Fluorine in PDB 8p4m: Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Enzymatic activity of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
All present enzymatic activity of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx:
5.6.1.7;
Other elements in 8p4m:
The structure of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
21;
Binding sites:
The binding sites of Fluorine atom in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
(pdb code 8p4m). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 21 binding sites of Fluorine where determined in the
Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx, PDB code: 8p4m:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 1 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1602
b:34.0
occ:1.00
|
F1
|
A:BEF1602
|
0.0
|
34.0
|
1.0
|
BE
|
A:BEF1602
|
1.5
|
34.0
|
1.0
|
MG
|
A:MG1601
|
2.0
|
32.5
|
1.0
|
O3B
|
A:ADP1600
|
2.4
|
43.1
|
1.0
|
O
|
A:HOH1705
|
2.5
|
30.0
|
1.0
|
F3
|
A:BEF1602
|
2.5
|
34.0
|
1.0
|
F2
|
A:BEF1602
|
2.5
|
34.0
|
1.0
|
O1B
|
A:ADP1600
|
2.6
|
43.1
|
1.0
|
OD1
|
A:ASP87
|
2.8
|
31.7
|
1.0
|
PB
|
A:ADP1600
|
2.8
|
43.1
|
1.0
|
O1A
|
A:ADP1600
|
2.9
|
43.1
|
1.0
|
O3A
|
A:ADP1600
|
3.2
|
43.1
|
1.0
|
OD1
|
A:ASP398
|
3.5
|
35.6
|
1.0
|
O
|
A:HOH1724
|
3.5
|
30.2
|
1.0
|
PA
|
A:ADP1600
|
3.6
|
43.1
|
1.0
|
O
|
A:HOH1710
|
3.8
|
30.1
|
1.0
|
O
|
A:HOH1701
|
3.8
|
26.8
|
1.0
|
CG
|
A:ASP87
|
3.9
|
31.7
|
1.0
|
N
|
A:GLY88
|
4.2
|
29.9
|
1.0
|
O2B
|
A:ADP1600
|
4.3
|
43.1
|
1.0
|
K
|
A:K1603
|
4.3
|
24.2
|
1.0
|
OD1
|
A:ASP52
|
4.5
|
30.7
|
1.0
|
OD2
|
A:ASP87
|
4.5
|
31.7
|
1.0
|
O2A
|
A:ADP1600
|
4.6
|
43.1
|
1.0
|
CG
|
A:ASP398
|
4.7
|
35.6
|
1.0
|
O5'
|
A:ADP1600
|
4.8
|
43.1
|
1.0
|
CA
|
A:ASP87
|
4.9
|
31.7
|
1.0
|
CA
|
A:GLY88
|
4.9
|
29.9
|
1.0
|
O
|
A:HOH1728
|
4.9
|
34.9
|
1.0
|
OG1
|
A:THR90
|
5.0
|
27.9
|
1.0
|
|
Fluorine binding site 2 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 2 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1602
b:34.0
occ:1.00
|
F2
|
A:BEF1602
|
