Fluorine in PDB 8op5: Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)
Other elements in 8op5:
The structure of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)
(pdb code 8op5). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound), PDB code: 8op5:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 8op5
Go back to
Fluorine Binding Sites List in 8op5
Fluorine binding site 1 out
of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1402
b:55.1
occ:1.00
|
F1
|
A:ALF1402
|
0.0
|
55.1
|
1.0
|
AL
|
A:ALF1402
|
1.8
|
68.6
|
1.0
|
O2B
|
A:ADP1401
|
2.5
|
71.8
|
1.0
|
F4
|
A:ALF1402
|
2.5
|
60.3
|
1.0
|
F3
|
A:ALF1402
|
2.5
|
72.6
|
1.0
|
O3B
|
A:ADP1401
|
3.0
|
79.5
|
1.0
|
N
|
A:THR501
|
3.1
|
58.2
|
1.0
|
PB
|
A:ADP1401
|
3.1
|
77.9
|
1.0
|
CB
|
A:THR501
|
3.2
|
60.6
|
1.0
|
F2
|
A:ALF1402
|
3.6
|
71.1
|
1.0
|
OG1
|
A:THR501
|
3.6
|
61.3
|
1.0
|
CA
|
A:THR501
|
3.7
|
62.1
|
1.0
|
O
|
A:THR501
|
3.8
|
60.0
|
1.0
|
OD2
|
A:ASP499
|
3.9
|
61.2
|
1.0
|
O1B
|
A:ADP1401
|
4.0
|
73.3
|
1.0
|
O
|
A:HOH1501
|
4.1
|
73.8
|
1.0
|
OD1
|
A:ASP499
|
4.2
|
65.6
|
1.0
|
OG1
|
A:THR740
|
4.2
|
64.1
|
1.0
|
C
|
A:LYS500
|
4.2
|
60.2
|
1.0
|
CB
|
A:LYS500
|
4.2
|
44.6
|
1.0
|
C
|
A:THR501
|
4.2
|
58.9
|
1.0
|
N
|
A:LYS500
|
4.2
|
41.0
|
1.0
|
CG
|
A:ASP499
|
4.3
|
53.5
|
1.0
|
MG
|
A:MG1404
|
4.3
|
72.1
|
1.0
|
CA
|
A:LYS500
|
4.4
|
45.4
|
1.0
|
CG2
|
A:THR501
|
4.5
|
61.8
|
1.0
|
O3A
|
A:ADP1401
|
4.5
|
77.4
|
1.0
|
N
|
A:GLY741
|
4.7
|
46.4
|
1.0
|
NH2
|
A:ARG674
|
4.9
|
63.3
|
1.0
|
CB
|
A:THR740
|
4.9
|
57.8
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 8op5
Go back to
Fluorine Binding Sites List in 8op5
Fluorine binding site 2 out
of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1402
b:71.1
occ:1.00
|
F2
|
A:ALF1402
|
0.0
|
71.1
|
1.0
|
AL
|
A:ALF1402
|
1.8
|
68.6
|
1.0
|
NZ
|
A:LYS840
|
2.4
|
64.0
|
1.0
|
F3
|
A:ALF1402
|
2.5
|
72.6
|
1.0
|
F4
|
A:ALF1402
|
2.5
|
60.3
|
1.0
|
OD1
|
A:ASP499
|
2.9
|
65.6
|
1.0
|
OD2
|
A:ASP499
|
3.1
|
61.2
|
1.0
|
CG
|
A:ASP499
|
3.4
|
53.5
|
1.0
|
F1
|
A:ALF1402
|
3.6
|
55.1
|
1.0
|
O3B
|
A:ADP1401
|
3.6
|
79.5
|
1.0
|
CE
|
A:LYS840
|
3.7
|
61.8
|
1.0
|
MG
|
A:MG1404
|
3.8
|
72.1
|
1.0
|
CB
|
A:ASN862
|
3.9
|
69.8
|
1.0
|
OD1
|
A:ASP863
|
3.9
|
75.5
|
1.0
|
O2B
|
A:ADP1401
|
3.9
|
71.8
|
1.0
|
ND2
|
A:ASN862
|
4.1
|
81.8
|
1.0
|
CG
|
A:ASN862
|
4.1
|
80.0
|
1.0
|
OD2
|
A:ASP863
|
4.3
|
77.1
|
1.0
|
PB
|
A:ADP1401
|
4.3
|
77.9
|
1.0
|
CG
|
A:ASP863
|
4.5
|
76.0
|
1.0
|
O3A
|
A:ADP1401
|
4.5
|
77.4
|
1.0
|
N
|
A:GLY741
|
4.5
|
46.4
|
1.0
|
O
|
A:HOH1501
|
4.6
|
73.8
|
1.0
|
O
|
A:ILE739
|
4.7
|
48.5
|
1.0
|
O2A
|
A:ADP1401
|
4.8
