Fluorine in PDB 8ox6: Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation

Enzymatic activity of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation

All present enzymatic activity of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation:
7.6.2.1;

Other elements in 8ox6:

The structure of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation (pdb code 8ox6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation, PDB code: 8ox6:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8ox6

Go back to Fluorine Binding Sites List in 8ox6
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:90.5
occ:1.00
 F1 A:ALF1202 0.0 90.5 1.0
AL A:ALF1202 1.8 90.5 1.0
F4 A:ALF1202 2.5 90.5 1.0
F3 A:ALF1202 2.5 90.5 1.0
OG1 A:THR732 2.7 92.1 1.0
NZ A:LYS873 2.8 86.1 1.0
OD1 A:ASP454 3.0 82.7 1.0
ND2 A:ASN896 3.2 84.0 1.0
CB A:THR732 3.3 92.1 1.0
CE A:LYS873 3.4 86.1 1.0
CA A:THR732 3.5 92.1 1.0
F2 A:ALF1202 3.6 90.5 1.0
CG A:ASP454 3.6 82.7 1.0
O A:LEU731 3.9 86.9 1.0
OD2 A:ASP454 3.9 82.7 1.0
N A:GLY733 4.4 100.3 1.0
C A:THR732 4.5 92.1 1.0
CG A:ASN896 4.5 84.0 1.0
OD2 A:ASP897 4.5 78.8 1.0
N A:THR732 4.6 92.1 1.0
CB A:ASP454 4.7 82.7 1.0
C A:LEU731 4.7 86.9 1.0
CG2 A:THR732 4.8 92.1 1.0
CD A:LYS873 4.9 86.1 1.0

Fluorine binding site 2 out of 4 in 8ox6

Go back to Fluorine Binding Sites List in 8ox6
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:90.5
occ:1.00
 F2 A:ALF1202 0.0 90.5 1.0
AL A:ALF1202 1.8 90.5 1.0
OD2 A:ASP454 2.1 82.7 1.0
MG A:MG1201 2.2 83.8 1.0
F4 A:ALF1202 2.5 90.5 1.0
F3 A:ALF1202 2.6 90.5 1.0
OE2 A:GLU914 2.6 84.2 1.0
O A:THR456 2.8 85.3 1.0
CG A:ASP454 2.9 82.7 1.0
OD1 A:ASP454 3.0 82.7 1.0
CB A:THR456 3.5 85.3 1.0
ND2 A:ASN896 3.5 84.0 1.0
CD A:GLU914 3.5 84.2 1.0
F1 A:ALF1202 3.6 90.5 1.0
OE1 A:GLU914 3.7 84.2 1.0
C A:THR456 3.7 85.3 1.0
CA A:THR456 3.9 85.3 1.0
N A:THR456 4.0 85.3 1.0
OD1 A:ASP897 4.2 78.8 1.0
CG2 A:THR456 4.2 85.3 1.0
OD1 A:ASN896 4.3 84.0 1.0
OD1 A:ASP893 4.3 77.0 1.0
CG A:ASN896 4.3 84.0 1.0
OG1 A:THR732 4.3 92.1 1.0
CB A:ASP454 4.3 82.7 1.0
OG1 A:THR456 4.4 85.3 1.0
O A:ASP893 4.5 77.0 1.0
CG A:GLU914 4.9 84.2 1.0
CG A:ASP897 5.0 78.8 1.0
N A:GLY457 5.0 79.7 1.0
NZ A:LYS873 5.0 86.1 1.0

Fluorine binding site 3 out of 4 in 8ox6

Go back to Fluorine Binding Sites List in 8ox6
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:90.5
occ:1.00
 F3 A:ALF1202 0.0 90.5 1.0
AL A:ALF1202 1.8 90.5 1.0
ND2 A:ASN896 2.3 84.0 1.0
OD2 A:ASP454 2.3 82.7 1.0
F1 A:ALF1202 2.5 90.5 1.0
F2 A:ALF1202 2.6 90.5 1.0
NZ A:LYS873 2.6 86.1 1.0
CG A:ASP454 2.6 82.7 1.0
OD2 A:ASP897 2.8 78.8 1.0
OD1 A:ASP897 2.9 78.8 1.0
OD1 A:ASP454 3.0 82.7 1.0
CG A:ASP897 3.1 78.8 1.0
CG A:ASN896 3.1 84.0 1.0
OD1 A:ASN896 3.4 84.0 1.0
MG A:MG1201 3.5 83.8 1.0
CB A:ASP454 3.6 82.7 1.0
F4 A:ALF1202 3.6 90.5 1.0
CE A:LYS873 4.0 86.1 1.0
O A:ASP893 4.2 77.0 1.0
CB A:ASN896 4.3 84.0 1.0
CB A:ASP897 4.3 78.8 1.0
N A:ASP897 4.4 78.8 1.0
OG1 A:THR732 4.4 92.1 1.0
C A:ASN896 4.6 84.0 1.0
CA A:ASP897 4.7 78.8 1.0
OE2 A:GLU914 4.7 84.2 1.0
CA A:ASP454 4.8 82.7 1.0
OE1 A:GLU914 4.8 84.2 1.0
O A:THR456 4.9 85.3 1.0

Fluorine binding site 4 out of 4 in 8ox6

Go back to Fluorine Binding Sites List in 8ox6
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of ATP8B1-CDC50A in E1P Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:90.5
occ:1.00
 F4 A:ALF1202 0.0 90.5 1.0
AL A:ALF1202 1.8 90.5 1.0
F1 A:ALF1202 2.5 90.5 1.0
OG1 A:THR732 2.5 92.1 1.0
F2 A:ALF1202 2.5 90.5 1.0
OD1 A:ASP454 3.0 82.7 1.0
CB A:THR456 3.6 85.3 1.0
F3 A:ALF1202 3.6 90.5 1.0
OG1 A:THR456 3.6 85.3 1.0
CG A:ASP454 3.8 82.7 1.0
OD2 A:ASP454 3.8 82.7 1.0
CB A:THR732 3.9 92.1 1.0
N A:THR456 4.0 85.3 1.0
ND2 A:ASN896 4.2 84.0 1.0
N A:GLY733 4.2 100.3 1.0
CA A:THR456 4.4 85.3 1.0
CA A:THR732 4.6 92.1 1.0
O A:THR456 4.6 85.3 1.0
OE2 A:GLU914 4.7 84.2 1.0
MG A:MG1201 4.7 83.8 1.0
CG2 A:THR456 4.7 85.3 1.0
N A:LYS455 4.9 86.3 1.0
CG2 A:THR732 4.9 92.1 1.0
C A:THR732 4.9 92.1 1.0
C A:THR456 5.0 85.3 1.0

Reference:

T.Dieudonne, F.Kummerer, M.J.Laursen, C.Stock, R.K.Flygaard, S.Khalid, G.Lenoir, J.A.Lyons, K.Lindorff-Larsen, P.Nissen. Activation and Substrate Specificity of the Human P4-Atpase ATP8B1. Nat Commun V. 14 7492 2023.
ISSN: ESSN 2041-1723
PubMed: 37980352
DOI: 10.1038/S41467-023-42828-9
Page generated: Fri Aug 2 21:18:50 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy