Fluorine in PDB 8r1a: Model of the Membrane-Bound GBP1 Oligomer

The structure of Model of the Membrane-Bound GBP1 Oligomer also contains other interesting chemical elements:

Magnesium	(Mg)	6 atoms
Aluminium	(Al)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Model of the Membrane-Bound GBP1 Oligomer (pdb code 8r1a). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Model of the Membrane-Bound GBP1 Oligomer, PDB code: 8r1a:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ A:F600 b:100.0 occ:1.00 F1 A:AF3600 0.0 100.0 1.0 AL A:AF3600 1.7 100.0 1.0 OG1 A:THR75 2.5 100.0 1.0 O1B A:GDP602 2.5 100.0 1.0 MG A:MG601 2.5 100.0 1.0 O2B A:GDP602 2.9 100.0 1.0 F2 A:AF3600 2.9 100.0 1.0 F3 A:AF3600 2.9 100.0 1.0 CB A:THR75 3.0 100.0 1.0 PB A:GDP602 3.2 100.0 1.0 N A:THR75 3.2 100.0 1.0 OG A:SER52 3.6 100.0 1.0 CA A:THR75 3.7 100.0 1.0 O3B A:GDP602 4.1 100.0 1.0 NH1 A:ARG48 4.2 100.0 1.0 O1A A:GDP602 4.3 100.0 1.0 CB A:HIS74 4.3 100.0 1.0 C A:HIS74 4.3 100.0 1.0 CG2 A:THR75 4.4 100.0 1.0 O A:THR75 4.4 100.0 1.0 N A:HIS74 4.4 100.0 1.0 O3A A:GDP602 4.5 100.0 1.0 NZ A:LYS51 4.5 100.0 1.0 O A:THR98 4.5 100.0 1.0 C A:THR75 4.6 100.0 1.0 CA A:HIS74 4.6 100.0 1.0 N A:GLY100 4.8 100.0 1.0 PA A:GDP602 4.9 100.0 1.0 CB A:SER52 5.0 100.0 1.0

Fluorine binding site 2 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ A:F600 b:100.0 occ:1.00 F2 A:AF3600 0.0 100.0 1.0 AL A:AF3600 1.7 100.0 1.0 NZ A:LYS51 2.4 100.0 1.0 O1B A:GDP602 2.8 100.0 1.0 F3 A:AF3600 2.9 100.0 1.0 F1 A:AF3600 2.9 100.0 1.0 CA A:GLY100 3.1 100.0 1.0 CA A:TYR47 3.2 100.0 1.0 N A:GLY100 3.2 100.0 1.0 O3B A:GDP602 3.4 100.0 1.0 CE A:LYS51 3.4 100.0 1.0 CB A:TYR47 3.5 100.0 1.0 PB A:GDP602 3.5 100.0 1.0 N A:ARG48 3.5 100.0 1.0 C A:TYR47 3.9 100.0 1.0 O A:LEU46 3.9 100.0 1.0 O2B A:GDP602 4.0 100.0 1.0 N A:TYR47 4.1 100.0 1.0 C A:GLY100 4.3 100.0 1.0 C A:GLU99 4.3 100.0 1.0 C A:LEU46 4.4 100.0 1.0 O A:THR98 4.5 100.0 1.0 CD A:LYS51 4.7 100.0 1.0 CA A:ARG48 4.8 100.0 1.0 O A:GLY100 4.8 100.0 1.0 NH1 A:ARG48 4.9 100.0 1.0 CG A:TYR47 4.9 100.0 1.0 O3A A:GDP602 5.0 100.0 1.0 CA A:GLU99 5.0 100.0 1.0 OG1 A:THR75 5.0 100.0 1.0

