Fluorine in PDB 8p2r: Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid)
Enzymatic activity of Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid)
All present enzymatic activity of Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid):
1.1.1.21;
1.1.1.300;
1.1.1.372;
1.1.1.54;
Protein crystallography data
The structure of Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid), PDB code: 8p2r
was solved by
L.-S.Klee,
A.Heine,
G.Klebe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
21.63 /
1.25
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.335,
66.813,
49.298,
90,
92.1,
90
|
R / Rfree (%)
|
10.7 /
13.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid)
(pdb code 8p2r). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid), PDB code: 8p2r:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 8p2r
Go back to
Fluorine Binding Sites List in 8p2r
Fluorine binding site 1 out
of 2 in the Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid)
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F403
b:16.9
occ:0.25
|
F27
|
A:4G7403
|
0.0
|
16.9
|
0.2
|
F27
|
A:4G7403
|
0.2
|
12.7
|
0.8
|
C26
|
A:4G7403
|
1.3
|
11.3
|
0.8
|
C26
|
A:4G7403
|
1.4
|
16.4
|
0.2
|
C24
|
A:4G7403
|
2.2
|
12.3
|
0.8
|
C24
|
A:4G7403
|
2.3
|
16.7
|
0.2
|
C28
|
A:4G7403
|
2.3
|
16.0
|
0.2
|
C28
|
A:4G7403
|
2.4
|
10.0
|
0.8
|
HD1
|
A:TYR48
|
2.8
|
7.9
|
1.0
|
HG13
|
A:VAL47
|
2.9
|
8.2
|
1.0
|
HA
|
A:TYR48
|
3.1
|
7.5
|
1.0
|
HE1
|
A:TRP20
|
3.2
|
8.7
|
1.0
|
O
|
A:VAL47
|
3.2
|
6.8
|
1.0
|
HG22
|
A:VAL47
|
3.4
|
8.7
|
1.0
|
O
|
A:HOH895
|
3.4
|
14.9
|
1.0
|
HD1
|
A:TRP20
|
3.4
|
7.8
|
1.0
|
O
|
A:HOH720
|
3.5
|
17.5
|
1.0
|
C22
|
A:4G7403
|
3.5
|
12.5
|
0.8
|
NE1
|
A:TRP20
|
3.5
|
7.2
|
1.0
|
C30
|
A:4G7403
|
3.6
|
9.6
|
0.8
|
C30
|
A:4G7403
|
3.6
|
15.7
|
0.2
|
C22
|
A:4G7403
|
3.6
|
16.7
|
0.2
|
CD1
|
A:TYR48
|
3.6
|
6.6
|
1.0
|
CD1
|
A:TRP20
|
3.7
|
6.5
|
1.0
|
O
|
A:HOH568
|
3.7
|
10.1
|
1.0
|
C
|
A:VAL47
|
3.8
|
6.0
|
1.0
|
CG1
|
A:VAL47
|
3.9
|
6.8
|
1.0
|
HE1
|
A:TYR48
|
4.0
|
7.2
|
1.0
|
CA
|
A:TYR48
|
4.0
|
6.2
|
1.0
|
C21
|
A:4G7403
|
4.1
|
12.0
|
0.8
|
N
|
A:TYR48
|
4.1
|
5.7
|
1.0
|
C21
|
A:4G7403
|
4.1
|
16.6
|
0.2
|
CG2
|
A:VAL47
|
4.2
|
7.2
|
1.0
|
CE1
|
A:TYR48
|
4.2
|
6.0
|
1.0
|
HG11
|
A:VAL47
|
4.2
|
8.2
|
1.0
|
HG12
|
A:VAL47
|
4.4
|
8.2
|
1.0
|
HG21
|
A:VAL47
|
4.5
|
8.7
|
1.0
|
CB
|
A:VAL47
|
4.5
|
6.8
|
1.0
|
CE2
|
A:TRP20
|
4.6
|
7.0
|
1.0
|
O
|
A:HOH669
|
4.6
|
10.0
|
1.0
|
CG
|
A:TYR48
|
4.6
|
6.1
|
1.0
|
CA
|
A:VAL47
|
4.7
|
6.2
|
1.0
|
H
|
A:TYR48
|
4.8
|
6.8
|
1.0
|
O31
|
A:4G7403
|
4.8
|
14.6
|
0.2
|
O31