|
81.2
|
1.0
|
OD1
|
A:ASN862
|
4.8
|
84.8
|
1.0
|
CA
|
A:THR740
|
4.9
|
36.0
|
1.0
|
CD
|
A:LYS840
|
4.9
|
54.6
|
1.0
|
CB
|
A:ASP499
|
4.9
|
40.1
|
1.0
|
C
|
A:THR740
|
5.0
|
45.5
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 8op5
Go back to
Fluorine Binding Sites List in 8op5
Fluorine binding site 3 out
of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1402
b:72.6
occ:1.00
|
F3
|
A:ALF1402
|
0.0
|
72.6
|
1.0
|
AL
|
A:ALF1402
|
1.8
|
68.6
|
1.0
|
MG
|
A:MG1404
|
2.0
|
72.1
|
1.0
|
O
|
A:HOH1501
|
2.3
|
73.8
|
1.0
|
OD2
|
A:ASP499
|
2.4
|
61.2
|
1.0
|
F2
|
A:ALF1402
|
2.5
|
71.1
|
1.0
|
F1
|
A:ALF1402
|
2.5
|
55.1
|
1.0
|
O2B
|
A:ADP1401
|
2.9
|
71.8
|
1.0
|
CG
|
A:ASP499
|
3.3
|
53.5
|
1.0
|
O
|
A:THR501
|
3.4
|
60.0
|
1.0
|
F4
|
A:ALF1402
|
3.6
|
60.3
|
1.0
|
OD1
|
A:ASP499
|
3.6
|
65.6
|
1.0
|
PB
|
A:ADP1401
|
4.0
|
77.9
|
1.0
|
O3B
|
A:ADP1401
|
4.1
|
79.5
|
1.0
|
C
|
A:THR501
|
4.4
|
58.9
|
1.0
|
N
|
A:THR501
|
4.4
|
58.2
|
1.0
|
OD2
|
A:ASP863
|
4.5
|
77.1
|
1.0
|
CB
|
A:THR501
|
4.6
|
60.6
|
1.0
|
MG
|
A:MG1403
|
4.6
|
65.7
|
1.0
|
O3A
|
A:ADP1401
|
4.6
|
77.4
|
1.0
|
CB
|
A:ASP499
|
4.6
|
40.1
|
1.0
|
OD1
|
A:ASP859
|
4.7
|
63.2
|
1.0
|
CA
|
A:THR501
|
4.7
|
62.1
|
1.0
|
NZ
|
A:LYS840
|
4.8
|
64.0
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 8op5
Go back to
Fluorine Binding Sites List in 8op5
Fluorine binding site 4 out
of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1402
b:60.3
occ:1.00
|
F4
|
A:ALF1402
|
0.0
|
60.3
|
1.0
|
AL
|
A:ALF1402
|
1.8
|
68.6
|
1.0
|
O3B
|
A:ADP1401
|
2.2
|
79.5
|
1.0
|
N
|
A:GLY741
|
2.5
|
46.4
|
1.0
|
F1
|
A:ALF1402
|
2.5
|
55.1
|
1.0
|
F2
|
A:ALF1402
|
2.5
|
71.1
|
1.0
|
OG1
|
A:THR740
|
3.2
|
64.1
|
1.0
|
C
|
A:THR740
|
3.3
|
45.5
|
1.0
|
CA
|
A:THR740
|
3.3
|
36.0
|
1.0
|
CA
|
A:GLY741
|
3.4
|
50.3
|
1.0
|
PB
|
A:ADP1401
|
3.4
|
77.9
|
1.0
|
F3
|
A:ALF1402
|
3.6
|
72.6
|
1.0
|
OD1
|
A:ASP499
|
3.6
|
65.6
|
1.0
|
O2B
|
A:ADP1401
|
3.6
|
71.8
|
1.0
|
CB
|
A:THR740
|
3.7
|
57.8
|
1.0
|
NZ
|
A:LYS840
|
3.9
|
64.0
|
1.0
|
C
|
A:GLY741
|
4.2
|
45.6
|
1.0
|
N
|
A:ASP742
|
4.2
|
43.8
|
1.0
|
O2A
|
A:ADP1401
|
4.2
|
81.2
|
1.0
|
O3A
|
A:ADP1401
|
4.3
|
77.4
|
1.0
|
CG
|
A:ASP499
|
4.4
|
53.5
|
1.0
|
O
|
A:THR740
|
4.4
|
63.8
|
1.0
|
OD2
|
A:ASP499
|
4.4
|
61.2
|
1.0
|
O
|
A:ILE739
|
4.6
|
48.5
|
1.0
|
O1B
|
A:ADP1401
|
4.6
|
73.3
|
1.0
|
N
|
A:THR740
|
4.6
|
32.4
|
1.0
|
CE
|
A:LYS840
|
4.9
|
61.8
|
1.0
|
N
|
A:LYS500
|
4.9
|
41.0
|
1.0
|
PA
|
A:ADP1401
|
5.0
|
86.6
|
1.0
|
|
Reference:
P.Li,
P.Gourdon.
Cryo-Em Structural Insights Into P5A-Atpase CTSPF1 To Be Published.
Page generated: Thu Oct 31 19:53:07 2024
|