Fluorine in PDB 8tgd: Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Enzymatic activity of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
All present enzymatic activity of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA:
2.7.1.137;
2.7.1.153;
2.7.11.1;
Protein crystallography data
The structure of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA, PDB code: 8tgd
was solved by
B.Hilbert,
N.Brooijmans,
L.Buckbinder,
D.J.St.Jean Jr.,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.42 /
2.93
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.154,
124.502,
165.418,
90,
92.86,
90
|
R / Rfree (%)
|
21.8 /
25.2
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Fluorine atom in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
(pdb code 8tgd). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 14 binding sites of Fluorine where determined in the
Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA, PDB code: 8tgd:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 1 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1511
b:66.5
occ:1.00
|
F30
|
A:X3N1511
|
0.0
|
66.5
|
1.0
|
C29
|
A:X3N1511
|
1.3
|
65.9
|
1.0
|
F31
|
A:X3N1511
|
2.2
|
65.8
|
1.0
|
C23
|
A:X3N1511
|
2.4
|
65.3
|
1.0
|
HE2
|
A:MET772
|
2.9
|
80.3
|
0.0
|
HG
|
A:SER774
|
2.9
|
83.8
|
0.0
|
HE1
|
A:MET772
|
3.0
|
79.7
|
0.0
|
HD13
|
A:ILE800
|
3.0
|
65.3
|
0.0
|
HG21
|
A:ILE800
|
3.1
|
63.7
|
0.0
|
HG3
|
A:PRO778
|
3.3
|
77.3
|
0.0
|
N22
|
A:X3N1511
|
3.3
|
64.4
|
1.0
|
HG2
|
A:PRO778
|
3.3
|
77.8
|
0.0
|
CE
|
A:MET772
|
3.4
|
78.7
|
1.0
|
N19
|
A:X3N1511
|
3.4
|
62.1
|
1.0
|
C25
|
A:X3N1511
|
3.6
|
65.7
|
1.0
|
HB2
|
A:SER774
|
3.7
|
83.2
|
0.0
|
HB3
|
A:SER774
|
3.7
|
82.6
|
0.0
|
C20
|
A:X3N1511
|
3.7
|
62.8
|
1.0
|
OG
|
A:SER774
|
3.8
|
82.5
|
1.0
|
CG
|
A:PRO778
|
3.8
|
76.9
|
1.0
|
SD
|
A:MET772
|
3.9
|
79.8
|
1.0
|
CB
|
A:SER774
|
3.9
|
81.2
|
1.0
|
CD1
|
A:ILE800
|
4.1
|
65.3
|
1.0
