Fluorine in PDB 8ptg: Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs

The structure of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs (pdb code 8ptg). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs, PDB code: 8ptg:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:68.1 occ:1.00 F1 A:BEF1002 0.0 68.1 1.0 BE A:BEF1002 1.5 70.0 1.0 O3B A:ADP1000 2.3 71.8 1.0 F3 A:BEF1002 2.5 73.8 1.0 F2 A:BEF1002 2.6 78.8 1.0 O2B A:ADP1000 2.9 61.3 1.0 PB A:ADP1000 3.0 60.4 1.0 CA A:PRO180 3.1 52.3 1.0 N A:LYS181 3.3 59.8 1.0 CB A:PRO180 3.4 52.8 1.0 NH2 B:ARG366 3.6 68.3 1.0 C A:PRO180 3.7 54.2 1.0 O1B A:ADP1000 4.0 68.2 1.0 NH1 B:ARG366 4.1 71.8 1.0 MG A:MG1001 4.2 41.6 1.0 CG A:PRO180 4.2 57.3 1.0 N A:PRO180 4.2 51.5 1.0 CZ B:ARG366 4.2 66.0 1.0 O3A A:ADP1000 4.3 45.8 1.0 NH2 A:ARG212 4.4 62.4 1.0 NZ A:LYS184 4.4 60.1 1.0 CA A:LYS181 4.5 54.3 1.0 CE A:LYS184 4.6 55.6 1.0 O A:PRO179 4.6 65.6 1.0 O B:GLY337 4.6 89.0 1.0 NH1 A:ARG212 4.7 62.5 1.0 C A:PRO179 4.8 60.2 1.0 CD2 A:LEU320 4.9 81.5 1.0 CD A:PRO180 4.9 57.3 1.0 O A:PRO180 4.9 59.4 1.0

Fluorine binding site 2 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:78.8 occ:1.00 F2 A:BEF1002 0.0 78.8 1.0 BE A:BEF1002 1.6 70.0 1.0 O A:PRO179 2.5 65.6 1.0 F3 A:BEF1002 2.5 73.8 1.0 O2B A:ADP1000 2.5 61.3 1.0 F1 A:BEF1002 2.6 68.1 1.0 CE A:LYS184 2.6 55.6 1.0 CA A:PRO180 2.7 52.3 1.0 NZ A:LYS184 2.9 60.1 1.0 C A:PRO179 3.0 60.2 1.0 N A:PRO180 3.1 51.5 1.0 C A:PRO180 3.4 54.2 1.0 N A:LYS181 3.5 59.8 1.0 PB A:ADP1000 3.8 60.4 1.0 CD2 A:LEU320 3.8 81.5 1.0 CB A:PRO180 3.9 52.8 1.0 O3B A:ADP1000 4.0 71.8 1.0 CD A:LYS184 4.1 61.6 1.0 O A:ALA178 4.1 68.6 1.0 CD A:PRO180 4.2 57.3 1.0 CA A:PRO179 4.2 58.8 1.0 CG A:PRO180 4.3 57.3 1.0 N A:ALA182 4.3 56.2 1.0 O A:PRO180 4.4 59.4 1.0 C A:ALA178 4.4 69.3 1.0 N A:PRO179 4.6 67.6 1.0 CG A:LYS184 4.6 58.9 1.0 O1B A:ADP1000 4.7 68.2 1.0 CA A:LYS181 4.7 54.3 1.0 CG A:LEU320 4.7 80.7 1.0 CB A:ALA178 4.8 62.4 1.0 CB A:LYS184 4.8 49.7 1.0 O3A A:ADP1000 4.8 45.8 1.0 CB A:ALA182 4.9 56.7 1.0