0.0
|
34.0
|
1.0
|
BE
|
A:BEF1602
|
1.5
|
34.0
|
1.0
|
O
|
A:HOH1701
|
2.4
|
26.8
|
1.0
|
O3B
|
A:ADP1600
|
2.5
|
43.1
|
1.0
|
F3
|
A:BEF1602
|
2.5
|
34.0
|
1.0
|
F1
|
A:BEF1602
|
2.5
|
34.0
|
1.0
|
OG1
|
A:THR89
|
3.1
|
28.8
|
1.0
|
OD1
|
A:ASP52
|
3.3
|
30.7
|
1.0
|
OD1
|
A:ASP87
|
3.4
|
31.7
|
1.0
|
N
|
A:THR89
|
3.4
|
28.8
|
1.0
|
N
|
A:GLY88
|
3.5
|
29.9
|
1.0
|
OD1
|
A:ASP398
|
3.7
|
35.6
|
1.0
|
PB
|
A:ADP1600
|
3.8
|
43.1
|
1.0
|
CG2
|
A:THR89
|
3.8
|
28.8
|
1.0
|
CB
|
A:THR89
|
3.9
|
28.8
|
1.0
|
CA
|
A:ASP87
|
4.0
|
31.7
|
1.0
|
MG
|
A:MG1601
|
4.0
|
32.5
|
1.0
|
C
|
A:ASP87
|
4.1
|
31.7
|
1.0
|
O1B
|
A:ADP1600
|
4.1
|
43.1
|
1.0
|
CA
|
A:THR89
|
4.2
|
28.8
|
1.0
|
CA
|
A:GLY88
|
4.3
|
29.9
|
1.0
|
C
|
A:GLY88
|
4.4
|
29.9
|
1.0
|
CG
|
A:ASP87
|
4.5
|
31.7
|
1.0
|
CG
|
A:ASP52
|
4.5
|
30.7
|
1.0
|
N
|
A:THR90
|
4.5
|
27.9
|
1.0
|
N
|
A:GLY53
|
4.6
|
28.7
|
1.0
|
O3A
|
A:ADP1600
|
4.6
|
43.1
|
1.0
|
OG1
|
A:THR90
|
4.7
|
27.9
|
1.0
|
O
|
A:GLY86
|
4.8
|
30.5
|
1.0
|
O
|
A:HOH1705
|
4.8
|
30.0
|
1.0
|
CB
|
A:ASP87
|
4.9
|
31.7
|
1.0
|
O2B
|
A:ADP1600
|
4.9
|
43.1
|
1.0
|
CG
|
A:ASP398
|
4.9
|
35.6
|
1.0
|
N
|
A:ASP87
|
4.9
|
31.7
|
1.0
|
C
|
A:THR89
|
4.9
|
28.8
|
1.0
|
|
Fluorine binding site 3 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 3 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1602
b:34.0
occ:1.00
|
F3
|
A:BEF1602
|
0.0
|
34.0
|
1.0
|
BE
|
A:BEF1602
|
1.5
|
34.0
|
1.0
|
O3B
|
A:ADP1600
|
2.3
|
43.1
|
1.0
|
F2
|
A:BEF1602
|
2.5
|
34.0
|
1.0
|
F1
|
A:BEF1602
|
2.5
|
34.0
|
1.0
|
K
|
A:K1603
|
2.8
|
24.2
|
1.0
|
OG1
|
A:THR90
|
3.0
|
27.9
|
1.0
|
N
|
A:GLY53
|
3.2
|
28.7
|
1.0
|
O3A
|
A:ADP1600
|
3.3
|
43.1
|
1.0
|
OD1
|
A:ASP52
|
3.4
|
30.7
|
1.0
|
PB
|
A:ADP1600
|
3.5
|
43.1
|
1.0
|
O
|
A:HOH1724
|
3.6
|
30.2
|
1.0
|
OG1
|
A:THR89
|
3.7
|
28.8
|
1.0
|
CA
|
A:ASP52
|
4.0
|
30.7
|
1.0
|
O
|
A:LYS51
|
4.0
|
26.5
|
1.0
|
C
|
A:ASP52
|
4.1
|
30.7
|
1.0
|
CA
|
A:GLY53
|
4.1
|
28.7
|
1.0
|
CB
|
A:THR90
|
4.1
|
27.9
|
1.0
|
O
|
A:HOH1701
|
4.2
|
26.8
|
1.0
|
