Fluorine in PDB 8sce: Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
Enzymatic activity of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
All present enzymatic activity of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide:
2.7.11.1;
Protein crystallography data
The structure of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide, PDB code: 8sce
was solved by
J.K.Muckelbauer,
K.Ghosh,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.00 /
1.89
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
135.812,
140.235,
86.949,
90,
126.14,
90
|
R / Rfree (%)
|
20.2 /
22.8
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
(pdb code 8sce). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide, PDB code: 8sce:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 1 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:18.8
occ:1.00
|
F2
|
A:ZVD501
|
0.0
|
18.8
|
1.0
|
C15
|
A:ZVD501
|
1.4
|
18.7
|
1.0
|
H17
|
A:ZVD501
|
2.0
|
18.3
|
1.0
|
C16
|
A:ZVD501
|
2.4
|
22.4
|
1.0
|
C14
|
A:ZVD501
|
2.4
|
20.7
|
1.0
|
O2
|
A:ZVD501
|
2.6
|
24.1
|
1.0
|
H16
|
A:ZVD501
|
2.7
|
20.1
|
1.0
|
H22
|
A:ZVD501
|
2.7
|
18.9
|
1.0
|
N6
|
A:ZVD501
|
2.9
|
24.3
|
1.0
|
C18
|
A:ZVD501
|
3.0
|
17.1
|
1.0
|
O1
|
A:ZVD501
|
3.1
|
24.3
|
1.0
|
O
|
A:HOH645
|
3.2
|
19.5
|
1.0
|
NH2
|
A:ARG273
|
3.2
|
22.2
|
1.0
|
C13
|
A:ZVD501
|
3.3
|
22.6
|
1.0
|
CA
|
A:GLY268
|
3.3
|
17.1
|
1.0
|
N
|
A:GLY268
|
3.3
|
17.4
|
1.0
|
H15
|
A:ZVD501
|
3.3
|
21.1
|
1.0
|
O
|
A:HOH613
|
3.3
|
25.9
|
1.0
|
H23
|
A:ZVD501
|
3.4
|
15.7
|
1.0
|
O
|
A:HOH627
|
3.4
|
28.2
|
1.0
|
H14
|
A:ZVD501
|
3.4
|
25.1
|
1.0
|
H24
|
A:ZVD501
|
3.5
|
24.4
|
1.0
|
C17
|
A:ZVD501
|
3.7
|
25.1
|
1.0
|
C
|
A:ASN267
|
3.8
|
19.2
|
1.0
|
H21
|
A:ZVD501
|
4.0
|
16.2
|
1.0
|
CZ
|
A:ARG273
|
4.0
|
23.2
|
1.0
|
H19
|
A:ZVD501
|
4.1
|
24.0
|
1.0
|
H20
|
A:ZVD501
|
4.1
|
24.7
|
1.0
|
O
|
A:ASN267
|
4.1
|
18.9
|
1.0
|
H5
|
A:ZVD501
|
4.2
|
23.0
|
1.0
|
NH1
|
A:ARG273
|
4.3
|
14.7
|
1.0
|
O
|
A:PRO266
|
4.4
|
19.0
|
1.0
|
C12
|
A:ZVD501
|
4.5
|
19.2
|
1.0
|
CA
|
A:ASN267
|
4.5
|
15.5
|
1.0
|
H18
|
A:ZVD501
|
4.5
|
25.7
|
1.0
|
C
|
A:GLY268
|
4.6
|
17.8
|
1.0
|
O
|
A:MET265