Fluorine binding site 3 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:73.8 occ:1.00 F3 A:BEF1002 0.0 73.8 1.0 BE A:BEF1002 1.5 70.0 1.0 O2B A:ADP1000 2.2 61.3 1.0 F1 A:BEF1002 2.5 68.1 1.0 F2 A:BEF1002 2.5 78.8 1.0 PB A:ADP1000 2.7 60.4 1.0 NZ A:LYS184 2.8 60.1 1.0 CE A:LYS184 2.8 55.6 1.0 O1B A:ADP1000 2.9 68.2 1.0 MG A:MG1001 3.0 41.6 1.0 O3B A:ADP1000 3.2 71.8 1.0 CB A:LYS184 3.9 49.7 1.0 CD A:LYS184 4.0 61.6 1.0 OG1 A:THR185 4.2 55.9 1.0 O3A A:ADP1000 4.3 45.8 1.0 CG A:LYS184 4.5 58.9 1.0 CA A:PRO180 4.7 52.3 1.0 CD2 A:LEU320 4.9 81.5 1.0 N A:LYS181 4.9 59.8 1.0 O A:PRO179 4.9 65.6 1.0 N A:THR185 5.0 52.4 1.0

Fluorine binding site 4 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ B:F503 b:90.3 occ:1.00 F1 B:BEF503 0.0 90.3 1.0 BE B:BEF503 1.5 87.7 1.0 NH2 C:ARG366 1.8 61.9 1.0 NH2 B:ARG212 2.5 80.0 1.0 F3 B:BEF503 2.5 90.1 1.0 F2 B:BEF503 2.6 94.5 1.0 CZ C:ARG366 2.6 58.6 1.0 O2B B:ADP501 2.7 84.5 1.0 NH1 C:ARG366 2.8 60.2 1.0 O C:LYS336 3.5 68.5 1.0 O C:GLY337 3.6 74.8 1.0 N B:LYS181 3.6 75.5 1.0 CZ B:ARG212 3.6 79.8 1.0 CB B:PRO180 3.8 66.2 1.0 CA C:GLY337 3.8 63.9 1.0 NE C:ARG366 3.8 52.4 1.0 C C:GLY337 4.0 67.7 1.0 CA B:PRO180 4.1 66.7 1.0 NH1 B:ARG212 4.1 79.0 1.0 PB B:ADP501 4.2 68.2 1.0 C B:PRO180 4.3 72.4 1.0 CA B:LYS181 4.4 67.0 1.0 C C:LYS336 4.4 60.7 1.0 N C:GLY337 4.6 63.5 1.0 NE B:ARG212 4.7 77.3 1.0 O2A B:ADP501 4.8 81.0 1.0 O3B B:ADP501 4.8 78.0 1.0 MG B:MG502 4.9 60.6 1.0 CB B:LYS181 4.9 67.9 1.0 CG B:PRO180 4.9 75.3 1.0 O C:GLY339 5.0 70.1 1.0 O1B B:ADP501 5.0 78.3 1.0

Fluorine binding site 5 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ B:F503 b:94.5 occ:1.00 F2 B:BEF503 0.0 94.5 1.0 BE B:BEF503 1.6 87.7 1.0 CA B:PRO180 2.5 66.7 1.0 F3 B:BEF503 2.5 90.1 1.0 O2B B:ADP501 2.5 84.5 1.0 F1 B:BEF503 2.6 90.3 1.0 CB B:PRO180 2.9 66.2 1.0 N B:LYS181 3.0 75.5 1.0 C B:PRO180 3.2 72.4 1.0 PB B:ADP501 3.4 68.2 1.0 O1B B:ADP501 3.4 78.3 1.0 NZ B:LYS184 3.5 67.4 1.0 N B:PRO180 3.6 66.2 1.0 CG B:PRO180 3.6 75.3 1.0 NH2 C:ARG366 3.9 61.9 1.0 CD2 B:LEU320 4.0 87.0 1.0 O B:PRO179 4.1 85.0 1.0 C B:PRO179 4.2 76.2 1.0 O3B B:ADP501 4.3 78.0 1.0 CD B:PRO180 4.3 70.0 1.0 CA B:LYS181 4.3 67.0 1.0 O B:PRO180 4.5 78.5 1.0 CE B:LYS184 4.6 59.8 1.0 NH1 C:ARG366 4.6 60.2 1.0 NH2 B:ARG212 4.7 80.0 1.0 O3A B:ADP501 4.7 59.6 1.0 CA C:GLY337 4.7 63.9 1.0 CZ C:ARG366 4.7 58.6 1.0 MG B:MG502 4.9 60.6 1.0

