Fluorine in PDB 8sr1: Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound

The structure of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound also contains other interesting chemical elements:

Copper

(Cu)

9 atoms

The binding sites of Fluorine atom in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound (pdb code 8sr1). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound, PDB code: 8sr1:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Fluorine binding site 1 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ C:F310 b:0.5 occ:1.00 F1 C:WIY310 0.0 0.5 1.0 C1 C:WIY310 1.3 0.5 1.0 CA C:GLU238 1.8 41.9 1.0 F3 C:WIY310 2.1 0.5 1.0 F2 C:WIY310 2.1 0.5 1.0 CB C:GLU238 2.2 41.9 1.0 C2 C:WIY310 2.4 0.5 1.0 H2 C:WIY310 2.4 0.5 1.0 C C:GLU238 2.5 41.9 1.0 O C:GLU238 2.7 41.9 1.0 H1 C:WIY310 2.7 0.5 1.0 NH1 C:ARG165 3.1 41.7 1.0 N C:GLU238 3.1 41.9 1.0 O C:GLU237 3.4 46.5 1.0 N C:LEU239 3.4 38.1 1.0 CG C:GLU238 3.4 41.9 1.0 NH2 F:ARG206 3.5 41.1 1.0 C C:GLU237 3.7 46.5 1.0 C3 C:WIY310 3.7 0.5 1.0 OE1 C:GLU238 3.8 41.9 1.0 CD C:GLU238 3.8 41.9 1.0 H4 C:WIY310 3.9 0.5 1.0 CD2 C:HIS231 4.0 38.8 1.0 H6 C:WIY310 4.2 0.5 1.0 CZ C:ARG165 4.2 41.7 1.0 O C:LEU239 4.3 38.1 1.0 CZ F:ARG206 4.3 41.1 1.0 NH1 F:ARG206 4.3 41.1 1.0 H3 C:WIY310 4.4 0.5 1.0 NE2 C:HIS231 4.5 38.8 1.0 C C:LEU239 4.5 38.1 1.0 CA C:LEU239 4.5 38.1 1.0 NE C:ARG165 4.5 41.7 1.0 C4 C:WIY310 4.6 0.5 1.0 OE2 C:GLU238 4.7 41.9 1.0 CB C:HIS160 4.8 37.4 1.0 NE2 C:GLN161 4.8 37.0 1.0

Fluorine binding site 2 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ C:F310 b:0.5 occ:1.00 F2 C:WIY310 0.0 0.5 1.0 C1 C:WIY310 1.3 0.5 1.0 NH1 C:ARG165 1.8 41.7 1.0 F3 C:WIY310 2.1 0.5 1.0 F1 C:WIY310 2.1 0.5 1.0 C2 C:WIY310 2.4 0.5 1.0 CZ C:ARG165 2.7 41.7 1.0 H6 C:WIY310 2.8 0.5 1.0 H2 C:WIY310 2.8 0.5 1.0 H4 C:WIY310 2.8 0.5 1.0 C3 C:WIY310 2.9 0.5 1.0 CB C:HIS160 2.9 37.4 1.0 H1 C:WIY310 3.2 0.5 1.0 C4 C:WIY310 3.3 0.5 1.0 NE C:ARG165 3.3 41.7 1.0 CB C:GLU238 3.3 41.9 1.0 CG C:HIS160 3.5 37.4 1.0 OE1 C:GLU238 3.5 41.9 1.0 H5 C:WIY310 3.6 0.5 1.0 NH2 C:ARG165 3.6 41.7 1.0 CA C:GLU238 3.7 41.9 1.0 H3 C:WIY310 3.8 0.5 1.0 NH2 F:ARG206 3.9 41.1 1.0 CD2 C:HIS231 4.1 38.8 1.0 O C:GLU238 4.1 41.9 1.0 CA C:HIS160 4.1 37.4 1.0 NE2 C:HIS231 4.2 38.8 1.0 O C:HIS160 4.2 37.4 1.0 CD C:GLU238 4.2 41.9 1.0 CD2 C:HIS160 4.2 37.4 1.0 ND1 C:HIS160 4.3 37.4 1.0 NH1 F:ARG206 4.3 41.1 1.0 C C:HIS160 4.3 37.4 1.0 CG C:GLU238 4.4 41.9 1.0 C C:GLU238 4.4 41.9 1.0 O1 C:WIY310 4.5 0.5 1.0 CZ F:ARG206 4.6 41.1 1.0 CD C:ARG165 4.6 41.7 1.0 H7 C:WIY310 4.7 0.5 0.0 CG C:HIS231 4.9 38.8 1.0 CE1 C:HIS231 5.0 38.8 1.0