|
4.7
|
21.8
|
1.0
|
C
|
A:PRO266
|
4.8
|
19.2
|
1.0
|
N
|
A:SER269
|
4.9
|
14.3
|
1.0
|
N
|
A:ASN267
|
4.9
|
16.3
|
1.0
|
N4
|
A:ZVD501
|
4.9
|
24.0
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 2 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:28.1
occ:1.00
|
F1
|
A:ZVD501
|
0.0
|
28.1
|
1.0
|
C1
|
A:ZVD501
|
1.3
|
24.6
|
1.0
|
C2
|
A:ZVD501
|
2.3
|
23.5
|
1.0
|
C4
|
A:ZVD501
|
2.4
|
22.3
|
1.0
|
HN3
|
A:ZVD501
|
2.4
|
20.8
|
1.0
|
H2
|
A:ZVD501
|
2.6
|
23.4
|
1.0
|
N3
|
A:ZVD501
|
2.7
|
20.4
|
1.0
|
CB
|
A:TYR262
|
3.4
|
19.9
|
1.0
|
CD1
|
A:LEU318
|
3.5
|
22.1
|
1.0
|
CG1
|
A:VAL246
|
3.5
|
23.7
|
1.0
|
O
|
A:VAL263
|
3.5
|
26.8
|
1.0
|
N1
|
A:ZVD501
|
3.5
|
22.6
|
1.0
|
N2
|
A:ZVD501
|
3.6
|
25.9
|
1.0
|
CG
|
A:TYR262
|
3.7
|
23.8
|
1.0
|
O
|
A:HOH691
|
3.7
|
35.2
|
1.0
|
CB
|
A:VAL246
|
3.8
|
24.1
|
1.0
|
CG
|
A:MET265
|
3.9
|
25.8
|
1.0
|
C3
|
A:ZVD501
|
4.0
|
26.2
|
1.0
|
CD2
|
A:TYR262
|
4.0
|
24.2
|
1.0
|
C5
|
A:ZVD501
|
4.1
|
17.4
|
1.0
|
CD1
|
A:TYR262
|
4.4
|
25.7
|
1.0
|
CG2
|
A:VAL246
|
4.5
|
23.8
|
1.0
|
CB
|
A:ALA211
|
4.7
|
19.7
|
1.0
|
C
|
A:VAL263
|
4.7
|
25.1
|
1.0
|
N5
|
A:ZVD501
|
4.7
|
18.2
|
1.0
|
CG
|
A:LEU318
|
4.8
|
21.7
|
1.0
|
CA
|
A:TYR262
|
4.8
|
17.8
|
1.0
|
H4
|
A:ZVD501
|
4.9
|
17.4
|
1.0
|
SD
|
A:MET265
|
4.9
|
31.1
|
1.0
|
CE2
|
A:TYR262
|
4.9
|
25.7
|
1.0
|
N
|
A:VAL263
|
4.9
|
20.2
|
1.0
|
C6
|
A:ZVD501
|
5.0
|
18.1
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 3 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:21.7
occ:1.00
|
F2
|
B:ZVD501
|
0.0
|
21.7
|
1.0
|
C15
|
B:ZVD501
|
1.3
|
19.9
|
1.0
|
H17
|
B:ZVD501
|
2.0
|
18.9
|
1.0
|
C14
|
B:ZVD501
|
2.3
|
18.6
|
1.0
|
C16
|
B:ZVD501
|
2.4
|
23.2
|
1.0
|
H22
|
B:ZVD501
|
2.6
|
20.8
|
1.0
|
H16
|
B:ZVD501
|
2.6
|
16.4
|
1.0
|
O2
|
B:ZVD501
|
2.7
|
26.8
|
1.0
|
N6
|
B:ZVD501
|
2.9
|
24.1
|
1.0
|
C18
|
B:ZVD501
|
2.9
|
21.6
|
1.0
|
O1
|
B:ZVD501
|
3.0
|
20.3
|
1.0
|
NH2
|
B:ARG273
|
3.2
|
20.9
|
1.0
|
C13
|
B:ZVD501
|
3.2
|
22.1
|
1.0
|
H23
|
B:ZVD501
|
3.2
|
20.6
|
1.0
|
O
|
B:HOH630
|
3.3
|
18.9
|
1.0
|
CA
|
B:GLY268
|
3.3
|
16.3
|
1.0
|
H15
|
B:ZVD501
|
3.3
|
17.6
|
1.0
|
N
|
B:GLY268
|
3.3
|
17.1
|
1.0