|
CG2
|
A:ILE800
|
4.2
|
64.0
|
1.0
|
HE3
|
A:MET772
|
4.4
|
80.5
|
0.0
|
C27
|
A:X3N1511
|
4.4
|
65.6
|
1.0
|
HG23
|
A:ILE800
|
4.4
|
63.9
|
0.0
|
O26
|
A:X3N1511
|
4.5
|
66.0
|
1.0
|
HB2
|
A:PRO778
|
4.5
|
76.1
|
0.0
|
HD11
|
A:ILE800
|
4.6
|
65.5
|
0.0
|
HB3
|
A:MET772
|
4.6
|
79.7
|
0.0
|
HB2
|
A:MET772
|
4.6
|
79.2
|
0.0
|
C18
|
A:X3N1511
|
4.6
|
61.7
|
1.0
|
HD12
|
A:ILE800
|
4.6
|
64.8
|
0.0
|
HZ3
|
A:LYS802
|
4.7
|
80.7
|
0.0
|
HG12
|
A:ILE800
|
4.7
|
64.4
|
0.0
|
CB
|
A:PRO778
|
4.7
|
76.1
|
1.0
|
HD3
|
A:LYS802
|
4.7
|
73.7
|
0.0
|
HG22
|
A:ILE800
|
4.7
|
63.3
|
0.0
|
C10
|
A:X3N1511
|
4.8
|
61.0
|
1.0
|
CG1
|
A:ILE800
|
4.9
|
64.2
|
1.0
|
HD2
|
A:PRO778
|
4.9
|
77.5
|
0.0
|
CD
|
A:PRO778
|
4.9
|
76.0
|
1.0
|
C21
|
A:X3N1511
|
5.0
|
62.2
|
1.0
|
|
Fluorine binding site 2 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 2 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1511
b:65.8
occ:1.00
|
F31
|
A:X3N1511
|
0.0
|
65.8
|
1.0
|
C29
|
A:X3N1511
|
1.3
|
65.9
|
1.0
|
F30
|
A:X3N1511
|
2.2
|
66.5
|
1.0
|
C23
|
A:X3N1511
|
2.4
|
65.3
|
1.0
|
N22
|
A:X3N1511
|
2.7
|
64.4
|
1.0
|
HG21
|
A:ILE800
|
2.9
|
63.7
|
0.0
|
C25
|
A:X3N1511
|
3.1
|
65.7
|
1.0
|
HD13
|
A:ILE848
|
3.1
|
57.2
|
0.0
|
C27
|
A:X3N1511
|
3.1
|
65.6
|
1.0
|
HZ3
|
A:LYS802
|
3.2
|
80.7
|
0.0
|
HG3
|
A:PRO778
|
3.2
|
77.3
|
0.0
|
HD12
|
A:ILE848
|
3.3
|
57.1
|
0.0
|
O26
|
A:X3N1511
|
3.3
|
66.0
|
1.0
|
HE2
|
A:LYS802
|
3.4
|
77.3
|
0.0
|
C20
|
A:X3N1511
|
3.4
|
62.8
|
1.0
|
HD13
|
A:ILE800
|
3.5
|
65.3
|
0.0
|
HD3
|
A:LYS802
|
3.5
|
73.7
|
0.0
|
CD1
|
A:ILE848
|
3.7
|
58.5
|
1.0
|
CG2
|
A:ILE800
|
3.8
|
64.0
|
1.0
|
HG
|
A:SER774
|
3.9
|
83.8
|
0.0
|
N19
|
A:X3N1511
|
3.9
|
62.1
|
1.0
|
O28
|
A:X3N1511
|
4.0
|
66.1
|
1.0
|
HG22
|
A:ILE800
|
4.0
|
63.3
|
0.0
|
NZ
|
A:LYS802
|
4.0
|
81.2
|
1.0
|
CE
|
A:LYS802
|
4.1
|
78.4
|
1.0
|
CG
|
A:PRO778
|
4.1
|
76.9
|
1.0
|
HG2
|
A:PRO778
|
4.1
|
77.8
|
0.0
|
HG21
|