Fluorine binding site 3 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ C:F310 b:0.5 occ:1.00 F3 C:WIY310 0.0 0.5 1.0 C1 C:WIY310 1.3 0.5 1.0 CD2 C:HIS231 2.1 38.8 1.0 F2 C:WIY310 2.1 0.5 1.0 F1 C:WIY310 2.1 0.5 1.0 C2 C:WIY310 2.4 0.5 1.0 H1 C:WIY310 2.5 0.5 1.0 NE2 C:HIS231 2.5 38.8 1.0 H6 C:WIY310 2.7 0.5 1.0 NH1 C:ARG165 2.9 41.7 1.0 NH2 F:ARG206 3.0 41.1 1.0 CG C:HIS231 3.1 38.8 1.0 H2 C:WIY310 3.2 0.5 1.0 C3 C:WIY310 3.2 0.5 1.0 C4 C:WIY310 3.4 0.5 1.0 CE1 C:HIS231 3.5 38.8 1.0 H4 C:WIY310 3.8 0.5 1.0 ND1 C:HIS231 3.8 38.8 1.0 CA C:GLU238 3.8 41.9 1.0 H3 C:WIY310 3.9 0.5 1.0 CB C:HIS231 4.0 38.8 1.0 CU C:CU301 4.1 91.1 1.0 H7 C:WIY310 4.1 0.5 0.0 H5 C:WIY310 4.1 0.5 1.0 O1 C:WIY310 4.1 0.5 1.0 CZ C:ARG165 4.2 41.7 1.0 CZ F:ARG206 4.2 41.1 1.0 CB C:GLU238 4.3 41.9 1.0 C C:GLU238 4.3 41.9 1.0 O C:GLU237 4.3 46.5 1.0 O C:GLU238 4.4 41.9 1.0 NH1 F:ARG206 4.5 41.1 1.0 O C:LEU239 4.6 38.1 1.0 CE1 C:HIS245 4.7 36.6 1.0 NH2 C:ARG165 4.8 41.7 1.0 OE1 C:GLU238 4.9 41.9 1.0 CB C:HIS160 4.9 37.4 1.0 N C:LEU239 4.9 38.1 1.0 N C:GLU238 4.9 41.9 1.0

Fluorine binding site 4 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:F311 b:0.5 occ:1.00 F1 G:WIY311 0.0 0.5 1.0 C1 G:WIY311 1.3 0.5 1.0 CA G:GLU238 1.8 41.9 1.0 F3 G:WIY311 2.1 0.5 1.0 F2 G:WIY311 2.1 0.5 1.0 CB G:GLU238 2.2 41.9 1.0 C2 G:WIY311 2.4 0.5 1.0 H2 G:WIY311 2.4 0.5 1.0 C G:GLU238 2.5 41.9 1.0 O G:GLU238 2.7 41.9 1.0 H1 G:WIY311 2.7 0.5 1.0 NH1 G:ARG165 3.1 41.7 1.0 N G:GLU238 3.1 41.9 1.0 O G:GLU237 3.4 46.5 1.0 N G:LEU239 3.4 38.1 1.0 CG G:GLU238 3.4 41.9 1.0 NH2 J:ARG206 3.5 41.1 1.0 C G:GLU237 3.7 46.5 1.0 C3 G:WIY311 3.7 0.5 1.0 OE1 G:GLU238 3.8 41.9 1.0 CD G:GLU238 3.8 41.9 1.0 H4 G:WIY311 3.9 0.5 1.0 CD2 G:HIS231 4.0 38.8 1.0 H6 G:WIY311 4.2 0.5 1.0 CZ G:ARG165 4.2 41.7 1.0 O G:LEU239 4.3 38.1 1.0 NH1 J:ARG206 4.3 41.1 1.0 CZ J:ARG206 4.3 41.1 1.0 H3 G:WIY311 4.4 0.5 1.0 NE2 G:HIS231 4.5 38.8 1.0 C G:LEU239 4.5 38.1 1.0 CA G:LEU239 4.5 38.1 1.0 NE G:ARG165 4.5 41.7 1.0 C4 G:WIY311 4.6 0.5 1.0 OE2 G:GLU238 4.7 41.9 1.0 CB G:HIS160 4.8 37.4 1.0 NE2 G:GLN161 4.8 37.0 1.0