|
O
|
B:HOH656
|
3.4
|
24.1
|
1.0
|
O
|
B:HOH620
|
3.4
|
23.0
|
1.0
|
H14
|
B:ZVD501
|
3.5
|
24.4
|
1.0
|
H24
|
B:ZVD501
|
3.6
|
27.5
|
1.0
|
C17
|
B:ZVD501
|
3.7
|
25.0
|
1.0
|
C
|
B:ASN267
|
3.7
|
21.7
|
1.0
|
H21
|
B:ZVD501
|
3.9
|
20.9
|
1.0
|
H20
|
B:ZVD501
|
4.0
|
25.7
|
1.0
|
CZ
|
B:ARG273
|
4.0
|
22.9
|
1.0
|
O
|
B:ASN267
|
4.1
|
19.6
|
1.0
|
H19
|
B:ZVD501
|
4.1
|
23.7
|
1.0
|
H5
|
B:ZVD501
|
4.2
|
23.9
|
1.0
|
NH1
|
B:ARG273
|
4.3
|
20.1
|
1.0
|
O
|
B:PRO266
|
4.4
|
20.8
|
1.0
|
CA
|
B:ASN267
|
4.4
|
17.6
|
1.0
|
C12
|
B:ZVD501
|
4.5
|
20.3
|
1.0
|
H18
|
B:ZVD501
|
4.5
|
25.4
|
1.0
|
C
|
B:GLY268
|
4.5
|
19.1
|
1.0
|
O
|
B:MET265
|
4.8
|
19.7
|
1.0
|
C
|
B:PRO266
|
4.8
|
21.4
|
1.0
|
N
|
B:SER269
|
4.9
|
16.5
|
1.0
|
N
|
B:ASN267
|
4.9
|
18.2
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 4 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:26.7
occ:1.00
|
F1
|
B:ZVD501
|
0.0
|
26.7
|
1.0
|
C1
|
B:ZVD501
|
1.3
|
26.9
|
1.0
|
HN3
|
B:ZVD501
|
2.3
|
21.2
|
1.0
|
C4
|
B:ZVD501
|
2.3
|
23.4
|
1.0
|
C2
|
B:ZVD501
|
2.4
|
25.7
|
1.0
|
H2
|
B:ZVD501
|
2.7
|
25.4
|
1.0
|
N3
|
B:ZVD501
|
2.7
|
22.1
|
1.0
|
CB
|
B:TYR262
|
3.3
|
20.6
|
1.0
|
O
|
B:VAL263
|
3.4
|
23.2
|
1.0
|
O
|
B:HOH685
|
3.5
|
37.4
|
1.0
|
N2
|
B:ZVD501
|
3.6
|
25.3
|
1.0
|
N1
|
B:ZVD501
|
3.6
|
24.2
|
1.0
|
CG1
|
B:VAL246
|
3.6
|
23.3
|
1.0
|
CD1
|
B:LEU318
|
3.7
|
22.7
|
1.0
|
CG
|
B:TYR262
|
3.7
|
24.7
|
1.0
|
CB
|
B:VAL246
|
3.8
|
23.4
|
1.0
|
CG
|
B:MET265
|
4.0
|
23.8
|
1.0
|
C3
|
B:ZVD501
|
4.0
|
23.4
|
1.0
|
C5
|
B:ZVD501
|
4.0
|
20.9
|
1.0
|
CD2
|
B:TYR262
|
4.1
|
25.9
|
1.0
|
CG2
|
B:VAL246
|
4.4
|
24.1
|
1.0
|
CD1
|
B:TYR262
|
4.5
|
28.3
|
1.0
|
CB
|
B:ALA211
|
4.6
|
18.3
|
1.0
|
C
|
B:VAL263
|
4.6
|
23.2
|
1.0
|
CA
|
B:TYR262
|
4.7
|
18.8
|
1.0
|
N5
|
B:ZVD501
|
4.7
|
21.1
|
1.0
|
N
|
B:VAL263
|
4.8
|
17.3
|
1.0
|
H4
|
B:ZVD501
|
4.8
|
19.0
|
1.0
|
C
|
B:TYR262
|
4.8
|
20.9
|
1.0
|
C6
|
B:ZVD501
|
4.9
|
19.1
|
1.0
|
CE2
|
B:TYR262
|
5.0
|
27.2
|
1.0
|
SD
|
B:MET265
|
5.0
|
29.3
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 5 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F502
b:20.9
occ:1.00
|
F2
|
D:ZVD502
|