A:ILE848
|
4.2
|
57.7
|
0.0
|
HD11
|
A:ILE848
|
4.3
|
56.9
|
0.0
|
CD
|
A:LYS802
|
4.3
|
74.1
|
1.0
|
HB2
|
A:LYS802
|
4.3
|
65.5
|
0.0
|
HB
|
A:ILE848
|
4.4
|
56.9
|
0.0
|
HB2
|
A:PRO778
|
4.4
|
76.1
|
0.0
|
C21
|
A:X3N1511
|
4.4
|
62.2
|
1.0
|
CD1
|
A:ILE800
|
4.4
|
65.3
|
1.0
|
HZ1
|
A:LYS802
|
4.5
|
80.4
|
0.0
|
HD12
|
A:ILE800
|
4.5
|
64.8
|
0.0
|
HB
|
A:ILE800
|
4.5
|
62.8
|
0.0
|
HB3
|
A:PRO778
|
4.5
|
75.9
|
0.0
|
HG23
|
A:ILE800
|
4.5
|
63.9
|
0.0
|
CB
|
A:PRO778
|
4.6
|
76.1
|
1.0
|
O
|
A:HOH1604
|
4.6
|
60.2
|
1.0
|
HE1
|
A:MET772
|
4.7
|
79.7
|
0.0
|
HB3
|
A:SER774
|
4.7
|
82.6
|
0.0
|
CB
|
A:ILE800
|
4.7
|
63.8
|
1.0
|
HZ2
|
A:LYS802
|
4.7
|
80.8
|
0.0
|
OG
|
A:SER774
|
4.8
|
82.5
|
1.0
|
CG1
|
A:ILE848
|
4.9
|
57.9
|
1.0
|
HD2
|
A:LYS802
|
4.9
|
73.8
|
0.0
|
HE2
|
A:MET772
|
5.0
|
80.3
|
0.0
|
C18
|
A:X3N1511
|
5.0
|
61.7
|
1.0
|
CB
|
A:ILE848
|
5.0
|
58.3
|
1.0
|
|
Fluorine binding site 3 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 3 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1512
b:69.7
occ:1.00
|
F1
|
A:ZWE1512
|
0.0
|
69.7
|
1.0
|
C5
|
A:ZWE1512
|
1.3
|
69.7
|
1.0
|
C6
|
A:ZWE1512
|
2.3
|
69.6
|
1.0
|
C4
|
A:ZWE1512
|
2.4
|
70.2
|
1.0
|
HZ
|
A:PHE937
|
2.4
|
80.3
|
0.0
|
HD13
|
A:LEU911
|
2.7
|
72.8
|
0.0
|
HZ
|
A:PHE1002
|
2.9
|
68.0
|
0.0
|
O1
|
A:ZWE1512
|
2.9
|
70.8
|
1.0
|
HB3
|
A:LEU911
|
3.2
|
72.0
|
0.0
|
HD22
|
A:LEU911
|
3.2
|
73.6
|
0.0
|
HG23
|
A:THR813
|
3.3
|
56.8
|
0.0
|
HE1
|
A:PHE1002
|
3.3
|
67.5
|
0.0
|
CZ
|
A:PHE937
|
3.4
|
79.8
|
1.0
|
HA
|
A:THR813
|
3.5
|
55.6
|
0.0
|
C7
|
A:ZWE1512
|
3.6
|
69.9
|
1.0
|
C9
|
A:ZWE1512
|
3.6
|
70.4
|
1.0
|
CZ
|
A:PHE1002
|
3.7
|
67.4
|
1.0
|
OG1
|
A:THR813
|
3.7
|
57.9
|
1.0
|
CD1
|
A:LEU911
|
3.8
|
72.1
|
1.0
|
CE1
|
A:PHE1002
|
3.9
|
67.7
|
1.0
|
HE2
|
A:PHE937
|
4.0
|
81.6
|
0.0
|
HG13
|
A:ILE816
|
4.0
|
57.7
|
0.0
|
CD2
|
A:LEU911
|
4.1
|
72.3
|
1.0
|
CB
|
A:LEU911
|
4.1
|
70.5
|
1.0
|
C8
|