O1B
|
A:ADP1600
|
4.2
|
43.1
|
1.0
|
N
|
A:THR90
|
4.3
|
27.9
|
1.0
|
PA
|
A:ADP1600
|
4.3
|
43.1
|
1.0
|
O1A
|
A:ADP1600
|
4.4
|
43.1
|
1.0
|
MG
|
A:MG1601
|
4.4
|
32.5
|
1.0
|
CG
|
A:ASP52
|
4.5
|
30.7
|
1.0
|
O2B
|
A:ADP1600
|
4.6
|
43.1
|
1.0
|
O
|
A:HOH1705
|
4.6
|
30.0
|
1.0
|
O2A
|
A:ADP1600
|
4.7
|
43.1
|
1.0
|
OD1
|
A:ASP398
|
4.8
|
35.6
|
1.0
|
N
|
A:THR89
|
4.8
|
28.8
|
1.0
|
C
|
A:LYS51
|
4.8
|
26.5
|
1.0
|
CB
|
A:ASP52
|
4.8
|
30.7
|
1.0
|
CA
|
A:THR90
|
4.9
|
27.9
|
1.0
|
N
|
A:ASP52
|
4.9
|
30.7
|
1.0
|
OD1
|
A:ASP87
|
4.9
|
31.7
|
1.0
|
CB
|
A:THR89
|
5.0
|
28.8
|
1.0
|
|
Fluorine binding site 4 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 4 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1602
b:34.7
occ:1.00
|
F1
|
B:BEF1602
|
0.0
|
34.7
|
1.0
|
BE
|
B:BEF1602
|
1.5
|
34.7
|
1.0
|
MG
|
B:MG1601
|
2.0
|
32.5
|
1.0
|
O3B
|
B:ADP1600
|
2.4
|
43.1
|
1.0
|
O
|
B:HOH1706
|
2.5
|
29.7
|
1.0
|
F2
|
B:BEF1602
|
2.5
|
34.7
|
1.0
|
F3
|
B:BEF1602
|
2.5
|
34.7
|
1.0
|
O1B
|
B:ADP1600
|
2.7
|
43.1
|
1.0
|
O1A
|
B:ADP1600
|
2.8
|
43.1
|
1.0
|
PB
|
B:ADP1600
|
2.9
|
43.1
|
1.0
|
OD1
|
B:ASP87
|
3.0
|
32.0
|
1.0
|
O3A
|
B:ADP1600
|
3.3
|
43.1
|
1.0
|
O
|
B:HOH1718
|
3.5
|
29.7
|
1.0
|
PA
|
B:ADP1600
|
3.5
|
43.1
|
1.0
|
O
|
B:HOH1709
|
3.8
|
26.9
|
1.0
|
O
|
B:HOH1710
|
3.9
|
31.0
|
1.0
|
CG
|
B:ASP87
|
4.0
|
32.0
|
1.0
|
N
|
B:GLY88
|
4.2
|
29.2
|
1.0
|
K
|
B:K1603
|
4.3
|
24.3
|
1.0
|
O2A
|
B:ADP1600
|
4.3
|
43.1
|
1.0
|
O2B
|
B:ADP1600
|
4.4
|
43.1
|
1.0
|
OD2
|
B:ASP87
|
4.4
|
32.0
|
1.0
|
OD1
|
B:ASP52
|
4.5
|
29.5
|
1.0
|
OD2
|
B:ASP398
|
4.6
|
36.5
|
1.0
|
O5'
|
B:ADP1600
|
4.9
|
43.1
|
1.0
|
O
|
B:HOH1730
|
4.9
|
32.2
|
1.0
|
OG1
|
B:THR90
|
4.9
|
27.9
|
1.0
|
CA
|
B:ASP87
|
4.9
|
32.0
|
1.0
|
CA
|
B:GLY88
|
4.9
|
29.2
|
1.0
|
CG
|
B:ASP398
|
5.0
|
36.5
|
1.0
|
|
Fluorine binding site 5 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 5 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1602
b:34.7
occ:1.00
|
F2
|
B:BEF1602
|
0.0
|
34.7
|
1.0
|
BE
|
B:BEF1602