0.0
|
20.9
|
1.0
|
C15
|
D:ZVD502
|
1.3
|
21.4
|
1.0
|
H17
|
D:ZVD502
|
2.0
|
22.1
|
1.0
|
C14
|
D:ZVD502
|
2.3
|
24.2
|
1.0
|
C16
|
D:ZVD502
|
2.4
|
23.9
|
1.0
|
H23
|
D:ZVD502
|
2.6
|
22.3
|
1.0
|
H16
|
D:ZVD502
|
2.7
|
23.0
|
1.0
|
O2
|
D:ZVD502
|
2.7
|
24.9
|
1.0
|
N6
|
D:ZVD502
|
2.8
|
26.5
|
1.0
|
C18
|
D:ZVD502
|
2.9
|
23.0
|
1.0
|
NH2
|
D:ARG273
|
3.1
|
17.6
|
1.0
|
O
|
D:HOH618
|
3.2
|
22.9
|
1.0
|
CA
|
D:GLY268
|
3.2
|
20.1
|
1.0
|
O1
|
D:ZVD502
|
3.2
|
31.0
|
1.0
|
C13
|
D:ZVD502
|
3.2
|
27.2
|
1.0
|
H22
|
D:ZVD502
|
3.2
|
22.5
|
1.0
|
H15
|
D:ZVD502
|
3.3
|
24.0
|
1.0
|
N
|
D:GLY268
|
3.3
|
18.6
|
1.0
|
H14
|
D:ZVD502
|
3.4
|
26.1
|
1.0
|
O
|
D:HOH622
|
3.4
|
31.3
|
1.0
|
O
|
D:HOH648
|
3.4
|
28.8
|
1.0
|
H24
|
D:ZVD502
|
3.5
|
25.0
|
1.0
|
C
|
D:ASN267
|
3.7
|
20.6
|
1.0
|
C17
|
D:ZVD502
|
3.8
|
24.8
|
1.0
|
H21
|
D:ZVD502
|
3.9
|
23.5
|
1.0
|
CZ
|
D:ARG273
|
4.0
|
28.9
|
1.0
|
H20
|
D:ZVD502
|
4.1
|
24.8
|
1.0
|
O
|
D:ASN267
|
4.1
|
20.1
|
1.0
|
H19
|
D:ZVD502
|
4.1
|
23.8
|
1.0
|
H5
|
D:ZVD502
|
4.2
|
20.7
|
1.0
|
NH1
|
D:ARG273
|
4.3
|
20.2
|
1.0
|
C12
|
D:ZVD502
|
4.4
|
23.7
|
1.0
|
O
|
D:PRO266
|
4.4
|
23.3
|
1.0
|
CA
|
D:ASN267
|
4.5
|
16.7
|
1.0
|
C
|
D:GLY268
|
4.5
|
23.1
|
1.0
|
H18
|
D:ZVD502
|
4.6
|
24.1
|
1.0
|
O
|
D:MET265
|
4.7
|
22.4
|
1.0
|
N
|
D:SER269
|
4.8
|
19.9
|
1.0
|
C
|
D:PRO266
|
4.9
|
22.6
|
1.0
|
N
|
D:ASN267
|
4.9
|
17.0
|
1.0
|
N4
|
D:ZVD502
|
4.9
|
21.1
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 6 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F502
b:31.4
occ:1.00
|
F1
|
D:ZVD502
|
0.0
|
31.4
|
1.0
|
C1
|
D:ZVD502
|
1.3
|
28.7
|
1.0
|
HN3
|
D:ZVD502
|
2.3
|
26.8
|
1.0
|
C2
|
D:ZVD502
|
2.3
|
25.6
|
1.0
|
C4
|
D:ZVD502
|
2.3
|
27.2
|
1.0
|
H2
|
D:ZVD502
|
2.6
|
25.6
|
1.0
|
N3
|
D:ZVD502
|
2.7
|
27.2
|
1.0
|
CB
|
D:TYR262
|
3.3
|
25.4
|
1.0
|
O
|
D:VAL263
|
3.3
|
30.0
|
1.0
|
N1
|
D:ZVD502
|
3.6
|
26.9
|
1.0
|
N2
|
D:ZVD502
|
3.6
|
27.8
|
1.0
|
CD1
|
D:LEU318
|
3.6
|
26.6
|
1.0
|
CG
|
D:TYR262
|
3.8
|
28.4
|
1.0
|
CG
|
D:MET265
|
3.8
|
27.8
|
1.0
|
CG1
|
D:VAL246
|
3.9
|
31.3
|
1.0
|
C3
|
D:ZVD502
|
4.0
|
28.1
|
1.0
|
C5
|
D:ZVD502
|
4.0
|
24.2
|
1.0
|
CB