Fluorine binding site 5 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:F311 b:0.5 occ:1.00 F2 G:WIY311 0.0 0.5 1.0 C1 G:WIY311 1.3 0.5 1.0 NH1 G:ARG165 1.8 41.7 1.0 F3 G:WIY311 2.1 0.5 1.0 F1 G:WIY311 2.1 0.5 1.0 C2 G:WIY311 2.4 0.5 1.0 CZ G:ARG165 2.7 41.7 1.0 H6 G:WIY311 2.8 0.5 1.0 H2 G:WIY311 2.8 0.5 1.0 H4 G:WIY311 2.8 0.5 1.0 C3 G:WIY311 2.9 0.5 1.0 CB G:HIS160 2.9 37.4 1.0 H1 G:WIY311 3.2 0.5 1.0 C4 G:WIY311 3.3 0.5 1.0 NE G:ARG165 3.3 41.7 1.0 CB G:GLU238 3.3 41.9 1.0 CG G:HIS160 3.5 37.4 1.0 OE1 G:GLU238 3.5 41.9 1.0 H5 G:WIY311 3.6 0.5 1.0 NH2 G:ARG165 3.6 41.7 1.0 CA G:GLU238 3.7 41.9 1.0 H3 G:WIY311 3.8 0.5 1.0 NH2 J:ARG206 3.9 41.1 1.0 CD2 G:HIS231 4.1 38.8 1.0 O G:GLU238 4.1 41.9 1.0 CA G:HIS160 4.1 37.4 1.0 NE2 G:HIS231 4.2 38.8 1.0 O G:HIS160 4.2 37.4 1.0 CD G:GLU238 4.2 41.9 1.0 CD2 G:HIS160 4.2 37.4 1.0 ND1 G:HIS160 4.3 37.4 1.0 NH1 J:ARG206 4.3 41.1 1.0 C G:HIS160 4.3 37.4 1.0 CG G:GLU238 4.4 41.9 1.0 C G:GLU238 4.4 41.9 1.0 O1 G:WIY311 4.5 0.5 1.0 CZ J:ARG206 4.6 41.1 1.0 CD G:ARG165 4.6 41.7 1.0 H7 G:WIY311 4.7 0.5 0.0 CG G:HIS231 4.9 38.8 1.0 CE1 G:HIS231 5.0 38.8 1.0

