Fluorine in PDB 8qxs: Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation

Enzymatic activity of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation

All present enzymatic activity of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation:
5.6.1.7;

Other elements in 8qxs:

The structure of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation also contains other interesting chemical elements:

Potassium (K) 14 atoms
Magnesium (Mg) 14 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Fluorine atom in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation (pdb code 8qxs). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 21 binding sites of Fluorine where determined in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation, PDB code: 8qxs:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 21 in 8qxs

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Fluorine binding site 1 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1602

b:22.2
occ:1.00
 F1 A:BEF1602 0.0 22.2 1.0
BE A:BEF1602 1.5 22.2 1.0
O1B A:ADP1600 2.2 20.5 1.0
MG A:MG1601 2.3 23.8 1.0
O3B A:ADP1600 2.5 20.5 1.0
F2 A:BEF1602 2.5 22.2 1.0
F3 A:BEF1602 2.5 22.2 1.0
PB A:ADP1600 2.7 20.5 1.0
OD1 A:ASP87 2.8 26.3 1.0
O A:HOH1702 2.9 32.5 1.0
O3A A:ADP1600 3.1 20.5 1.0
O2A A:ADP1600 3.4 20.5 1.0
O A:HOH1701 3.6 23.3 1.0
OD2 A:ASP398 3.7 35.7 1.0
PA A:ADP1600 3.9 20.5 1.0
CG A:ASP87 3.9 26.3 1.0
O2B A:ADP1600 4.1 20.5 1.0
K A:K1603 4.2 28.2 1.0
OD1 A:ASP52 4.3 22.1 1.0
N A:GLY88 4.3 21.0 1.0
CG A:ASP398 4.4 35.7 1.0
OD2 A:ASP87 4.5 26.3 1.0
O1A A:ADP1600 4.9 20.5 1.0
OD1 A:ASP398 4.9 35.7 1.0
CA A:ASP87 4.9 26.3 1.0

Fluorine binding site 2 out of 21 in 8qxs

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Fluorine binding site 2 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1602

b:22.2
occ:1.00
 F2 A:BEF1602 0.0 22.2 1.0
BE A:BEF1602 1.5 22.2 1.0
F3 A:BEF1602 2.5 22.2 1.0
F1 A:BEF1602 2.5 22.2 1.0
O3B A:ADP1600 2.7 20.5 1.0
OD1 A:ASP52 3.0 22.1 1.0
OG1 A:THR89 3.2 18.9 1.0
CG A:ASP52 3.8 22.1 1.0
OD1 A:ASP87 3.9 26.3 1.0
N A:GLY53 3.9 20.3 1.0
PB A:ADP1600 3.9 20.5 1.0
OD2 A:ASP398 4.0 35.7 1.0
N A:THR89 4.1 18.9 1.0
CG2 A:THR89 4.1 18.9 1.0
O1B A:ADP1600 4.2 20.5 1.0
CB A:THR89 4.2 18.9 1.0
N A:GLY88 4.3 21.0 1.0
OD2 A:ASP52 4.4 22.1 1.0
MG A:MG1601 4.5 23.8 1.0
O3A A:ADP1600 4.5 20.5 1.0
CA A:ASP52 4.6 22.1 1.0
CG A:ASP398 4.6 35.7 1.0
OD1 A:ASP398 4.7 35.7 1.0
OG1 A:THR90 4.7 17.7 1.0
CA A:ASP87 4.7 26.3 1.0
K A:K1603 4.7 28.2 1.0
CA A:THR89 4.7 18.9 1.0
CA A:GLY53 4.7 20.3 1.0
C A:ASP52 4.7 22.1 1.0
CB A:ASP52 4.8 22.1 1.0
N A:THR90 4.9 17.7 1.0
C A:ASP87 4.9 26.3 1.0

Fluorine binding site 3 out of 21 in 8qxs

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Fluorine binding site 3 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1602