A:ZWE1512
|
4.1
|
70.0
|
1.0
|
CE2
|
A:PHE937
|
4.2
|
80.2
|
1.0
|
CG2
|
A:THR813
|
4.2
|
56.9
|
1.0
|
C3
|
A:ZWE1512
|
4.2
|
71.5
|
1.0
|
CG
|
A:LEU911
|
4.2
|
71.7
|
1.0
|
HE1
|
A:PHE937
|
4.3
|
80.2
|
0.0
|
CB
|
A:THR813
|
4.3
|
56.8
|
1.0
|
HD11
|
A:LEU911
|
4.3
|
73.0
|
0.0
|
CE1
|
A:PHE937
|
4.3
|
80.2
|
1.0
|
HD11
|
A:ILE913
|
4.3
|
74.5
|
0.0
|
CA
|
A:THR813
|
4.3
|
56.4
|
1.0
|
HD12
|
A:LEU911
|
4.4
|
73.2
|
0.0
|
HG1
|
A:THR813
|
4.5
|
56.9
|
0.0
|
F5
|
A:ZWE1512
|
4.5
|
73.7
|
1.0
|
HG21
|
A:THR813
|
4.5
|
56.7
|
0.0
|
C2
|
A:ZWE1512
|
4.6
|
71.1
|
1.0
|
HG
|
A:LEU812
|
4.6
|
58.2
|
0.0
|
F2
|
A:ZWE1512
|
4.6
|
70.3
|
1.0
|
HD21
|
A:LEU911
|
4.7
|
73.7
|
0.0
|
HB2
|
A:LEU911
|
4.7
|
72.4
|
0.0
|
HB
|
A:ILE816
|
4.7
|
56.8
|
0.0
|
HG21
|
A:ILE816
|
4.7
|
58.2
|
0.0
|
CE2
|
A:PHE1002
|
4.9
|
67.7
|
1.0
|
HD23
|
A:LEU911
|
4.9
|
74.4
|
0.0
|
N
|
A:THR813
|
4.9
|
56.6
|
1.0
|
CG1
|
A:ILE816
|
4.9
|
57.9
|
1.0
|
|
Fluorine binding site 4 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 4 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1512
b:70.3
occ:1.00
|
F2
|
A:ZWE1512
|
0.0
|
70.3
|
1.0
|
C7
|
A:ZWE1512
|
1.3
|
69.9
|
1.0
|
HD23
|
A:LEU812
|
2.2
|
58.5
|
0.0
|
C6
|
A:ZWE1512
|
2.3
|
69.6
|
1.0
|
C8
|
A:ZWE1512
|
2.3
|
70.0
|
1.0
|
HG3
|
A:GLN809
|
2.4
|
71.5
|
0.0
|
HA
|
A:GLN809
|
2.7
|
65.0
|
0.0
|
HE1
|
A:MET1010
|
2.8
|
82.2
|
0.0
|
HB3
|
A:LEU812
|
2.9
|
56.4
|
0.0
|
HE2
|
A:MET1010
|
3.2
|
82.5
|
0.0
|
CD2
|
A:LEU812
|
3.2
|
59.6
|
1.0
|
CE
|
A:MET1010
|
3.4
|
83.7
|
1.0
|
CG
|
A:GLN809
|
3.5
|
72.3
|
1.0
|
C5
|
A:ZWE1512
|
3.6
|
69.7
|
1.0
|
C9
|
A:ZWE1512
|
3.6
|
70.4
|
1.0
|
HD12
|
A:LEU1013
|
3.6
|
90.0
|
0.0
|
CA
|
A:GLN809
|
3.6
|
66.6
|
1.0
|
HD11
|
A:LEU1013
|
3.7
|
90.4
|
0.0
|
HG
|
A:LEU812
|
3.7
|
58.2
|
0.0
|
HD22
|
A:LEU812
|
3.8
|
58.2
|
0.0
|
HE3
|
A:MET1010
|
3.8
|
82.0
|
0.0
|
O
|
A:GLN809
|
3.8
|
65.7
|
1.0
|
CG
|
A:LEU812
|
3.8
|
59.3
|
1.0