|
1.5
|
34.7
|
1.0
|
O3B
|
B:ADP1600
|
2.5
|
43.1
|
1.0
|
F3
|
B:BEF1602
|
2.5
|
34.7
|
1.0
|
F1
|
B:BEF1602
|
2.5
|
34.7
|
1.0
|
O
|
B:HOH1709
|
2.5
|
26.9
|
1.0
|
OG1
|
B:THR89
|
3.1
|
28.4
|
1.0
|
N
|
B:GLY88
|
3.4
|
29.2
|
1.0
|
N
|
B:THR89
|
3.4
|
28.4
|
1.0
|
OD1
|
B:ASP87
|
3.5
|
32.0
|
1.0
|
PB
|
B:ADP1600
|
3.8
|
43.1
|
1.0
|
OD1
|
B:ASP52
|
3.8
|
29.5
|
1.0
|
CA
|
B:ASP87
|
3.9
|
32.0
|
1.0
|
CG2
|
B:THR89
|
3.9
|
28.4
|
1.0
|
CB
|
B:THR89
|
3.9
|
28.4
|
1.0
|
MG
|
B:MG1601
|
4.0
|
32.5
|
1.0
|
C
|
B:ASP87
|
4.0
|
32.0
|
1.0
|
O1B
|
B:ADP1600
|
4.1
|
43.1
|
1.0
|
CA
|
B:GLY88
|
4.2
|
29.2
|
1.0
|
CA
|
B:THR89
|
4.2
|
28.4
|
1.0
|
C
|
B:GLY88
|
4.3
|
29.2
|
1.0
|
CG
|
B:ASP87
|
4.4
|
32.0
|
1.0
|
CG
|
B:ASP52
|
4.4
|
29.5
|
1.0
|
N
|
B:THR90
|
4.5
|
27.9
|
1.0
|
OD2
|
B:ASP52
|
4.6
|
29.5
|
1.0
|
N
|
B:GLY53
|
4.7
|
26.7
|
1.0
|
O3A
|
B:ADP1600
|
4.7
|
43.1
|
1.0
|
OG1
|
B:THR90
|
4.7
|
27.9
|
1.0
|
CB
|
B:ASP87
|
4.8
|
32.0
|
1.0
|
O
|
B:HOH1706
|
4.8
|
29.7
|
1.0
|
O
|
B:GLY86
|
4.8
|
30.4
|
1.0
|
N
|
B:ASP87
|
4.8
|
32.0
|
1.0
|
O2B
|
B:ADP1600
|
4.8
|
43.1
|
1.0
|
C
|
B:THR89
|
4.9
|
28.4
|
1.0
|
OD2
|
B:ASP398
|
5.0
|
36.5
|
1.0
|
O
|
B:ASP87
|
5.0
|
32.0
|
1.0
|
|
Fluorine binding site 6 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 6 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1602
b:34.7
occ:1.00
|
F3
|
B:BEF1602
|
0.0
|
34.7
|
1.0
|
BE
|
B:BEF1602
|
1.5
|
34.7
|
1.0
|
O3B
|
B:ADP1600
|
2.3
|
43.1
|
1.0
|
F2
|
B:BEF1602
|
2.5
|
34.7
|
1.0
|
F1
|
B:BEF1602
|
2.5
|
34.7
|
1.0
|
K
|
B:K1603
|
2.9
|
24.3
|
1.0
|
OG1
|
B:THR90
|
3.0
|
27.9
|
1.0
|
N
|
B:GLY53
|
3.3
|
26.7
|
1.0
|
O3A
|
B:ADP1600
|
3.5
|
43.1
|
1.0
|
O
|
B:HOH1718
|
3.5
|
29.7
|
1.0
|
PB
|
B:ADP1600
|
3.5
|
43.1
|
1.0
|
OG1
|
B:THR89
|
3.6
|
28.4
|
1.0
|
OD1
|
B:ASP52
|
3.8
|
29.5
|
1.0
|
CA
|
B:ASP52
|
3.9
|
29.5
|
1.0
|
O
|
B:LYS51
|
4.0
|
25.8
|
1.0
|
C
|
B:ASP52
|
4.1
|
29.5
|
1.0
|
CB
|
B:THR90
|
4.1
|
27.9
|
1.0
|
CA
|
B:GLY53
|
4.1
|
26.7
|
1.0
|
N
|
B:THR90
|
4.2
|
27.9
|
1.0
