Fluorine in PDB 8p5h: Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533
Enzymatic activity of Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533
All present enzymatic activity of Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533:
2.7.11.1;
Protein crystallography data
The structure of Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533, PDB code: 8p5h
was solved by
T.Battista,
M.S.Semrau,
A.Heroux,
G.Lolli,
P.Storici,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
66.90 /
1.94
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
84.65,
96.31,
109.19,
90,
90,
90
|
R / Rfree (%)
|
17 /
19.3
|
Other elements in 8p5h:
The structure of Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533 also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533
(pdb code 8p5h). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533, PDB code: 8p5h:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 8p5h
Go back to
Fluorine Binding Sites List in 8p5h
Fluorine binding site 1 out
of 2 in the Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:32.7
occ:1.00
|
F27
|
A:XBJ301
|
0.0
|
32.7
|
1.0
|
C25
|
A:XBJ301
|
1.4
|
28.4
|
1.0
|
C24
|
A:XBJ301
|
2.3
|
27.2
|
1.0
|
C26
|
A:XBJ301
|
2.4
|
26.3
|
1.0
|
H24
|
A:XBJ301
|
2.5
|
27.6
|
1.0
|
H26
|
A:XBJ301
|
2.6
|
26.8
|
1.0
|
HE3
|
A:LYS46
|
2.6
|
41.5
|
1.0
|
HE3
|
A:MET92
|
2.8
|
33.2
|
1.0
|
HE2
|
A:MET92
|
2.9
|
33.1
|
1.0
|
CE
|
A:MET92
|
3.2
|
33.0
|
1.0
|
O
|
A:HOH403
|
3.3
|
33.5
|
1.0
|
HZ3
|
A:LYS46
|
3.3
|
42.0
|
1.0
|
CE
|
A:LYS46
|
3.3
|
43.6
|
1.0
|
O
|
A:HOH433
|
3.4
|
44.0
|
1.0
|
HE2
|
A:LYS46
|
3.5
|
41.5
|
1.0
|
C23
|
A:XBJ301
|
3.6
|
27.2
|
1.0
|
OD1
|
A:ASP165
|
3.6
|
41.7
|
1.0
|
C21
|
A:XBJ301
|
3.6
|
25.6
|
1.0
|
NZ
|
A:LYS46
|
3.7
|
41.2
|
1.0
|
SD
|
A:MET92
|
3.7
|
34.2
|
1.0
|
HB1
|
A:ALA164
|
3.8
|
28.6
|
1.0
|
HD11
|
A:LEU145
|
3.9
|
35.0
|
1.0
|
HZ2
|
A:LYS46
|
3.9
|
41.9
|
1.0
|
HG21
|
A:VAL30
|
4.1
|
27.6
|
1.0
|
C22
|
A:XBJ301
|
4.1
|
27.7
|
1.0
|
HE1
|
A:MET92
|
4.1
|
33.2
|
1.0
|
HG21
|
A:VAL76
|
4.2
|
33.6
|
1.0
|
HB2
|
A:LYS46
|
4.2
|
27.3
|
1.0
|
H23
|
A:XBJ301
|
4.4
|
27.3
|
1.0
|
HG13
|
A:VAL30
|
4.4
|
26.2
|
1.0
|
HZ1
|
A:LYS46
|
4.5
|
41.9
|
1.0
|
HG13
|
A:VAL76
|
4.6
|
35.9
|
1.0
|
H
|
A:ASP165
|
4.6
|
25.4
|
1.0
|
CD
|
A:LYS46
|
4.6
|
37.6
|
1.0
|
CD1
|
A:LEU145
|
4.7
|
35.9
|
1.0
|
CB
|
A:ALA164
|
4.7
|
28.3
|
1.0
|
HB2
|
A:MET92
|
4.7
|
27.9
|
1.0
|
HG23
|
A:VAL30
|
4.7
|