Fluorine binding site 6 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ B:F503 b:90.1 occ:1.00 F3 B:BEF503 0.0 90.1 1.0 BE B:BEF503 1.5 87.7 1.0 F2 B:BEF503 2.5 94.5 1.0 F1 B:BEF503 2.5 90.3 1.0 O2B B:ADP501 2.6 84.5 1.0 MG B:MG502 2.8 60.6 1.0 O3B B:ADP501 3.3 78.0 1.0 NH2 B:ARG212 3.3 80.0 1.0 PB B:ADP501 3.3 68.2 1.0 NH1 B:ARG212 3.4 79.0 1.0 NH1 C:ARG366 3.7 60.2 1.0 CZ B:ARG212 3.8 79.8 1.0 O C:GLY337 4.0 74.8 1.0 NH2 C:ARG366 4.1 61.9 1.0 O1B B:ADP501 4.1 78.3 1.0 CZ C:ARG366 4.3 58.6 1.0 OE1 B:GLU211 4.4 97.0 1.0 O2A B:ADP501 4.5 81.0 1.0 NZ B:LYS184 4.7 67.4 1.0 O3A B:ADP501 4.7 59.6 1.0 OG1 B:THR185 4.8 66.3 1.0 N B:LYS181 4.8 75.5 1.0 C C:GLY337 4.8 67.7 1.0 CA C:GLY337 4.9 63.9 1.0 CA B:PRO180 4.9 66.7 1.0

Fluorine binding site 7 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:88.7 occ:1.00 F1 C:BEF1002 0.0 88.7 1.0 BE C:BEF1002 1.5 83.4 1.0 O3B C:ADP1000 2.4 75.5 1.0 F3 C:BEF1002 2.5 85.3 1.0 F2 C:BEF1002 2.6 87.7 1.0 NH2 C:ARG212 3.0 76.3 1.0 NH2 D:ARG366 3.1 74.2 1.0 NH1 D:ARG366 3.4 75.1 1.0 CA D:GLY337 3.6 76.4 1.0 PB C:ADP1000 3.7 61.8 1.0 CZ D:ARG366 3.7 68.4 1.0 O D:GLY337 3.8 82.9 1.0 N C:LYS181 3.9 69.6 1.0 CB C:PRO180 3.9 54.8 1.0 CA C:PRO180 3.9 56.6 1.0 CZ C:ARG212 3.9 74.7 1.0 NH1 C:ARG212 3.9 77.5 1.0 O2B C:ADP1000 4.0 72.7 1.0 C D:GLY337 4.1 77.8 1.0 O D:LYS336 4.2 80.2 1.0 O3A C:ADP1000 4.3 69.8 1.0 MG C:MG1001 4.3 64.7 1.0 C C:PRO180 4.4 63.8 1.0 N D:GLY337 4.6 74.2 1.0 CG C:PRO180 4.7 63.7 1.0 C D:LYS336 4.8 73.0 1.0 O1B C:ADP1000 4.9 69.9 1.0 NZ C:LYS184 4.9 58.6 1.0 CA C:LYS181 4.9 59.0 1.0 NE D:ARG366 5.0 60.1 1.0

Fluorine binding site 8 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:87.7 occ:1.00 F2 C:BEF1002 0.0 87.7 1.0 BE C:BEF1002 1.6 83.4 1.0 F3 C:BEF1002 2.5 85.3 1.0 O3B C:ADP1000 2.6 75.5 1.0 F1 C:BEF1002 2.6 88.7 1.0 NZ C:LYS184 2.7 58.6 1.0 CA C:PRO180 2.9 56.6 1.0 CD2 C:LEU320 3.0 76.5 1.0 CB C:PRO180 3.5 54.8 1.0 CE C:LYS184 3.5 57.7 1.0 N C:PRO180 3.6 59.8 1.0 CG C:PRO180 3.8 63.7 1.0 PB C:ADP1000 3.8 61.8 1.0 O C:PRO179 3.9 71.2 1.0 N C:LYS181 4.0 69.6 1.0 C C:PRO180 4.0 63.8 1.0 C C:PRO179 4.0 63.9 1.0 CG C:LEU320 4.1 75.9 1.0 CD C:PRO180 4.3 63.0 1.0 O1B C:ADP1000 4.3 69.9 1.0 O2B C:ADP1000 4.5 72.7 1.0 CD1 C:LEU320 4.6 76.8 1.0 MG C:MG1001 4.8 64.7 1.0 CD C:LYS184 4.9 61.9 1.0 CA D:GLY337 5.0 76.4 1.0