|
O
|
B:HOH1709
|
4.2
|
26.9
|
1.0
|
CG
|
B:ASP52
|
4.3
|
29.5
|
1.0
|
O1B
|
B:ADP1600
|
4.3
|
43.1
|
1.0
|
PA
|
B:ADP1600
|
4.3
|
43.1
|
1.0
|
O1A
|
B:ADP1600
|
4.4
|
43.1
|
1.0
|
MG
|
B:MG1601
|
4.5
|
32.5
|
1.0
|
O2A
|
B:ADP1600
|
4.5
|
43.1
|
1.0
|
O2B
|
B:ADP1600
|
4.6
|
43.1
|
1.0
|
O
|
B:HOH1706
|
4.7
|
29.7
|
1.0
|
N
|
B:THR89
|
4.7
|
28.4
|
1.0
|
CB
|
B:ASP52
|
4.8
|
29.5
|
1.0
|
CA
|
B:THR90
|
4.8
|
27.9
|
1.0
|
C
|
B:LYS51
|
4.9
|
25.8
|
1.0
|
OD2
|
B:ASP52
|
4.9
|
29.5
|
1.0
|
CB
|
B:THR89
|
4.9
|
28.4
|
1.0
|
N
|
B:ASP52
|
4.9
|
29.5
|
1.0
|
|
Fluorine binding site 7 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 7 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1602
b:33.1
occ:1.00
|
F1
|
C:BEF1602
|
0.0
|
33.1
|
1.0
|
BE
|
C:BEF1602
|
1.5
|
33.1
|
1.0
|
MG
|
C:MG1601
|
2.0
|
32.8
|
1.0
|
O3B
|
C:ADP1600
|
2.2
|
43.1
|
1.0
|
F3
|
C:BEF1602
|
2.5
|
33.1
|
1.0
|
F2
|
C:BEF1602
|
2.5
|
33.1
|
1.0
|
O1B
|
C:ADP1600
|
2.7
|
43.1
|
1.0
|
O
|
C:HOH1706
|
2.7
|
30.3
|
1.0
|
PB
|
C:ADP1600
|
2.8
|
43.1
|
1.0
|
OD1
|
C:ASP87
|
2.8
|
32.7
|
1.0
|
O1A
|
C:ADP1600
|
2.9
|
43.1
|
1.0
|
O3A
|
C:ADP1600
|
3.2
|
43.1
|
1.0
|
O
|
C:HOH1727
|
3.5
|
27.5
|
1.0
|
PA
|
C:ADP1600
|
3.6
|
43.1
|
1.0
|
O
|
C:HOH1707
|
3.8
|
26.7
|
1.0
|
O
|
C:HOH1711
|
3.9
|
32.3
|
1.0
|
CG
|
C:ASP87
|
3.9
|
32.7
|
1.0
|
N
|
C:GLY88
|
4.1
|
29.5
|
1.0
|
O2B
|
C:ADP1600
|
4.2
|
43.1
|
1.0
|
K
|
C:K1603
|
4.3
|
25.2
|
1.0
|
O2A
|
C:ADP1600
|
4.4
|
43.1
|
1.0
|
OD2
|
C:ASP87
|
4.5
|
32.7
|
1.0
|
OD1
|
C:ASP52
|
4.6
|
29.7
|
1.0
|
OD2
|
C:ASP398
|
4.7
|
38.2
|
1.0
|
CA
|
C:GLY88
|
4.8
|
29.5
|
1.0
|
CA
|
C:ASP87
|
4.8
|
32.7
|
1.0
|
OG1
|
C:THR90
|
4.8
|
27.6
|
1.0
|
O5'
|
C:ADP1600
|
4.9
|
43.1
|
1.0
|
N
|
C:THR89
|
4.9
|
29.0
|
1.0
|
C
|
C:ASP87
|
5.0
|
32.7
|
1.0
|
|
Fluorine binding site 8 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 8 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1602
b:33.1
occ:1.00
|
F2
|
C:BEF1602
|
0.0
|
33.1
|
1.0
|
BE
|
C:BEF1602
|
1.5
|
33.1
|
1.0
|
O
|
C:HOH1707