|
HD21
|
A:LEU812
|
3.8
|
58.8
|
0.0
|
CB
|
A:LEU812
|
3.8
|
58.0
|
1.0
|
HE1
|
A:PHE1002
|
3.9
|
67.5
|
0.0
|
CB
|
A:GLN809
|
3.9
|
68.8
|
1.0
|
HG2
|
A:GLN809
|
3.9
|
71.4
|
0.0
|
C4
|
A:ZWE1512
|
4.0
|
70.2
|
1.0
|
HB2
|
A:GLN809
|
4.0
|
67.5
|
0.0
|
HG1
|
A:THR813
|
4.1
|
56.9
|
0.0
|
CD1
|
A:LEU1013
|
4.1
|
90.6
|
1.0
|
C
|
A:GLN809
|
4.2
|
65.8
|
1.0
|
HB2
|
A:LEU812
|
4.3
|
56.1
|
0.0
|
OG1
|
A:THR813
|
4.4
|
57.9
|
1.0
|
HD11
|
A:LEU938
|
4.4
|
86.8
|
0.0
|
HB2
|
A:GLU1012
|
4.4
|
92.8
|
0.0
|
CD
|
A:GLN809
|
4.5
|
77.0
|
1.0
|
HG
|
A:LEU1013
|
4.5
|
90.3
|
0.0
|
H
|
A:THR813
|
4.5
|
55.1
|
0.0
|
F1
|
A:ZWE1512
|
4.6
|
69.7
|
1.0
|
HD12
|
A:LEU938
|
4.7
|
86.5
|
0.0
|
N
|
A:GLN809
|
4.7
|
66.5
|
1.0
|
HZ
|
A:PHE937
|
4.7
|
80.3
|
0.0
|
HE21
|
A:GLN809
|
4.8
|
77.3
|
0.0
|
O
|
A:ARG808
|
4.8
|
66.8
|
1.0
|
H
|
A:LEU812
|
4.9
|
57.0
|
0.0
|
N
|
A:THR813
|
4.9
|
56.6
|
1.0
|
CE1
|
A:PHE1002
|
4.9
|
67.7
|
1.0
|
CG
|
A:LEU1013
|
4.9
|
90.1
|
1.0
|
C2
|
A:ZWE1512
|
4.9
|
71.1
|
1.0
|
HD1
|
A:PHE1002
|
5.0
|
67.1
|
0.0
|
HD13
|
A:LEU1013
|
5.0
|
90.3
|
0.0
|
HB3
|
A:GLN809
|
5.0
|
67.4
|
0.0
|
CA
|
A:LEU812
|
5.0
|
58.2
|
1.0
|
SD
|
A:MET1010
|
5.0
|
84.3
|
1.0
|
|
Fluorine binding site 5 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 5 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1512
b:73.6
occ:1.00
|
F3
|
A:ZWE1512
|
0.0
|
73.6
|
1.0
|
C16
|
A:ZWE1512
|
1.3
|
73.5
|
1.0
|
F4
|
A:ZWE1512
|
2.1
|
73.8
|
1.0
|
F5
|
A:ZWE1512
|
2.2
|
73.7
|
1.0
|
C10
|
A:ZWE1512
|
2.4
|
72.9
|
1.0
|
C3
|
A:ZWE1512
|
2.8
|
71.5
|
1.0
|
HB
|
A:ILE1022
|
2.9
|
93.5
|
0.0
|
HA
|
A:ILE1019
|
3.1
|
95.6
|
0.0
|
O1
|
A:ZWE1512
|
3.2
|
70.8
|
1.0
|
HG23
|
A:ILE1019
|
3.3
|
95.8
|
0.0
|
CE2
|
A:PHE1002
|
3.4
|
67.7
|
1.0
|
HD12
|
A:ILE1022
|
3.5
|
94.5
|
0.0
|
HE2
|
A:PHE1002
|
3.5
|
69.2
|
0.0
|
N1
|
A:ZWE1512
|
3.6
|
73.9
|
1.0
|
C2
|
A:ZWE1512
|
3.7
|
71.1
|
1.0
|
CD2
|
A:PHE1002
|
3.7
|
67.1