|
D:VAL246
|
4.1
|
29.8
|
1.0
|
CD2
|
D:TYR262
|
4.2
|
29.7
|
1.0
|
CD1
|
D:TYR262
|
4.4
|
30.8
|
1.0
|
C
|
D:VAL263
|
4.5
|
30.7
|
1.0
|
N
|
D:VAL263
|
4.6
|
23.9
|
1.0
|
CA
|
D:TYR262
|
4.6
|
23.7
|
1.0
|
CB
|
D:ALA211
|
4.6
|
25.0
|
1.0
|
CG2
|
D:VAL246
|
4.6
|
30.2
|
1.0
|
N5
|
D:ZVD502
|
4.7
|
25.0
|
1.0
|
C
|
D:TYR262
|
4.7
|
26.5
|
1.0
|
SD
|
D:MET265
|
4.8
|
31.8
|
1.0
|
H4
|
D:ZVD502
|
4.8
|
23.8
|
1.0
|
C6
|
D:ZVD502
|
4.9
|
23.6
|
1.0
|
CE
|
D:MET265
|
5.0
|
28.3
|
1.0
|
CB
|
D:MET265
|
5.0
|
24.6
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 7 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F503
b:23.7
occ:1.00
|
F2
|
E:ZVD503
|
0.0
|
23.7
|
1.0
|
C15
|
E:ZVD503
|
1.4
|
22.8
|
1.0
|
H17
|
E:ZVD503
|
2.0
|
21.6
|
1.0
|
C14
|
E:ZVD503
|
2.4
|
22.7
|
1.0
|
C16
|
E:ZVD503
|
2.4
|
25.4
|
1.0
|
H16
|
E:ZVD503
|
2.7
|
23.0
|
1.0
|
O2
|
E:ZVD503
|
2.7
|
27.1
|
1.0
|
N6
|
E:ZVD503
|
2.8
|
22.1
|
1.0
|
H22
|
E:ZVD503
|
3.0
|
23.9
|
1.0
|
C18
|
E:ZVD503
|
3.0
|
24.6
|
1.0
|
H23
|
E:ZVD503
|
3.1
|
23.4
|
1.0
|
O
|
E:HOH604
|
3.1
|
29.0
|
1.0
|
NH2
|
E:ARG273
|
3.1
|
22.2
|
1.0
|
O
|
E:HOH627
|
3.2
|
25.5
|
1.0
|
O1
|
E:ZVD503
|
3.2
|
31.3
|
1.0
|
C13
|
E:ZVD503
|
3.3
|
25.9
|
1.0
|
CA
|
E:GLY268
|
3.3
|
19.3
|
1.0
|
H15
|
E:ZVD503
|
3.3
|
22.2
|
1.0
|
N
|
E:GLY268
|
3.3
|
19.8
|
1.0
|
O
|
E:HOH626
|
3.3
|
29.3
|
1.0
|
H14
|
E:ZVD503
|
3.3
|
22.4
|
1.0
|
H24
|
E:ZVD503
|
3.6
|
27.8
|
1.0
|
C17
|
E:ZVD503
|
3.8
|
29.5
|
1.0
|
C
|
E:ASN267
|
3.8
|
22.1
|
1.0
|
CZ
|
E:ARG273
|
4.0
|
28.6
|
1.0
|
H21
|
E:ZVD503
|
4.1
|
24.9
|
1.0
|
H20
|
E:ZVD503
|
4.1
|
28.7
|
1.0
|
H19
|
E:ZVD503
|
4.1
|
29.8
|
1.0
|
O
|
E:ASN267
|
4.1
|
21.1
|
1.0
|
H5
|
E:ZVD503
|
4.2
|
28.4
|
1.0
|
NH1
|
E:ARG273
|
4.3
|
16.4
|
1.0
|
C12
|
E:ZVD503
|
4.5
|
24.4
|
1.0
|
O
|
E:PRO266
|
4.5
|
22.7
|
1.0
|
CA
|
E:ASN267
|
4.5
|
17.2
|
1.0
|
C
|
E:GLY268
|
4.6
|
21.6
|
1.0
|
H18
|
E:ZVD503
|
4.6
|
29.8
|
1.0
|
O
|
E:MET265
|
4.7
|
20.6
|
1.0
|
N
|
E:SER269
|
4.8
|
18.9
|
1.0
|
C
|
E:PRO266
|
4.9
|
23.0
|
1.0
|
N
|
E:ASN267
|
4.9
|
16.7
|
1.0
|
N4
|
E:ZVD503
|
5.0
|
28.8
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 8sce
Go back to
