Fluorine in PDB 8qe2: Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21

Enzymatic activity of Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21

All present enzymatic activity of Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21:
2.5.1.6;

Protein crystallography data

The structure of Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21, PDB code: 8qe2 was solved by M.Schimpl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.85 / 1.11
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 68.16, 94.01, 116.647, 90, 90, 90
R / Rfree (%) 16.3 / 18.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21 (pdb code 8qe2). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21, PDB code: 8qe2:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 8qe2

Go back to Fluorine Binding Sites List in 8qe2
Fluorine binding site 1 out of 2 in the Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:7.9
occ:1.00
F1 A:U7X401 0.0 7.9 1.0
C21 A:U7X401 1.3 7.2 1.0
F A:U7X401 2.2 7.9 1.0
O1 A:U7X401 2.2 7.2 1.0
C20 A:U7X401 2.7 7.4 1.0
O A:GLY273 3.2 7.0 1.0
C22 A:U7X401 3.3 8.1 1.0
C19 A:U7X401 3.4 7.1 1.0
CE2 A:PHE20 3.7 7.3 1.0
CZ A:PHE20 3.9 7.3 1.0
C A:GLY273 4.2 6.0 1.0
C23 A:U7X401 4.4 8.2 1.0
C18 A:U7X401 4.4 7.6 1.0
O A:HOH629 4.5 6.9 0.5
O A:HOH657 4.5 7.3 1.0
CA A:TRP274 4.6 6.0 1.0
O A:GLY275 4.8 6.2 1.0
N A:TRP274 4.8 5.6 1.0
C17 A:U7X401 4.9 7.8 1.0
CD2 A:PHE20 5.0 7.0 1.0

Fluorine binding site 2 out of 2 in 8qe2

Go back to Fluorine Binding Sites List in 8qe2
Fluorine binding site 2 out of 2 in the Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Human MAT2A Bound to S-Adenosylmethionine and Compound 21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:7.9
occ:1.00
F A:U7X401 0.0 7.9 1.0
C21 A:U7X401 1.4 7.2 1.0
F1 A:U7X401 2.2 7.9 1.0
O1 A:U7X401 2.2 7.2 1.0
C20 A:U7X401 2.9 7.4 1.0
C22 A:U7X401 2.9 8.1 1.0
O A:HOH629 3.3 6.9 0.5
O A:HOH564 3.4 8.2 1.0
O A:GLY275 3.6 6.2 1.0
O A:HOH897 4.1 6.9 0.5
C19 A:U7X401 4.2 7.1 1.0
C23 A:U7X401 4.3 8.2 1.0
O A:GLY273 4.3 7.0 1.0
C A:GLY275 4.7 5.8 1.0
O A:HOH657 4.7 7.3 1.0
O A:HOH776 4.8 7.1 1.0
N A:GLY275 4.9 5.9 1.0

Reference:

S.J.Atkinson, S.K.Bagal, A.Argyrou, S.Askin, T.Cheung, E.Chiarparin, M.Coen, I.T.Collie, I.L.Dale, C.De Fusco, K.Dillman, L.Evans, L.J.Feron, A.J.Foster, M.Grondine, V.Kantae, G.M.Lamont, S.Lamont, J.T.Lynch, S.Nilsson Lill, G.R.Robb, J.Saeh, M.Schimpl, J.S.Scott, J.Smith, B.Srinivasan, S.Tentarelli, M.Vazquez-Chantada, D.Wagner, J.J.Walsh, D.Watson, B.Williamson. Development of A Series of Pyrrolopyridone MAT2A Inhibitors. J.Med.Chem. 2024.
ISSN: ISSN 0022-2623
PubMed: 38466661
DOI: 10.1021/ACS.JMEDCHEM.3C01860
Page generated: Fri Aug 2 22:24:38 2024

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