b:22.2
occ:1.00
 F3 A:BEF1602 0.0 22.2 1.0
BE A:BEF1602 1.5 22.2 1.0
O3B A:ADP1600 1.6 20.5 1.0
O3A A:ADP1600 2.4 20.5 1.0
PB A:ADP1600 2.5 20.5 1.0
F2 A:BEF1602 2.5 22.2 1.0
F1 A:BEF1602 2.5 22.2 1.0
OG1 A:THR90 2.8 17.7 1.0
K A:K1603 2.8 28.2 1.0
O1B A:ADP1600 3.3 20.5 1.0
O2B A:ADP1600 3.7 20.5 1.0
CB A:THR90 3.7 17.7 1.0
OG1 A:THR89 3.7 18.9 1.0
PA A:ADP1600 3.8 20.5 1.0
N A:THR90 3.8 17.7 1.0
N A:GLY53 4.0 20.3 1.0
O1A A:ADP1600 4.3 20.5 1.0
O2A A:ADP1600 4.3 20.5 1.0
N A:THR89 4.3 18.9 1.0
CA A:THR90 4.4 17.7 1.0
CA A:GLY53 4.6 20.3 1.0
MG A:MG1601 4.6 23.8 1.0
OD1 A:ASP52 4.6 22.1 1.0
O A:LYS51 4.7 20.2 1.0
C A:THR89 4.8 18.9 1.0
N A:GLY88 4.8 21.0 1.0
O5' A:ADP1600 4.9 20.5 1.0
CB A:THR89 4.9 18.9 1.0
CA A:THR89 4.9 18.9 1.0
CG2 A:THR90 4.9 17.7 1.0
OD1 A:ASP87 4.9 26.3 1.0
C A:ASP52 5.0 22.1 1.0

Fluorine binding site 4 out of 21 in 8qxs

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Fluorine binding site 4 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1602

b:30.8
occ:1.00
 F1 B:BEF1602 0.0 30.8 1.0
BE B:BEF1602 1.5 30.8 1.0
MG B:MG1601 2.0 27.6 1.0
O1B B:ADP1600 2.2 60.2 1.0
O3B B:ADP1600 2.4 60.2 1.0
F2 B:BEF1602 2.5 30.8 1.0
F3 B:BEF1602 2.5 30.8 1.0
PB B:ADP1600 2.6 60.2 1.0
O3A B:ADP1600 3.0 60.2 1.0
O B:HOH1702 3.1 36.9 1.0
O2A B:ADP1600 3.2 60.2 1.0
OD1 B:ASP87 3.3 30.8 1.0
O B:HOH1701 3.5 27.3 1.0
PA B:ADP1600 3.7 60.2 1.0
K B:K1603 4.1 29.8 1.0
O2B B:ADP1600 4.1 60.2 1.0
CG B:ASP87 4.2 30.8 1.0
N B:GLY88 4.2 25.8 1.0
OD1 B:ASP52 4.4 24.2 1.0
OD2 B:ASP398 4.5 37.9 1.0
O1A B:ADP1600 4.7 60.2 1.0
OD2 B:ASP87 4.7 30.8 1.0
CG B:ASP398 4.8 37.9 1.0
O5' B:ADP1600 4.9 60.2 1.0
CA B:ASP87 5.0 30.8 1.0
CA B:GLY88 5.0 25.8 1.0

Fluorine binding site 5 out of 21 in 8qxs

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Fluorine binding site 5 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1602

b:30.8
occ:1.00
 F2 B:BEF1602 0.0 30.8 1.0
BE B:BEF1602 1.5 30.8 1.0
F3 B:BEF1602 2.5 30.8 1.0
F1 B:BEF1602 2.5 30.8 1.0
O3B B:ADP1600 2.8 60.2 1.0
OD1 B:ASP52 2.9 24.2 1.0
OG1 B:THR89 3.2 24.4 1.0
CG B:ASP52 3.5 24.2 1.0
N B:GLY53 3.8 22.5 1.0
OD2 B:ASP52 3.9 24.2 1.0
PB B:ADP1600 4.0 60.2 1.0
N B:THR89 4.2 24.4 1.0
MG B:MG1601 4.2 27.6 1.0
O1B B:ADP1600 4.2 60.2 1.0
CA B:ASP52 4.3 24.2 1.0
CB B:THR89 4.3 24.4 1.0
CG2 B:THR89 4.3 24.4 1.0
N B:GLY88 4.4 25.8 1.0
O3A B:ADP1600 4.5 60.2 1.0
OD2 B:ASP398 4.5 37.9 1.0
CB B:ASP52 4.5 24.2 1.0
C B:ASP52 4.5 24.2 1.0
K B:K1603 4.6 29.8 1.0
OG1 B:THR90 4.6 25.6 1.0
OD1 B:ASP87 4.6 30.8 1.0
CA B:GLY53 4.7 22.5 1.0
OD1 B:ASP398 4.8 37.9 1.0
CA B:THR89 4.8 24.4 1.0
CA B:ASP87 4.8 30.8 1.0
CG B:ASP398 4.8 37.9 1.0
N B:THR90 4.9 25.6 1.0