Fluorine binding site 3 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ A:F600 b:100.0 occ:1.00 F3 A:AF3600 0.0 100.0 1.0 AL A:AF3600 1.7 100.0 1.0 O1B A:GDP602 2.8 100.0 1.0 F2 A:AF3600 2.9 100.0 1.0 F1 A:AF3600 2.9 100.0 1.0 NH1 A:ARG48 3.0 100.0 1.0 N A:HIS74 3.1 100.0 1.0 CD A:ARG48 3.3 100.0 1.0 CA A:SER73 3.6 100.0 1.0 N A:ARG48 3.7 100.0 1.0 CB A:TYR47 3.8 100.0 1.0 CZ A:ARG48 3.8 100.0 1.0 C A:SER73 3.8 100.0 1.0 NE A:ARG48 3.9 100.0 1.0 CB A:SER73 4.0 100.0 1.0 CA A:HIS74 4.1 100.0 1.0 CB A:HIS74 4.2 100.0 1.0 N A:THR75 4.2 100.0 1.0 CA A:TYR47 4.3 100.0 1.0 PB A:GDP602 4.3 100.0 1.0 CG A:ARG48 4.4 100.0 1.0 C A:TYR47 4.5 100.0 1.0 CD2 A:TYR47 4.5 100.0 1.0 CA A:ARG48 4.5 100.0 1.0 O A:GLN72 4.5 100.0 1.0 C A:HIS74 4.6 100.0 1.0 CG A:TYR47 4.6 100.0 1.0 N A:SER73 4.7 100.0 1.0 MG A:MG601 4.8 100.0 1.0 O2B A:GDP602 4.9 100.0 1.0 O A:THR75 4.9 100.0 1.0 O3B A:GDP602 5.0 100.0 1.0 NH2 A:ARG48 5.0 100.0 1.0 N A:GLY100 5.0 100.0 1.0

Fluorine binding site 4 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ B:F600 b:100.0 occ:1.00 F1 B:AF3600 0.0 100.0 1.0 AL B:AF3600 1.7 100.0 1.0 NZ B:LYS51 2.4 100.0 1.0 O3B B:GDP602 2.7 100.0 1.0 F2 B:AF3600 2.9 100.0 1.0 F3 B:AF3600 2.9 100.0 1.0 O1B B:GDP602 2.9 100.0 1.0 CA B:GLY100 3.1 100.0 1.0 CA B:TYR47 3.1 100.0 1.0 N B:GLY100 3.2 100.0 1.0 PB B:GDP602 3.2 100.0 1.0 CE B:LYS51 3.4 100.0 1.0 CB B:TYR47 3.5 100.0 1.0 N B:ARG48 3.5 100.0 1.0 O2B B:GDP602 3.7 100.0 1.0 C B:TYR47 3.8 100.0 1.0 O B:LEU46 3.8 100.0 1.0 N B:TYR47 4.0 100.0 1.0 C B:GLY100 4.3 100.0 1.0 C B:LEU46 4.3 100.0 1.0 C B:GLU99 4.4 100.0 1.0 O B:THR98 4.5 100.0 1.0 CD B:LYS51 4.7 100.0 1.0 O3A B:GDP602 4.7 100.0 1.0 CA B:ARG48 4.8 100.0 1.0 MG B:MG601 4.8 100.0 1.0 O B:GLY100 4.9 100.0 1.0 O B:GLY45 5.0 100.0 1.0 CG B:TYR47 5.0 100.0 1.0 O B:TYR47 5.0 100.0 1.0

Fluorine binding site 5 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ B:F600 b:100.0 occ:1.00 F2 B:AF3600 0.0 100.0 1.0 AL B:AF3600 1.7 100.0 1.0 O3B B:GDP602 2.4 100.0 1.0 MG B:MG601 2.4 100.0 1.0 O2B B:GDP602 2.7 100.0 1.0 OG1 B:THR75 2.7 100.0 1.0 F1 B:AF3600 2.9 100.0 1.0 F3 B:AF3600 2.9 100.0 1.0 CB B:THR75 3.1 100.0 1.0 PB B:GDP602 3.1 100.0 1.0 N B:THR75 3.1 100.0 1.0 CA B:THR75 3.6 100.0 1.0 OG B:SER52 3.9 100.0 1.0 O1B B:GDP602 4.0 100.0 1.0 O B:THR75 4.1 100.0 1.0 C B:HIS74 4.2 100.0 1.0 N B:HIS74 4.2 100.0 1.0 O2A B:GDP602 4.2 100.0 1.0 NH1 B:ARG48 4.3 100.0 1.0 O3A B:GDP602 4.3 100.0 1.0 CB B:HIS74 4.3 100.0 1.0 C B:THR75 4.4 100.0 1.0 CG2 B:THR75 4.5 100.0 1.0 CA B:HIS74 4.5 100.0 1.0 NZ B:LYS51 4.6 100.0 1.0 O B:THR98 4.6 100.0 1.0 N B:GLY100 4.7 100.0 1.0 PA B:GDP602 4.8 100.0 1.0