|
2.3
|
26.7
|
1.0
|
F3
|
C:BEF1602
|
2.5
|
33.1
|
1.0
|
F1
|
C:BEF1602
|
2.5
|
33.1
|
1.0
|
O3B
|
C:ADP1600
|
2.6
|
43.1
|
1.0
|
OG1
|
C:THR89
|
3.1
|
29.0
|
1.0
|
OD1
|
C:ASP52
|
3.4
|
29.7
|
1.0
|
OD1
|
C:ASP87
|
3.5
|
32.7
|
1.0
|
N
|
C:THR89
|
3.6
|
29.0
|
1.0
|
N
|
C:GLY88
|
3.6
|
29.5
|
1.0
|
CG2
|
C:THR89
|
3.8
|
29.0
|
1.0
|
CB
|
C:THR89
|
3.9
|
29.0
|
1.0
|
PB
|
C:ADP1600
|
4.0
|
43.1
|
1.0
|
CA
|
C:ASP87
|
4.0
|
32.7
|
1.0
|
MG
|
C:MG1601
|
4.1
|
32.8
|
1.0
|
C
|
C:ASP87
|
4.2
|
32.7
|
1.0
|
CG
|
C:ASP52
|
4.3
|
29.7
|
1.0
|
CA
|
C:THR89
|
4.3
|
29.0
|
1.0
|
O1B
|
C:ADP1600
|
4.3
|
43.1
|
1.0
|
N
|
C:GLY53
|
4.5
|
27.6
|
1.0
|
CA
|
C:GLY88
|
4.5
|
29.5
|
1.0
|
C
|
C:GLY88
|
4.5
|
29.5
|
1.0
|
CG
|
C:ASP87
|
4.6
|
32.7
|
1.0
|
N
|
C:THR90
|
4.6
|
27.6
|
1.0
|
OD2
|
C:ASP52
|
4.7
|
29.7
|
1.0
|
O
|
C:GLY86
|
4.7
|
31.3
|
1.0
|
OG1
|
C:THR90
|
4.8
|
27.6
|
1.0
|
O3A
|
C:ADP1600
|
4.8
|
43.1
|
1.0
|
OD2
|
C:ASP398
|
4.8
|
38.2
|
1.0
|
OD1
|
C:ASP398
|
4.9
|
38.2
|
1.0
|
O
|
C:HOH1706
|
4.9
|
30.3
|
1.0
|
N
|
C:ASP87
|
4.9
|
32.7
|
1.0
|
CB
|
C:ASP87
|
4.9
|
32.7
|
1.0
|
|
Fluorine binding site 9 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 9 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1602
b:33.1
occ:1.00
|
F3
|
C:BEF1602
|
0.0
|
33.1
|
1.0
|
BE
|
C:BEF1602
|
1.5
|
33.1
|
1.0
|
O3B
|
C:ADP1600
|
2.3
|
43.1
|
1.0
|
F2
|
C:BEF1602
|
2.5
|
33.1
|
1.0
|
F1
|
C:BEF1602
|
2.5
|
33.1
|
1.0
|
K
|
C:K1603
|
2.9
|
25.2
|
1.0
|
OG1
|
C:THR90
|
2.9
|
27.6
|
1.0
|
N
|
C:GLY53
|
3.2
|
27.6
|
1.0
|
O3A
|
C:ADP1600
|
3.5
|
43.1
|
1.0
|
PB
|
C:ADP1600
|
3.5
|
43.1
|
1.0
|
O
|
C:HOH1727
|
3.5
|
27.5
|
1.0
|
OG1
|
C:THR89
|
3.7
|
29.0
|
1.0
|
OD1
|
C:ASP52
|
3.8
|
29.7
|
1.0
|
CA
|
C:ASP52
|
3.9
|
29.7
|
1.0
|
O
|
C:LYS51
|
4.0
|
26.1
|
1.0
|
CA
|
C:GLY53
|
4.0
|
27.6
|
1.0
|
C
|
C:ASP52
|
4.0
|
29.7
|
1.0
|
CB
|
C:THR90
|
4.1
|
27.6
|
1.0
|
N
|
C:THR90
|
4.2
|
27.6
|
1.0
|
O
|
C:HOH1707
|
4.2
|
26.7
|
1.0
|
PA
|
C:ADP1600
|
4.4
|
43.1
|
1.0
|
O1B
|
C:ADP1600
|
4.4
|
43.1