|
1.0
|
CZ
|
A:PHE1002
|
3.8
|
67.4
|
1.0
|
H
|
A:ILE1022
|
3.9
|
94.5
|
0.0
|
HD2
|
A:PHE1002
|
4.0
|
68.8
|
0.0
|
CB
|
A:ILE1022
|
4.0
|
90.0
|
1.0
|
O
|
A:ILE1019
|
4.1
|
93.2
|
1.0
|
HZ
|
A:PHE1002
|
4.1
|
68.0
|
0.0
|
CA
|
A:ILE1019
|
4.1
|
92.8
|
1.0
|
C4
|
A:ZWE1512
|
4.1
|
70.2
|
1.0
|
HG22
|
A:ILE1019
|
4.2
|
96.8
|
0.0
|
CG2
|
A:ILE1019
|
4.2
|
93.3
|
1.0
|
HG21
|
A:ILE1022
|
4.3
|
93.9
|
0.0
|
O
|
A:ASP1018
|
4.3
|
94.4
|
1.0
|
CG
|
A:PHE1002
|
4.3
|
66.6
|
1.0
|
CE1
|
A:PHE1002
|
4.4
|
67.7
|
1.0
|
CD1
|
A:ILE1022
|
4.4
|
91.9
|
1.0
|
C1
|
A:ZWE1512
|
4.4
|
71.2
|
1.0
|
C9
|
A:ZWE1512
|
4.4
|
70.4
|
1.0
|
HD22
|
A:LEU911
|
4.5
|
73.6
|
0.0
|
CD1
|
A:PHE1002
|
4.6
|
67.1
|
1.0
|
HA
|
A:LEU911
|
4.6
|
73.1
|
0.0
|
HG12
|
A:ILE1019
|
4.6
|
95.4
|
0.0
|
C
|
A:ILE1019
|
4.6
|
92.9
|
1.0
|
HD21
|
A:LEU1013
|
4.6
|
91.4
|
0.0
|
CG2
|
A:ILE1022
|
4.6
|
90.2
|
1.0
|
N
|
A:ILE1022
|
4.6
|
90.2
|
1.0
|
CG1
|
A:ILE1022
|
4.6
|
90.8
|
1.0
|
HB3
|
A:TYR1021
|
4.7
|
95.2
|
0.0
|
CB
|
A:ILE1019
|
4.7
|
92.9
|
1.0
|
HD23
|
A:LEU911
|
4.8
|
74.4
|
0.0
|
HD13
|
A:ILE1022
|
4.8
|
95.0
|
0.0
|
C11
|
A:ZWE1512
|
4.8
|
75.0
|
1.0
|
HG13
|
A:ILE1022
|
4.8
|
94.6
|
0.0
|
HG22
|
A:ILE1022
|
4.8
|
94.5
|
0.0
|
CA
|
A:ILE1022
|
4.8
|
90.0
|
1.0
|
HD2
|
A:TYR1021
|
4.9
|
97.3
|
0.0
|
HE1
|
A:PHE1002
|
5.0
|
67.5
|
0.0
|
|
Fluorine binding site 6 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 6 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1512
b:73.8
occ:1.00
|
F4
|
A:ZWE1512
|
0.0
|
73.8
|
1.0
|
C16
|
A:ZWE1512
|
1.3
|
73.5
|
1.0
|
F3
|
A:ZWE1512
|
2.1
|
73.6
|
1.0
|
F5
|
A:ZWE1512
|
2.1
|
73.7
|
1.0
|
HB
|
A:ILE1022
|
2.3
|
93.5
|
0.0
|
C10
|
A:ZWE1512
|
2.4
|
72.9
|
1.0
|
H
|
A:ILE1022
|
2.6
|
94.5
|
0.0
|
HD2
|
A:TYR1021
|
2.8
|
97.3
|
0.0
|
N1
|
A:ZWE1512
|
2.9
|
73.9
|
1.0
|
HB3
|
A:TYR1021
|
2.9
|
95.2
|
0.0
|
N
|
A:ILE1022
|
3.0
|
90.2
|
1.0
|
CB
|
A:ILE1022
|
3.2
|
90.0
|
1.0