Fluorine binding site 6 out of 21 in 8qxs

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Fluorine binding site 6 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1602

b:30.8
occ:1.00
 F3 B:BEF1602 0.0 30.8 1.0
BE B:BEF1602 1.5 30.8 1.0
O3B B:ADP1600 1.5 60.2 1.0
O3A B:ADP1600 2.3 60.2 1.0
PB B:ADP1600 2.4 60.2 1.0
F2 B:BEF1602 2.5 30.8 1.0
F1 B:BEF1602 2.5 30.8 1.0
OG1 B:THR90 2.6 25.6 1.0
K B:K1603 2.8 29.8 1.0
O1B B:ADP1600 3.4 60.2 1.0
O2B B:ADP1600 3.6 60.2 1.0
CB B:THR90 3.6 25.6 1.0
OG1 B:THR89 3.7 24.4 1.0
N B:THR90 3.7 25.6 1.0
PA B:ADP1600 3.7 60.2 1.0
N B:GLY53 3.9 22.5 1.0
N B:THR89 4.2 24.4 1.0
O1A B:ADP1600 4.2 60.2 1.0
O2A B:ADP1600 4.3 60.2 1.0
CA B:THR90 4.3 25.6 1.0
MG B:MG1601 4.3 27.6 1.0
CA B:GLY53 4.5 22.5 1.0
C B:THR89 4.7 24.4 1.0
O B:LYS51 4.7 22.0 1.0
N B:GLY88 4.8 25.8 1.0
CA B:THR89 4.8 24.4 1.0
CB B:THR89 4.8 24.4 1.0
O5' B:ADP1600 4.8 60.2 1.0
CG2 B:THR90 4.8 25.6 1.0
OD1 B:ASP52 4.8 24.2 1.0
C B:GLY88 4.9 25.8 1.0
C B:ASP52 4.9 24.2 1.0
CA B:GLY88 4.9 25.8 1.0
CA B:ASP52 4.9 24.2 1.0

Fluorine binding site 7 out of 21 in 8qxs

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Fluorine binding site 7 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1602

b:24.7
occ:1.00
 F1 C:BEF1602 0.0 24.7 1.0
BE C:BEF1602 1.5 24.7 1.0
MG C:MG1601 2.1 25.8 1.0
O1B C:ADP1600 2.2 22.8 1.0
O3B C:ADP1600 2.5 22.8 1.0
F2 C:BEF1602 2.5 24.7 1.0
F3 C:BEF1602 2.5 24.7 1.0
PB C:ADP1600 2.7 22.8 1.0
O C:HOH1702 2.8 31.8 1.0
OD1 C:ASP87 2.8 29.2 1.0
O3A C:ADP1600 3.2 22.8 1.0
O C:HOH1701 3.4 25.6 1.0
O2A C:ADP1600 3.4 22.8 1.0
CG C:ASP87 3.9 29.2 1.0
PA C:ADP1600 3.9 22.8 1.0
O2B C:ADP1600 4.1 22.8 1.0
N C:GLY88 4.2 24.6 1.0
K C:K1603 4.2 28.8 1.0
OD1 C:ASP52 4.3 23.0 1.0
OD2 C:ASP398 4.5 37.0 1.0
OD2 C:ASP87 4.5 29.2 1.0
CG C:ASP398 4.8 37.0 1.0
CA C:ASP87 4.9 29.2 1.0
CA C:GLY88 4.9 24.6 1.0
O1A C:ADP1600 5.0 22.8 1.0

Fluorine binding site 8 out of 21 in 8qxs

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Fluorine binding site 8 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1602

b:24.7
occ:1.00
 F2 C:BEF1602 0.0 24.7 1.0
BE C:BEF1602 1.5 24.7 1.0
F3 C:BEF1602 2.5 24.7 1.0
F1 C:BEF1602 2.5 24.7 1.0
O3B C:ADP1600 2.7 22.8 1.0
OD1 C:ASP52 2.9 23.0 1.0
OG1 C:THR89 3.3 23.7 1.0
CG C:ASP52 3.8 23.0 1.0
N C:GLY53 3.9 21.4 1.0
PB C:ADP1600 4.0 22.8 1.0
OD1 C:ASP87 4.0 29.2 1.0
N C:THR89 4.1 23.7 1.0
N C:GLY88 4.2 24.6 1.0
O1B C:ADP1600 4.2 22.8 1.0
OD2 C:ASP52 4.3 23.0 1.0
MG C:MG1601 4.3 25.8 1.0
CB C:THR89 4.4 23.7 1.0
CG2 C:THR89 4.4 23.7 1.0
OD2 C:ASP398 4.5 37.0 1.0
CA C:ASP52 4.5 23.0 1.0
O3A C:ADP1600 4.6 22.8 1.0
OG1 C:THR90 4.7 25.1 1.0
K C:K1603 4.7 28.8 1.0
CA C:ASP87 4.7 29.2 1.0
C C:ASP52 4.8 23.0 1.0
CB C:ASP52 4.8 23.0 1.0
CA C:GLY53 4.8 21.4 1.0
CA C:THR89 4.8 23.7 1.0
CG C:ASP398 4.9 37.0 1.0
OD1 C:ASP398 4.9 37.0 1.0
C C:ASP87 4.9 29.2 1.0
N C:THR90 4.9 25.1 1.0