Fluorine binding site 6 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:F311 b:0.5 occ:1.00 F3 G:WIY311 0.0 0.5 1.0 C1 G:WIY311 1.3 0.5 1.0 CD2 G:HIS231 2.1 38.8 1.0 F2 G:WIY311 2.1 0.5 1.0 F1 G:WIY311 2.1 0.5 1.0 C2 G:WIY311 2.4 0.5 1.0 H1 G:WIY311 2.5 0.5 1.0 NE2 G:HIS231 2.5 38.8 1.0 H6 G:WIY311 2.7 0.5 1.0 NH1 G:ARG165 2.9 41.7 1.0 NH2 J:ARG206 3.0 41.1 1.0 CG G:HIS231 3.1 38.8 1.0 H2 G:WIY311 3.2 0.5 1.0 C3 G:WIY311 3.2 0.5 1.0 C4 G:WIY311 3.4 0.5 1.0 CE1 G:HIS231 3.5 38.8 1.0 H4 G:WIY311 3.8 0.5 1.0 ND1 G:HIS231 3.8 38.8 1.0 CA G:GLU238 3.8 41.9 1.0 H3 G:WIY311 3.9 0.5 1.0 CB G:HIS231 4.0 38.8 1.0 CU G:CU302 4.1 91.1 1.0 H7 G:WIY311 4.1 0.5 0.0 H5 G:WIY311 4.1 0.5 1.0 O1 G:WIY311 4.1 0.5 1.0 CZ J:ARG206 4.2 41.1 1.0 CZ G:ARG165 4.2 41.7 1.0 CB G:GLU238 4.3 41.9 1.0 C G:GLU238 4.3 41.9 1.0 O G:GLU237 4.3 46.5 1.0 O G:GLU238 4.4 41.9 1.0 NH1 J:ARG206 4.5 41.1 1.0 O G:LEU239 4.6 38.1 1.0 CE1 G:HIS245 4.7 36.6 1.0 NH2 G:ARG165 4.8 41.7 1.0 OE1 G:GLU238 4.9 41.9 1.0 CB G:HIS160 4.9 37.4 1.0 N G:LEU239 4.9 38.1 1.0 N G:GLU238 4.9 41.9 1.0

Fluorine binding site 7 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ K:F311 b:0.5 occ:1.00 F1 K:WIY311 0.0 0.5 1.0 C1 K:WIY311 1.3 0.5 1.0 CA K:GLU238 1.8 41.9 1.0 F3 K:WIY311 2.1 0.5 1.0 F2 K:WIY311 2.1 0.5 1.0 CB K:GLU238 2.2 41.9 1.0 C2 K:WIY311 2.4 0.5 1.0 H2 K:WIY311 2.4 0.5 1.0 C K:GLU238 2.5 41.9 1.0 O K:GLU238 2.7 41.9 1.0 H1 K:WIY311 2.7 0.5 1.0 NH1 K:ARG165 3.1 41.7 1.0 N K:GLU238 3.1 41.9 1.0 O K:GLU237 3.4 46.5 1.0 N K:LEU239 3.4 38.1 1.0 CG K:GLU238 3.4 41.9 1.0 NH2 B:ARG206 3.6 41.1 1.0 C K:GLU237 3.7 46.5 1.0 C3 K:WIY311 3.7 0.5 1.0 OE1 K:GLU238 3.8 41.9 1.0 CD K:GLU238 3.8 41.9 1.0 H4 K:WIY311 3.9 0.5 1.0 CD2 K:HIS231 4.0 38.8 1.0 H6 K:WIY311 4.2 0.5 1.0 CZ K:ARG165 4.2 41.7 1.0 O K:LEU239 4.3 38.1 1.0 CZ B:ARG206 4.4 41.1 1.0 NH1 B:ARG206 4.4 41.1 1.0 H3 K:WIY311 4.4 0.5 1.0 NE2 K:HIS231 4.5 38.8 1.0 C K:LEU239 4.5 38.1 1.0 CA K:LEU239 4.5 38.1 1.0 NE K:ARG165 4.5 41.7 1.0 C4 K:WIY311 4.6 0.5 1.0 OE2 K:GLU238 4.7 41.9 1.0 CB K:HIS160 4.8 37.4 1.0 NE2 K:GLN161 4.8 37.0 1.0