Fluorine binding site 9 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:85.3 occ:1.00 F3 C:BEF1002 0.0 85.3 1.0 BE C:BEF1002 1.5 83.4 1.0 F2 C:BEF1002 2.5 87.7 1.0 F1 C:BEF1002 2.5 88.7 1.0 MG C:MG1001 2.6 64.7 1.0 O3B C:ADP1000 2.9 75.5 1.0 O2B C:ADP1000 3.3 72.7 1.0 PB C:ADP1000 3.6 61.8 1.0 OE2 C:GLU211 4.0 85.1 1.0 NZ C:LYS184 4.0 58.6 1.0 CE C:LYS184 4.1 57.7 1.0 OE1 C:GLU211 4.2 88.2 1.0 NH1 C:ARG212 4.3 77.5 1.0 NH1 C:ARG269 4.4 80.9 1.0 CD C:GLU211 4.5 86.7 1.0 O1B C:ADP1000 4.5 69.9 1.0 NH2 C:ARG212 4.6 76.3 1.0 OG1 C:THR185 4.6 64.8 1.0 O D:GLY337 4.7 82.9 1.0 CD2 C:LEU320 4.7 76.5 1.0 O3A C:ADP1000 4.9 69.8 1.0 CZ C:ARG212 4.9 74.7 1.0 NH1 D:ARG366 5.0 75.1 1.0

Fluorine binding site 10 out of 18 in the Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of the Transcription Termination Factor Rho Bound to Rna at the Pbs and Sbs within 5.0Å range: probe atom residue distance (Å) B Occ D:F1002 b:102.5 occ:1.00 F1 D:BEF1002 0.0 102.5 1.0 BE D:BEF1002 1.5 98.0 1.0 O1B D:ADP1000 2.3 90.4 1.0 F3 D:BEF1002 2.5 99.3 1.0 F2 D:BEF1002 2.6 104.8 1.0 NH2 E:ARG366 2.6 58.8 1.0 N D:LYS181 2.7 79.0 1.0 CA D:PRO180 3.0 72.4 1.0 CB D:PRO180 3.0 70.5 1.0 C D:PRO180 3.3 76.0 1.0 NH1 E:ARG366 3.4 57.0 1.0 CZ E:ARG366 3.4 52.4 1.0 PB D:ADP1000 3.6 74.8 1.0 CA D:LYS181 3.8 76.6 1.0 NH2 D:ARG212 3.8 83.8 1.0 O E:LYS336 4.0 67.2 1.0 O3A D:ADP1000 4.0 83.7 1.0 O2B D:ADP1000 4.0 81.3 1.0 CA E:GLY337 4.0 72.7 1.0 CG D:PRO180 4.2 75.2 1.0 N D:PRO180 4.4 77.0 1.0 O D:PRO180 4.5 83.7 1.0 CB D:LYS181 4.5 77.0 1.0 NZ D:LYS184 4.6 71.2 1.0 C E:LYS336 4.7 63.9 1.0 NE E:ARG366 4.7 46.0 1.0 N E:GLY337 4.7 72.5 1.0 C E:GLY337 4.8 74.7 1.0 O E:GLY337 4.8 81.4 1.0 O3B D:ADP1000 4.9 84.5 1.0 CZ D:ARG212 4.9 85.6 1.0 O D:PRO179 5.0 87.6 1.0

N.Said, T.Hilal, M.C.Wahl. Structure of the Transcription Termination Factor Rho in Complex with Rof Nat Commun 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-47439-6