|
1.0
|
CG
|
C:ASP52
|
4.4
|
29.7
|
1.0
|
MG
|
C:MG1601
|
4.5
|
32.8
|
1.0
|
O1A
|
C:ADP1600
|
4.5
|
43.1
|
1.0
|
O2A
|
C:ADP1600
|
4.6
|
43.1
|
1.0
|
O2B
|
C:ADP1600
|
4.6
|
43.1
|
1.0
|
N
|
C:THR89
|
4.7
|
29.0
|
1.0
|
CB
|
C:ASP52
|
4.8
|
29.7
|
1.0
|
CA
|
C:THR90
|
4.8
|
27.6
|
1.0
|
O
|
C:HOH1706
|
4.8
|
30.3
|
1.0
|
C
|
C:LYS51
|
4.9
|
26.1
|
1.0
|
N
|
C:ASP52
|
4.9
|
29.7
|
1.0
|
CB
|
C:THR89
|
4.9
|
29.0
|
1.0
|
|
Fluorine binding site 10 out
of 21 in 8p4m
Go back to
Fluorine Binding Sites List in 8p4m
Fluorine binding site 10 out
of 21 in the Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Cryoem Structure of A C7-Symmetrical GROEL7-GROES7 Cage in Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1602
b:33.3
occ:1.00
|
F1
|
D:BEF1602
|
0.0
|
33.3
|
1.0
|
BE
|
D:BEF1602
|
1.5
|
33.3
|
1.0
|
MG
|
D:MG1601
|
1.9
|
32.7
|
1.0
|
O3B
|
D:ADP1600
|
2.4
|
43.1
|
1.0
|
F2
|
D:BEF1602
|
2.5
|
33.3
|
1.0
|
F3
|
D:BEF1602
|
2.5
|
33.3
|
1.0
|
O
|
D:HOH1705
|
2.7
|
30.4
|
1.0
|
OD1
|
D:ASP87
|
2.8
|
31.6
|
1.0
|
O1B
|
D:ADP1600
|
2.8
|
43.1
|
1.0
|
O1A
|
D:ADP1600
|
2.9
|
43.1
|
1.0
|
PB
|
D:ADP1600
|
2.9
|
43.1
|
1.0
|
O3A
|
D:ADP1600
|
3.2
|
43.1
|
1.0
|
O
|
D:HOH1724
|
3.4
|
29.4
|
1.0
|
PA
|
D:ADP1600
|
3.6
|
43.1
|
1.0
|
O
|
D:HOH1709
|
3.7
|
26.3
|
1.0
|
O
|
D:HOH1707
|
3.8
|
29.8
|
1.0
|
CG
|
D:ASP87
|
4.0
|
31.6
|
1.0
|
N
|
D:GLY88
|
4.2
|
28.9
|
1.0
|
K
|
D:K1603
|
4.3
|
24.5
|
1.0
|
OD1
|
D:ASP52
|
4.4
|
29.9
|
1.0
|
O2B
|
D:ADP1600
|
4.4
|
43.1
|
1.0
|
O2A
|
D:ADP1600
|
4.5
|
43.1
|
1.0
|
OD2
|
D:ASP398
|
4.5
|
36.9
|
1.0
|
OD2
|
D:ASP87
|
4.6
|
31.6
|
1.0
|
O
|
D:HOH1729
|
4.8
|
31.2
|
1.0
|
OG1
|
D:THR90
|
4.8
|
26.9
|
1.0
|
O5'
|
D:ADP1600
|
4.9
|
43.1
|
1.0
|
CG
|
D:ASP398
|
4.9
|
36.9
|
1.0
|
CA
|
D:GLY88
|
5.0
|
28.9
|
1.0
|
CA
|
D:ASP87
|
5.0
|
31.6
|
1.0
|
|
Reference:
J.Wagner,
A.I.Caravajal,
F.Beck,
A.Bracher,
W.Wan,
S.Bohn,
R.Koerner,
W.Baumeister,
R.Fernandez-Busnadiego,
F.U.Hartl.
Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Fri Aug 2 21:44:41 2024
|