|
CA
|
A:ILE1022
|
3.4
|
90.0
|
1.0
|
HA
|
A:ILE1022
|
3.4
|
94.6
|
0.0
|
C3
|
A:ZWE1512
|
3.7
|
71.5
|
1.0
|
O
|
A:ILE1019
|
3.7
|
93.2
|
1.0
|
C
|
A:TYR1021
|
3.8
|
90.8
|
1.0
|
HA
|
A:ILE1019
|
3.8
|
95.6
|
0.0
|
C11
|
A:ZWE1512
|
3.8
|
75.0
|
1.0
|
CD2
|
A:TYR1021
|
3.8
|
93.2
|
1.0
|
HD12
|
A:ILE1022
|
3.9
|
94.5
|
0.0
|
HA
|
A:LEU911
|
3.9
|
73.1
|
0.0
|
CB
|
A:TYR1021
|
3.9
|
91.0
|
1.0
|
HG13
|
A:ILE1022
|
3.9
|
94.6
|
0.0
|
CG1
|
A:ILE1022
|
4.1
|
90.8
|
1.0
|
O1
|
A:ZWE1512
|
4.1
|
70.8
|
1.0
|
O2
|
A:ZWE1512
|
4.1
|
75.3
|
1.0
|
CA
|
A:TYR1021
|
4.2
|
91.0
|
1.0
|
CG2
|
A:ILE1022
|
4.3
|
90.2
|
1.0
|
H
|
A:TYR1021
|
4.3
|
95.8
|
0.0
|
CG
|
A:TYR1021
|
4.4
|
91.9
|
1.0
|
HG22
|
A:ILE1022
|
4.4
|
94.5
|
0.0
|
O
|
A:ILE910
|
4.4
|
69.2
|
1.0
|
C
|
A:ILE1019
|
4.4
|
92.9
|
1.0
|
O
|
A:ASP1018
|
4.5
|
94.4
|
1.0
|
N
|
A:TYR1021
|
4.5
|
91.1
|
1.0
|
HG21
|
A:ILE1022
|
4.5
|
93.9
|
0.0
|
CD1
|
A:ILE1022
|
4.5
|
91.9
|
1.0
|
CA
|
A:ILE1019
|
4.6
|
92.8
|
1.0
|
O
|
A:TYR1021
|
4.6
|
91.2
|
1.0
|
O
|
A:LEU911
|
4.7
|
72.1
|
1.0
|
HG23
|
A:ILE1019
|
4.7
|
95.8
|
0.0
|
HZ1
|
A:LYS941
|
4.7
|
121.1
|
0.0
|
HB2
|
A:TYR1021
|
4.7
|
96.0
|
0.0
|
N2
|
A:ZWE1512
|
4.8
|
75.7
|
1.0
|
HG22
|
A:ILE1019
|
4.8
|
96.8
|
0.0
|
HD23
|
A:LEU911
|
4.8
|
74.4
|
0.0
|
C2
|
A:ZWE1512
|
4.8
|
71.1
|
1.0
|
CA
|
A:LEU911
|
4.9
|
70.5
|
1.0
|
HE2
|
A:PHE1002
|
4.9
|
69.2
|
0.0
|
CE2
|
A:TYR1021
|
4.9
|
94.3
|
1.0
|
C
|
A:ILE1022
|
4.9
|
90.2
|
1.0
|
C
|
A:LEU911
|
5.0
|
71.5
|
1.0
|
|
Fluorine binding site 7 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 7 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1512
b:73.7
occ:1.00
|
F5
|
A:ZWE1512
|
0.0
|
73.7
|
1.0
|
C16
|
A:ZWE1512
|
1.4
|
73.5
|
1.0
|
F4
|
A:ZWE1512
|
2.1
|
73.8
|
1.0
|
F3
|
A:ZWE1512
|
2.2
|
73.6
|
1.0
|
HA
|
A:LEU911
|
2.4
|
73.1
|
0.0
|
C10
|
A:ZWE1512
|
2.5
|
72.9
|
1.0
|
O1
|
A:ZWE1512
|
2.7
|
70.8
|
1.0
|
N1
|
A:ZWE1512
|
2.7
|
