Fluorine in PDB 8op5: Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)

Other elements in 8op5:

The structure of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) (pdb code 8op5). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound), PDB code: 8op5:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8op5

Go back to Fluorine Binding Sites List in 8op5
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:55.1
occ:1.00
 F1 A:ALF1402 0.0 55.1 1.0
AL A:ALF1402 1.8 68.6 1.0
O2B A:ADP1401 2.5 71.8 1.0
F4 A:ALF1402 2.5 60.3 1.0
F3 A:ALF1402 2.5 72.6 1.0
O3B A:ADP1401 3.0 79.5 1.0
N A:THR501 3.1 58.2 1.0
PB A:ADP1401 3.1 77.9 1.0
CB A:THR501 3.2 60.6 1.0
F2 A:ALF1402 3.6 71.1 1.0
OG1 A:THR501 3.6 61.3 1.0
CA A:THR501 3.7 62.1 1.0
O A:THR501 3.8 60.0 1.0
OD2 A:ASP499 3.9 61.2 1.0
O1B A:ADP1401 4.0 73.3 1.0
O A:HOH1501 4.1 73.8 1.0
OD1 A:ASP499 4.2 65.6 1.0
OG1 A:THR740 4.2 64.1 1.0
C A:LYS500 4.2 60.2 1.0
CB A:LYS500 4.2 44.6 1.0
C A:THR501 4.2 58.9 1.0
N A:LYS500 4.2 41.0 1.0
CG A:ASP499 4.3 53.5 1.0
MG A:MG1404 4.3 72.1 1.0
CA A:LYS500 4.4 45.4 1.0
CG2 A:THR501 4.5 61.8 1.0
O3A A:ADP1401 4.5 77.4 1.0
N A:GLY741 4.7 46.4 1.0
NH2 A:ARG674 4.9 63.3 1.0
CB A:THR740 4.9 57.8 1.0

Fluorine binding site 2 out of 4 in 8op5

Go back to Fluorine Binding Sites List in 8op5
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:71.1
occ:1.00
 F2 A:ALF1402 0.0 71.1 1.0
AL A:ALF1402 1.8 68.6 1.0
NZ A:LYS840 2.4 64.0 1.0
F3 A:ALF1402 2.5 72.6 1.0
F4 A:ALF1402 2.5 60.3 1.0
OD1 A:ASP499 2.9 65.6 1.0
OD2 A:ASP499 3.1 61.2 1.0
CG A:ASP499 3.4 53.5 1.0
F1 A:ALF1402 3.6 55.1 1.0
O3B A:ADP1401 3.6 79.5 1.0
CE A:LYS840 3.7 61.8 1.0
MG A:MG1404 3.8 72.1 1.0
CB A:ASN862 3.9 69.8 1.0
OD1 A:ASP863 3.9 75.5 1.0
O2B A:ADP1401 3.9 71.8 1.0
ND2 A:ASN862 4.1 81.8 1.0
CG A:ASN862 4.1 80.0 1.0
OD2 A:ASP863 4.3 77.1 1.0
PB A:ADP1401 4.3 77.9 1.0
CG A:ASP863 4.5 76.0 1.0
O3A A:ADP1401 4.5 77.4 1.0
N A:GLY741 4.5 46.4 1.0
O A:HOH1501 4.6 73.8 1.0
O A:ILE739 4.7 48.5 1.0
O2A A:ADP1401 4.8 81.2 1.0
OD1 A:ASN862 4.8 84.8 1.0
CA A:THR740 4.9 36.0 1.0
CD A:LYS840 4.9 54.6 1.0
CB A:ASP499 4.9 40.1 1.0
C A:THR740 5.0 45.5 1.0

Fluorine binding site 3 out of 4 in 8op5

Go back to Fluorine Binding Sites List in 8op5
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:72.6
occ:1.00
 F3 A:ALF1402 0.0 72.6 1.0
AL A:ALF1402 1.8 68.6 1.0
MG A:MG1404 2.0 72.1 1.0
O A:HOH1501 2.3 73.8 1.0
OD2 A:ASP499 2.4 61.2 1.0
F2 A:ALF1402 2.5 71.1 1.0
F1 A:ALF1402 2.5 55.1 1.0
O2B A:ADP1401 2.9 71.8 1.0
CG A:ASP499 3.3 53.5 1.0
O A:THR501 3.4 60.0 1.0
F4 A:ALF1402 3.6 60.3 1.0
OD1 A:ASP499 3.6 65.6 1.0
PB A:ADP1401 4.0 77.9 1.0
O3B A:ADP1401 4.1 79.5 1.0
C A:THR501 4.4 58.9 1.0
N A:THR501 4.4 58.2 1.0
OD2 A:ASP863 4.5 77.1 1.0
CB A:THR501 4.6 60.6 1.0
MG A:MG1403 4.6 65.7 1.0
O3A A:ADP1401 4.6 77.4 1.0
CB A:ASP499 4.6 40.1 1.0
OD1 A:ASP859 4.7 63.2 1.0
CA A:THR501 4.7 62.1 1.0
NZ A:LYS840 4.8 64.0 1.0

Fluorine binding site 4 out of 4 in 8op5

Go back to Fluorine Binding Sites List in 8op5
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:60.3
occ:1.00
 F4 A:ALF1402 0.0 60.3 1.0
AL A:ALF1402 1.8 68.6 1.0
O3B A:ADP1401 2.2 79.5 1.0
N A:GLY741 2.5 46.4 1.0
F1 A:ALF1402 2.5 55.1 1.0
F2 A:ALF1402 2.5 71.1 1.0
OG1 A:THR740 3.2 64.1 1.0
C A:THR740 3.3 45.5 1.0
CA A:THR740 3.3 36.0 1.0
CA A:GLY741 3.4 50.3 1.0
PB A:ADP1401 3.4 77.9 1.0
F3 A:ALF1402 3.6 72.6 1.0
OD1 A:ASP499 3.6 65.6 1.0
O2B A:ADP1401 3.6 71.8 1.0
CB A:THR740 3.7 57.8 1.0
NZ A:LYS840 3.9 64.0 1.0
C A:GLY741 4.2 45.6 1.0
N A:ASP742 4.2 43.8 1.0
O2A A:ADP1401 4.2 81.2 1.0
O3A A:ADP1401 4.3 77.4 1.0
CG A:ASP499 4.4 53.5 1.0
O A:THR740 4.4 63.8 1.0
OD2 A:ASP499 4.4 61.2 1.0
O A:ILE739 4.6 48.5 1.0
O1B A:ADP1401 4.6 73.3 1.0
N A:THR740 4.6 32.4 1.0
CE A:LYS840 4.9 61.8 1.0
N A:LYS500 4.9 41.0 1.0
PA A:ADP1401 5.0 86.6 1.0

Reference:

P.Li, P.Gourdon. Cryo-Em Structural Insights Into P5A-Atpase CTSPF1 To Be Published.
Page generated: Thu Oct 31 19:53:07 2024

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