Fluorine binding site 6 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ B:F600 b:100.0 occ:1.00 F3 B:AF3600 0.0 100.0 1.0 AL B:AF3600 1.7 100.0 1.0 O3B B:GDP602 2.5 100.0 1.0 F1 B:AF3600 2.9 100.0 1.0 F2 B:AF3600 2.9 100.0 1.0 NH1 B:ARG48 3.1 100.0 1.0 CD B:ARG48 3.2 100.0 1.0 N B:HIS74 3.4 100.0 1.0 N B:ARG48 3.4 100.0 1.0 CB B:TYR47 3.4 100.0 1.0 CA B:SER73 3.5 100.0 1.0 CB B:SER73 3.9 100.0 1.0 CZ B:ARG48 3.9 100.0 1.0 NE B:ARG48 3.9 100.0 1.0 CA B:TYR47 3.9 100.0 1.0 C B:SER73 4.0 100.0 1.0 PB B:GDP602 4.0 100.0 1.0 C B:TYR47 4.1 100.0 1.0 CG B:ARG48 4.2 100.0 1.0 CA B:ARG48 4.2 100.0 1.0 CD2 B:TYR47 4.3 100.0 1.0 CG B:TYR47 4.3 100.0 1.0 CA B:HIS74 4.5 100.0 1.0 O1B B:GDP602 4.6 100.0 1.0 N B:THR75 4.6 100.0 1.0 CB B:HIS74 4.6 100.0 1.0 O B:GLN72 4.6 100.0 1.0 N B:SER73 4.6 100.0 1.0 O2B B:GDP602 4.7 100.0 1.0 CB B:ARG48 4.8 100.0 1.0 O3A B:GDP602 4.9 100.0 1.0 C B:HIS74 4.9 100.0 1.0 MG B:MG601 4.9 100.0 1.0 N B:GLY100 5.0 100.0 1.0

Fluorine binding site 7 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ C:F600 b:100.0 occ:1.00 F1 C:AF3600 0.0 100.0 1.0 AL C:AF3600 1.7 100.0 1.0 OG1 C:THR75 2.5 100.0 1.0 O1B C:GDP602 2.5 100.0 1.0 MG C:MG601 2.5 100.0 1.0 O2B C:GDP602 2.9 100.0 1.0 F2 C:AF3600 2.9 100.0 1.0 F3 C:AF3600 2.9 100.0 1.0 CB C:THR75 3.0 100.0 1.0 PB C:GDP602 3.2 100.0 1.0 N C:THR75 3.2 100.0 1.0 OG C:SER52 3.6 100.0 1.0 CA C:THR75 3.7 100.0 1.0 O3B C:GDP602 4.1 100.0 1.0 NH1 C:ARG48 4.2 100.0 1.0 O1A C:GDP602 4.3 100.0 1.0 CB C:HIS74 4.3 100.0 1.0 C C:HIS74 4.3 100.0 1.0 CG2 C:THR75 4.4 100.0 1.0 O C:THR75 4.4 100.0 1.0 N C:HIS74 4.4 100.0 1.0 O3A C:GDP602 4.5 100.0 1.0 NZ C:LYS51 4.5 100.0 1.0 O C:THR98 4.5 100.0 1.0 C C:THR75 4.6 100.0 1.0 CA C:HIS74 4.6 100.0 1.0 N C:GLY100 4.8 100.0 1.0 PA C:GDP602 4.9 100.0 1.0 CB C:SER52 5.0 100.0 1.0

Fluorine binding site 8 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ C:F600 b:100.0 occ:1.00 F2 C:AF3600 0.0 100.0 1.0 AL C:AF3600 1.7 100.0 1.0 NZ C:LYS51 2.4 100.0 1.0 O1B C:GDP602 2.8 100.0 1.0 F3 C:AF3600 2.9 100.0 1.0 F1 C:AF3600 2.9 100.0 1.0 CA C:GLY100 3.1 100.0 1.0 CA C:TYR47 3.2 100.0 1.0 N C:GLY100 3.2 100.0 1.0 O3B C:GDP602 3.4 100.0 1.0 CE C:LYS51 3.4 100.0 1.0 CB C:TYR47 3.5 100.0 1.0 PB C:GDP602 3.5 100.0 1.0 N C:ARG48 3.5 100.0 1.0 C C:TYR47 3.9 100.0 1.0 O C:LEU46 3.9 100.0 1.0 O2B C:GDP602 4.0 100.0 1.0 N C:TYR47 4.1 100.0 1.0 C C:GLY100 4.3 100.0 1.0 C C:GLU99 4.3 100.0 1.0 C C:LEU46 4.4 100.0 1.0 O C:THR98 4.5 100.0 1.0 CD C:LYS51 4.7 100.0 1.0 CA C:ARG48 4.8 100.0 1.0 O C:GLY100 4.8 100.0 1.0 NH1 C:ARG48 4.9 100.0 1.0 CG C:TYR47 4.9 100.0 1.0 O3A C:GDP602 5.0 100.0 1.0 CA C:GLU99 5.0 100.0 1.0 OG1 C:THR75 5.0 100.0 1.0