27.7
|
1.0
|
HD2
|
A:LYS46
|
4.7
|
37.3
|
1.0
|
HD12
|
A:LEU145
|
4.8
|
34.9
|
1.0
|
CG
|
A:ASP165
|
4.8
|
49.7
|
1.0
|
CG2
|
A:VAL30
|
4.8
|
29.1
|
1.0
|
C07
|
A:XBJ301
|
4.9
|
26.9
|
1.0
|
HB2
|
A:ALA164
|
4.9
|
28.6
|
1.0
|
HD13
|
A:LEU145
|
4.9
|
35.0
|
1.0
|
HB3
|
A:ALA44
|
4.9
|
25.4
|
1.0
|
HB1
|
A:ALA44
|
5.0
|
25.4
|
1.0
|
HB3
|
A:ALA164
|
5.0
|
28.6
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 8p5h
Go back to
Fluorine Binding Sites List in 8p5h
Fluorine binding site 2 out
of 2 in the Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:42.1
occ:1.00
|
F27
|
B:XBJ301
|
0.0
|
42.1
|
1.0
|
C25
|
B:XBJ301
|
1.4
|
38.2
|
1.0
|
C24
|
B:XBJ301
|
2.4
|
32.5
|
1.0
|
C26
|
B:XBJ301
|
2.4
|
40.2
|
1.0
|
H24
|
B:XBJ301
|
2.5
|
33.6
|
1.0
|
H26
|
B:XBJ301
|
2.6
|
38.7
|
1.0
|
HE3
|
B:MET92
|
2.8
|
41.7
|
1.0
|
HE3
|
B:LYS46
|
2.9
|
42.5
|
1.0
|
HE2
|
B:MET92
|
3.0
|
41.5
|
1.0
|
HZ3
|
B:LYS46
|
3.2
|
44.4
|
1.0
|
O
|
B:HOH425
|
3.2
|
51.6
|
1.0
|
O
|
B:HOH433
|
3.2
|
36.7
|
1.0
|
CE
|
B:MET92
|
3.2
|
43.2
|
1.0
|
HE2
|
B:LYS46
|
3.4
|
42.5
|
1.0
|
CE
|
B:LYS46
|
3.5
|
42.2
|
1.0
|
HD11
|
B:LEU145
|
3.6
|
35.4
|
1.0
|
OD1
|
B:ASP165
|
3.6
|
30.8
|
0.5
|
C23
|
B:XBJ301
|
3.6
|
31.2
|
1.0
|
C21
|
B:XBJ301
|
3.7
|
35.9
|
1.0
|
HB1
|
B:ALA164
|
3.7
|
32.9
|
1.0
|
NZ
|
B:LYS46
|
3.8
|
45.4
|
1.0
|
SD
|
B:MET92
|
3.8
|
37.8
|
1.0
|
C22
|
B:XBJ301
|
4.1
|
35.4
|
1.0
|
HE1
|
B:MET92
|
4.1
|
41.7
|
1.0
|
HG21
|
B:VAL30
|
4.2
|
32.5
|
1.0
|
HG21
|
B:VAL76
|
4.2
|
34.4
|
1.0
|
HZ2
|
B:LYS46
|
4.2
|
44.3
|
1.0
|
H23
|
B:XBJ301
|
4.4
|
32.5
|
1.0
|
HB2
|
B:LYS46
|
4.4
|
32.1
|
1.0
|
CD1
|
B:LEU145
|
4.4
|
36.4
|
1.0
|
HZ1
|
B:LYS46
|
4.4
|
44.4
|
1.0
|
HG13
|
B:VAL30
|
4.5
|
32.1
|
1.0
|
HG13
|
B:VAL76
|
4.5
|
35.5
|
1.0
|
HD12
|
B:LEU145
|
4.5
|
35.4
|
1.0
|
H
|
B:ASP165
|
4.6
|
28.6
|
1.0
|
CB
|
B:ALA164
|
4.6
|
33.9
|
1.0
|
CG
|
B:ASP165
|
4.7
|
40.3
|
0.5
|
HB2
|
B:ALA164
|
4.8
|
32.9
|
1.0
|
HB2
|
B:MET92
|
4.8
|
32.6
|
1.0
|
HD13
|
B:LEU145
|
4.8
|
35.4
|
1.0
|
HG23
|
B:VAL30
|
4.8
|
32.5
|
1.0
|
HB3
|
B:ALA164
|
4.8
|
32.9
|
1.0
|
CD
|
B:LYS46
|
4.8
|
40.5
|
1.0
|
C07
|
B:XBJ301
|
4.9
|
39.2
|
1.0
|
HD23
|
B:LEU145
|
4.9
|
36.1
|
1.0
|
CG2
|
B:VAL30
|
5.0
|
33.4
|
1.0
|
N08
|
B:XBJ301
|
5.0
|
36.5
|
1.0
|
|
Reference:
T.Battista,
M.S.Semrau,
G.Lolli,
P.Storici.
Crystal Structures of ULK1 in Complex with Kcgs Compounds To Be Published.
Page generated: Fri Aug 2 21:48:44 2024
|