. Hexasome-INO80 Complex Reveals Structural Basis of Noncanonical Nucleosome Remodeling. Science F6287 2023.
ISSN: ESSN 1095-9203
PubMed: 37384673
DOI: 10.1126/SCIENCE.ADF6287