Fluorine binding site 8 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ K:F311 b:0.5 occ:1.00 F2 K:WIY311 0.0 0.5 1.0 C1 K:WIY311 1.3 0.5 1.0 NH1 K:ARG165 1.8 41.7 1.0 F3 K:WIY311 2.1 0.5 1.0 F1 K:WIY311 2.1 0.5 1.0 C2 K:WIY311 2.4 0.5 1.0 CZ K:ARG165 2.7 41.7 1.0 H6 K:WIY311 2.8 0.5 1.0 H2 K:WIY311 2.8 0.5 1.0 H4 K:WIY311 2.8 0.5 1.0 C3 K:WIY311 2.9 0.5 1.0 CB K:HIS160 2.9 37.4 1.0 H1 K:WIY311 3.2 0.5 1.0 C4 K:WIY311 3.3 0.5 1.0 NE K:ARG165 3.3 41.7 1.0 CB K:GLU238 3.3 41.9 1.0 CG K:HIS160 3.5 37.4 1.0 OE1 K:GLU238 3.5 41.9 1.0 H5 K:WIY311 3.6 0.5 1.0 NH2 K:ARG165 3.6 41.7 1.0 CA K:GLU238 3.7 41.9 1.0 H3 K:WIY311 3.8 0.5 1.0 NH2 B:ARG206 3.9 41.1 1.0 CD2 K:HIS231 4.1 38.8 1.0 O K:GLU238 4.1 41.9 1.0 CA K:HIS160 4.1 37.4 1.0 NE2 K:HIS231 4.2 38.8 1.0 O K:HIS160 4.2 37.4 1.0 CD K:GLU238 4.2 41.9 1.0 CD2 K:HIS160 4.2 37.4 1.0 ND1 K:HIS160 4.3 37.4 1.0 NH1 B:ARG206 4.3 41.1 1.0 C K:HIS160 4.3 37.4 1.0 CG K:GLU238 4.4 41.9 1.0 C K:GLU238 4.4 41.9 1.0 O1 K:WIY311 4.5 0.5 1.0 CD K:ARG165 4.6 41.7 1.0 CZ B:ARG206 4.6 41.1 1.0 H7 K:WIY311 4.7 0.5 0.0 CG K:HIS231 4.9 38.8 1.0 CE1 K:HIS231 5.0 38.8 1.0

Fluorine binding site 9 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ K:F311 b:0.5 occ:1.00 F3 K:WIY311 0.0 0.5 1.0 C1 K:WIY311 1.3 0.5 1.0 CD2 K:HIS231 2.1 38.8 1.0 F2 K:WIY311 2.1 0.5 1.0 F1 K:WIY311 2.1 0.5 1.0 C2 K:WIY311 2.4 0.5 1.0 H1 K:WIY311 2.5 0.5 1.0 NE2 K:HIS231 2.5 38.8 1.0 H6 K:WIY311 2.7 0.5 1.0 NH1 K:ARG165 2.9 41.7 1.0 NH2 B:ARG206 3.0 41.1 1.0 CG K:HIS231 3.1 38.8 1.0 H2 K:WIY311 3.2 0.5 1.0 C3 K:WIY311 3.2 0.5 1.0 C4 K:WIY311 3.4 0.5 1.0 CE1 K:HIS231 3.5 38.8 1.0 H4 K:WIY311 3.8 0.5 1.0 ND1 K:HIS231 3.8 38.8 1.0 CA K:GLU238 3.8 41.9 1.0 H3 K:WIY311 3.9 0.5 1.0 CB K:HIS231 4.0 38.8 1.0 CU K:CU302 4.1 91.1 1.0 H7 K:WIY311 4.1 0.5 0.0 H5 K:WIY311 4.1 0.5 1.0 O1 K:WIY311 4.1 0.5 1.0 CZ K:ARG165 4.2 41.7 1.0 CZ B:ARG206 4.2 41.1 1.0 CB K:GLU238 4.3 41.9 1.0 C K:GLU238 4.3 41.9 1.0 O K:GLU237 4.3 46.5 1.0 O K:GLU238 4.4 41.9 1.0 NH1 B:ARG206 4.5 41.1 1.0 O K:LEU239 4.6 38.1 1.0 CE1 K:HIS245 4.7 36.6 1.0 NH2 K:ARG165 4.8 41.7 1.0 OE1 K:GLU238 4.9 41.9 1.0 CB K:HIS160 4.9 37.4 1.0 N K:LEU239 4.9 38.1 1.0 N K:GLU238 4.9 41.9 1.0

F.J.Tucci, R.J.Jodts, B.M.Hoffman, A.C.Rosenzweig. Product Analogue Binding Identifies the Copper Active Site of Particulate Methane Monooyxgenase Nat Catal 2023.
ISSN: ESSN 2520-1158