Fluorine binding site 9 out of 21 in 8qxs

Go back to Fluorine Binding Sites List in 8qxs
Fluorine binding site 9 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1602

b:24.7
occ:1.00
 F3 C:BEF1602 0.0 24.7 1.0
BE C:BEF1602 1.5 24.7 1.0
O3B C:ADP1600 1.6 22.8 1.0
O3A C:ADP1600 2.4 22.8 1.0
PB C:ADP1600 2.5 22.8 1.0
F2 C:BEF1602 2.5 24.7 1.0
F1 C:BEF1602 2.5 24.7 1.0
K C:K1603 2.8 28.8 1.0
OG1 C:THR90 2.8 25.1 1.0
O1B C:ADP1600 3.3 22.8 1.0
O2B C:ADP1600 3.7 22.8 1.0
PA C:ADP1600 3.7 22.8 1.0
CB C:THR90 3.7 25.1 1.0
N C:THR90 3.9 25.1 1.0
OG1 C:THR89 3.9 23.7 1.0
N C:GLY53 4.0 21.4 1.0
O2A C:ADP1600 4.2 22.8 1.0
O1A C:ADP1600 4.3 22.8 1.0
N C:THR89 4.4 23.7 1.0
MG C:MG1601 4.4 25.8 1.0
CA C:THR90 4.5 25.1 1.0
OD1 C:ASP52 4.5 23.0 1.0
CA C:GLY53 4.6 21.4 1.0
O C:LYS51 4.7 20.8 1.0
OD1 C:ASP87 4.7 29.2 1.0
O5' C:ADP1600 4.9 22.8 1.0
N C:GLY88 4.9 24.6 1.0
C C:ASP52 4.9 23.0 1.0
C C:THR89 4.9 23.7 1.0
CA C:ASP52 4.9 23.0 1.0
O C:HOH1702 5.0 31.8 1.0
CG2 C:THR90 5.0 25.1 1.0

Fluorine binding site 10 out of 21 in 8qxs

Go back to Fluorine Binding Sites List in 8qxs
Fluorine binding site 10 out of 21 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Wide GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1602

b:26.8
occ:1.00
 F1 D:BEF1602 0.0 26.8 1.0
BE D:BEF1602 1.5 26.8 1.0
MG D:MG1601 2.1 29.3 1.0
O1B D:ADP1600 2.2 21.5 1.0
O3B D:ADP1600 2.4 21.5 1.0
F2 D:BEF1602 2.5 26.8 1.0
F3 D:BEF1602 2.5 26.8 1.0
PB D:ADP1600 2.6 21.5 1.0
OD1 D:ASP87 2.7 29.6 1.0
O3A D:ADP1600 3.0 21.5 1.0
O D:HOH1702 3.1 36.2 1.0
O2A D:ADP1600 3.4 21.5 1.0
O D:HOH1701 3.5 29.4 1.0
PA D:ADP1600 3.8 21.5 1.0
CG D:ASP87 3.9 29.6 1.0
O2B D:ADP1600 4.1 21.5 1.0
K D:K1603 4.2 31.9 1.0
N D:GLY88 4.3 25.5 1.0
OD2 D:ASP87 4.5 29.6 1.0
OD2 D:ASP398 4.5 37.9 1.0
O1A D:ADP1600 4.7 21.5 1.0
OD1 D:ASP52 4.8 24.2 1.0
CG D:ASP398 4.8 37.9 1.0
CA D:ASP87 4.9 29.6 1.0
O5' D:ADP1600 5.0 21.5 1.0

Reference:

J.Wagner, A.I.Caravajal, F.Beck, A.Bracher, W.Wan, S.Bohn, R.Koerner, W.Baumeister, R.Fernandez-Busnadiego, F.U.Hartl. Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Fri Aug 2 22:32:15 2024

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