Fluorine in PDB 8ski: Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx

Enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx, PDB code: 8ski was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.26 / 2.16
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 98.56, 98.56, 81.094, 90, 90, 120
R / Rfree (%) 20 / 24.9

Other elements in 8ski:

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx (pdb code 8ski). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx, PDB code: 8ski:

Fluorine binding site 1 out of 1 in 8ski

Go back to Fluorine Binding Sites List in 8ski
Fluorine binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:64.9
occ:1.00
 F24 A:B7P501 0.0 64.9 1.0
C23 A:B7P501 1.4 65.5 1.0
C25 A:B7P501 2.5 62.8 1.0
C22 A:B7P501 2.5 63.1 1.0
O26 A:B7P501 2.7 65.2 1.0
C8 P:DG8 3.3 53.1 1.0
C2' P:DG8 3.3 60.4 1.0
N9 P:DG8 3.3 55.2 1.0
O11 A:B7P501 3.5 63.9 1.0
C4 P:DG8 3.5 54.1 1.0
N7 P:DG8 3.5 52.9 1.0
C5 P:DG8 3.6 52.9 1.0
N27 A:B7P501 3.8 62.8 1.0
C1' P:DG8 3.8 56.2 1.0
N21 A:B7P501 3.8 65.2 1.0
NE A:ARG61 4.1 59.1 1.0
CD A:ARG61 4.1 59.0 1.0
CZ A:ARG61 4.2 62.8 1.0
N3 P:DG8 4.2 52.4 1.0
O08 A:B7P501 4.2 70.1 1.0
NH1 A:ARG61 4.3 59.9 1.0
C28 A:B7P501 4.3 60.0 1.0
P09 A:B7P501 4.5 78.0 1.0
C6 P:DG8 4.5 52.8 1.0
C3' P:DG8 4.7 55.2 1.0
NH2 A:ARG61 4.8 66.6 1.0
C2 P:DG8 4.9 57.8 1.0
O4' P:DG8 5.0 52.2 1.0
O4 T:DT3 5.0 67.5 1.0
N1 P:DG8 5.0 56.6 1.0

Reference:

H.Jung, H.Jung. N/A N/A.
Page generated: Fri Aug 2 23:57:51 2024

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