Fluorine Binding Sites List in 8sce
Fluorine binding site 8 out
of 8 in the Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of IRAK4-Hsa Complexed with N-[(2R)-2-Fluoro-3- Hydroxy-3-Methylbutyl]-6-[(5-Fluoropyri-Yl)Amino]-4-[(Propan-2-Yl) Amino]Pyridine-3-Carboxamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F503
b:32.6
occ:1.00
|
F1
|
E:ZVD503
|
0.0
|
32.6
|
1.0
|
C1
|
E:ZVD503
|
1.3
|
28.3
|
1.0
|
HN3
|
E:ZVD503
|
2.3
|
25.5
|
1.0
|
C2
|
E:ZVD503
|
2.4
|
27.9
|
1.0
|
C4
|
E:ZVD503
|
2.4
|
26.8
|
1.0
|
H2
|
E:ZVD503
|
2.6
|
27.6
|
1.0
|
N3
|
E:ZVD503
|
2.7
|
25.6
|
1.0
|
CB
|
E:TYR262
|
3.3
|
26.4
|
1.0
|
O
|
E:VAL263
|
3.5
|
27.5
|
1.0
|
CD1
|
E:LEU318
|
3.6
|
26.3
|
1.0
|
N1
|
E:ZVD503
|
3.6
|
30.1
|
1.0
|
N2
|
E:ZVD503
|
3.6
|
28.8
|
1.0
|
CG1
|
E:VAL246
|
3.6
|
32.5
|
1.0
|
CG
|
E:TYR262
|
3.7
|
28.4
|
1.0
|
CB
|
E:VAL246
|
3.9
|
32.5
|
1.0
|
CG
|
E:MET265
|
4.0
|
27.4
|
1.0
|
C3
|
E:ZVD503
|
4.0
|
30.7
|
1.0
|
CD2
|
E:TYR262
|
4.0
|
29.2
|
1.0
|
C5
|
E:ZVD503
|
4.1
|
25.4
|
1.0
|
CD1
|
E:TYR262
|
4.3
|
30.8
|
1.0
|
CG2
|
E:VAL246
|
4.5
|
32.7
|
1.0
|
CB
|
E:ALA211
|
4.6
|
23.0
|
1.0
|
CA
|
E:TYR262
|
4.7
|
25.1
|
1.0
|
C
|
E:VAL263
|
4.7
|
29.9
|
1.0
|
N5
|
E:ZVD503
|
4.7
|
27.3
|
1.0
|
N
|
E:VAL263
|
4.8
|
27.4
|
1.0
|
C
|
E:TYR262
|
4.9
|
30.2
|
1.0
|
H4
|
E:ZVD503
|
4.9
|
23.5
|
1.0
|
CG
|
E:LEU318
|
5.0
|
26.1
|
1.0
|
CE2
|
E:TYR262
|
5.0
|
29.9
|
1.0
|
SD
|
E:MET265
|
5.0
|
31.0
|
1.0
|
C6
|
E:ZVD503
|
5.0
|
24.4
|
1.0
|
|
Reference:
S.R.Kumar,
S.Dudhgoankar,
J.B.Santella,
V.R.R.Paidi,
S.Nair,
R.Sistla,
H.Wu,
D.S.Gardner,
S.Stachura,
C.L.Cavallaro,
G.D.Brown,
W.J.Pitts,
J.Kempson,
A.J.Tebben,
J.S.Tokarski,
X.Zhu,
J.A.Carman,
K.Foster,
J.Caceres Cortes,
G.Everlof,
M.A.Galella,
A.Sarjeant,
D.A.Holloway,
L.Fan,
X.Li,
C.Chaudhry,
G.Locke,
A.Chimalakondra,
T.T.Mariappan,
S.Ruepp,
P.A.Elzinga,
A.Saxena,
D.Xie,
S.E.Kiefer,
C.Yan,
J.A.Newitt,
K.Ghosh,
R.K.Anumula,
J.S.Sack,
J.A.Tino,
P.H.Carter,
J.Hynes,
J.V.Duncia.
The Discovery of IRAK4 Inhibitor Clinical Candidates Bms-986126 and Bms-986147 For the Treatment of Autoimmune Diseases To Be Published.
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