Fluorine binding site 9 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ C:F600 b:100.0 occ:1.00 F3 C:AF3600 0.0 100.0 1.0 AL C:AF3600 1.7 100.0 1.0 O1B C:GDP602 2.8 100.0 1.0 F2 C:AF3600 2.9 100.0 1.0 F1 C:AF3600 2.9 100.0 1.0 NH1 C:ARG48 3.0 100.0 1.0 N C:HIS74 3.1 100.0 1.0 CD C:ARG48 3.3 100.0 1.0 CA C:SER73 3.5 100.0 1.0 N C:ARG48 3.7 100.0 1.0 CB C:TYR47 3.8 100.0 1.0 CZ C:ARG48 3.8 100.0 1.0 C C:SER73 3.8 100.0 1.0 NE C:ARG48 3.9 100.0 1.0 CB C:SER73 4.0 100.0 1.0 CA C:HIS74 4.1 100.0 1.0 CB C:HIS74 4.2 100.0 1.0 N C:THR75 4.2 100.0 1.0 CA C:TYR47 4.3 100.0 1.0 PB C:GDP602 4.3 100.0 1.0 CG C:ARG48 4.4 100.0 1.0 C C:TYR47 4.5 100.0 1.0 CD2 C:TYR47 4.5 100.0 1.0 CA C:ARG48 4.5 100.0 1.0 O C:GLN72 4.5 100.0 1.0 C C:HIS74 4.6 100.0 1.0 CG C:TYR47 4.6 100.0 1.0 N C:SER73 4.7 100.0 1.0 MG C:MG601 4.8 100.0 1.0 O2B C:GDP602 4.9 100.0 1.0 O C:THR75 4.9 100.0 1.0 O3B C:GDP602 5.0 100.0 1.0 NH2 C:ARG48 5.0 100.0 1.0 N C:GLY100 5.0 100.0 1.0

Fluorine binding site 10 out of 18 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ D:F600 b:100.0 occ:1.00 F1 D:AF3600 0.0 100.0 1.0 AL D:AF3600 1.7 100.0 1.0 NZ D:LYS51 2.4 100.0 1.0 O3B D:GDP602 2.7 100.0 1.0 F2 D:AF3600 2.9 100.0 1.0 F3 D:AF3600 2.9 100.0 1.0 O1B D:GDP602 2.9 100.0 1.0 CA D:GLY100 3.1 100.0 1.0 CA D:TYR47 3.1 100.0 1.0 N D:GLY100 3.2 100.0 1.0 PB D:GDP602 3.2 100.0 1.0 CE D:LYS51 3.4 100.0 1.0 CB D:TYR47 3.5 100.0 1.0 N D:ARG48 3.5 100.0 1.0 O2B D:GDP602 3.7 100.0 1.0 C D:TYR47 3.8 100.0 1.0 O D:LEU46 3.8 100.0 1.0 N D:TYR47 4.0 100.0 1.0 C D:GLY100 4.3 100.0 1.0 C D:LEU46 4.3 100.0 1.0 C D:GLU99 4.4 100.0 1.0 O D:THR98 4.5 100.0 1.0 CD D:LYS51 4.7 100.0 1.0 O3A D:GDP602 4.7 100.0 1.0 CA D:ARG48 4.8 100.0 1.0 MG D:MG601 4.8 100.0 1.0 O D:GLY100 4.9 100.0 1.0 O D:GLY45 5.0 100.0 1.0 CG D:TYR47 5.0 100.0 1.0 O D:TYR47 5.0 100.0 1.0

M.Weismehl, X.Chu, M.Kutsch, P.Lauterjung, C.Herrmann, M.Kudryashev, O.Daumke. Elucidating the Activation Mechanism For GBP1 Oligomerization To Be Published.