|
A:4G7403
|
4.8
|
8.9
|
0.8
|
CG
|
A:TRP20
|
4.8
|
6.4
|
1.0
|
CB
|
A:TYR48
|
4.8
|
6.4
|
1.0
|
O
|
A:HOH935
|
4.9
|
14.2
|
1.0
|
C
|
A:TYR48
|
4.9
|
6.3
|
1.0
|
HG23
|
A:VAL47
|
5.0
|
8.7
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 8p2r
Go back to
Fluorine Binding Sites List in 8p2r
Fluorine binding site 2 out
of 2 in the Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid)
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4- Fluorobenzoyl]Amino}Methyl)Benzoic Acid) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F403
b:12.7
occ:0.76
|
F27
|
A:4G7403
|
0.0
|
12.7
|
0.8
|
F27
|
A:4G7403
|
0.2
|
16.9
|
0.2
|
C26
|
A:4G7403
|
1.4
|
11.3
|
0.8
|
C26
|
A:4G7403
|
1.4
|
16.4
|
0.2
|
C28
|
A:4G7403
|
2.3
|
16.0
|
0.2
|
C28
|
A:4G7403
|
2.3
|
10.0
|
0.8
|
C24
|
A:4G7403
|
2.3
|
12.3
|
0.8
|
C24
|
A:4G7403
|
2.4
|
16.7
|
0.2
|
HD1
|
A:TYR48
|
2.6
|
7.9
|
1.0
|
HG13
|
A:VAL47
|
2.8
|
8.2
|
1.0
|
HA
|
A:TYR48
|
3.0
|
7.5
|
1.0
|
O
|
A:VAL47
|
3.2
|
6.8
|
1.0
|
HE1
|
A:TRP20
|
3.2
|
8.7
|
1.0
|
HD1
|
A:TRP20
|
3.3
|
7.8
|
1.0
|
HG22
|
A:VAL47
|
3.4
|
8.7
|
1.0
|
CD1
|
A:TYR48
|
3.5
|
6.6
|
1.0
|
NE1
|
A:TRP20
|
3.5
|
7.2
|
1.0
|
O
|
A:HOH895
|
3.5
|
14.9
|
1.0
|
O
|
A:HOH720
|
3.6
|
17.5
|
1.0
|
C30
|
A:4G7403
|
3.6
|
9.6
|
0.8
|
C30
|
A:4G7403
|
3.6
|
15.7
|
0.2
|
CD1
|
A:TRP20
|
3.6
|
6.5
|
1.0
|
C22
|
A:4G7403
|
3.6
|
12.5
|
0.8
|
C22
|
A:4G7403
|
3.7
|
16.7
|
0.2
|
C
|
A:VAL47
|
3.7
|
6.0
|
1.0
|
CG1
|
A:VAL47
|
3.8
|
6.8
|
1.0
|
HE1
|
A:TYR48
|
3.8
|
7.2
|
1.0
|
O
|
A:HOH568
|
3.8
|
10.1
|
1.0
|
CA
|
A:TYR48
|
3.9
|
6.2
|
1.0
|
N
|
A:TYR48
|
4.0
|
5.7
|
1.0
|
CE1
|
A:TYR48
|
4.1
|
6.0
|
1.0
|
C21
|
A:4G7403
|
4.1
|
12.0
|
0.8
|
C21
|
A:4G7403
|
4.2
|
16.6
|
0.2
|
HG11
|
A:VAL47
|
4.2
|
8.2
|
1.0
|
CG2
|
A:VAL47
|
4.2
|
7.2
|
1.0
|
HG12
|
A:VAL47
|
4.3
|
8.2
|
1.0
|
CB
|
A:VAL47
|
4.4
|
6.8
|
1.0
|
HG21
|
A:VAL47
|
4.4
|
8.7
|
1.0
|
CG
|
A:TYR48
|
4.5
|
6.1
|
1.0
|
CE2
|
A:TRP20
|
4.6
|
7.0
|
1.0
|
O
|
A:HOH669
|
4.6
|
10.0
|
1.0
|
H
|
A:TYR48
|
4.6
|
6.8
|
1.0
|
CA
|
A:VAL47
|
4.7
|
6.2
|
1.0
|
CB
|
A:TYR48
|
4.7
|
6.4
|
1.0
|
CG
|
A:TRP20
|
4.7
|
6.4
|
1.0
|
O31
|
A:4G7403
|
4.7
|
14.6
|
0.2
|
O31
|
A:4G7403
|
4.7
|
8.9
|
0.8
|
C
|
A:TYR48
|
4.9
|
6.3
|
1.0
|
HB3
|
A:TYR48
|
4.9
|
7.7
|
1.0
|
C32
|
A:4G7403
|
5.0
|
13.2
|
0.2
|
HG23
|
A:VAL47
|
5.0
|
8.7
|
1.0
|
|
Reference:
L.-S.Klee,
A.Heine,
G.Klebe,
F.Scheer.
Human Aldose Reductase Mutant A299G/L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid) To Be Published.
Page generated: Fri Aug 2 21:42:30 2024
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