73.9
|
1.0
|
C3
|
A:ZWE1512
|
3.0
|
71.5
|
1.0
|
HD22
|
A:LEU911
|
3.1
|
73.6
|
0.0
|
HD23
|
A:LEU911
|
3.2
|
74.4
|
0.0
|
HD12
|
A:ILE1022
|
3.3
|
94.5
|
0.0
|
HB
|
A:ILE1022
|
3.3
|
93.5
|
0.0
|
CA
|
A:LEU911
|
3.4
|
70.5
|
1.0
|
HB3
|
A:LEU911
|
3.5
|
72.0
|
0.0
|
O
|
A:LEU911
|
3.6
|
72.1
|
1.0
|
CD2
|
A:LEU911
|
3.6
|
72.3
|
1.0
|
HE2
|
A:PHE1002
|
3.8
|
69.2
|
0.0
|
C
|
A:LEU911
|
3.9
|
71.5
|
1.0
|
HD2
|
A:TYR1021
|
3.9
|
97.3
|
0.0
|
HZ
|
A:PHE1002
|
3.9
|
68.0
|
0.0
|
CB
|
A:LEU911
|
3.9
|
70.5
|
1.0
|
C4
|
A:ZWE1512
|
3.9
|
70.2
|
1.0
|
HG13
|
A:ILE1022
|
4.1
|
94.6
|
0.0
|
C11
|
A:ZWE1512
|
4.1
|
75.0
|
1.0
|
CE2
|
A:PHE1002
|
4.1
|
67.7
|
1.0
|
O
|
A:ILE910
|
4.1
|
69.2
|
1.0
|
CZ
|
A:PHE1002
|
4.2
|
67.4
|
1.0
|
CD1
|
A:ILE1022
|
4.2
|
91.9
|
1.0
|
CB
|
A:ILE1022
|
4.3
|
90.0
|
1.0
|
C2
|
A:ZWE1512
|
4.3
|
71.1
|
1.0
|
CG1
|
A:ILE1022
|
4.4
|
90.8
|
1.0
|
CG
|
A:LEU911
|
4.4
|
71.7
|
1.0
|
N
|
A:LEU911
|
4.5
|
69.9
|
1.0
|
F1
|
A:ZWE1512
|
4.5
|
69.7
|
1.0
|
HD21
|
A:LEU911
|
4.5
|
73.7
|
0.0
|
HA
|
A:ILE1022
|
4.6
|
94.6
|
0.0
|
H
|
A:ILE1022
|
4.6
|
94.5
|
0.0
|
HE2
|
A:PHE937
|
4.6
|
81.6
|
0.0
|
C5
|
A:ZWE1512
|
4.7
|
69.7
|
1.0
|
HD11
|
A:ILE1022
|
4.7
|
94.9
|
0.0
|
C
|
A:ILE910
|
4.7
|
69.5
|
1.0
|
C9
|
A:ZWE1512
|
4.8
|
70.4
|
1.0
|
HB3
|
A:TYR1021
|
4.8
|
95.2
|
0.0
|
N2
|
A:ZWE1512
|
4.8
|
75.7
|
1.0
|
O2
|
A:ZWE1512
|
4.8
|
75.3
|
1.0
|
CA
|
A:ILE1022
|
4.8
|
90.0
|
1.0
|
N
|
A:ILE1022
|
4.9
|
90.2
|
1.0
|
HB2
|
A:LEU911
|
4.9
|
72.4
|
0.0
|
CD2
|
A:TYR1021
|
5.0
|
93.2
|
1.0
|
CD2
|
A:PHE1002
|
5.0
|
67.1
|
1.0
|
|
Fluorine binding site 8 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 8 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1504
b:111.1
occ:1.00
|
F30
|
C:X3N1504
|
0.0
|
111.1
|
1.0
|
C29
|
C:X3N1504
|
1.3
|
111.0
|
1.0
|
F31
|
C:X3N1504
|
2.1
|
111.2
|
1.0
|
C23
|
C:X3N1504
|
2.4
|
110.8
|
1.0
|
HG
|
C:SER774
|
2.9
|
121.2
|
0.0
|
HD13
|
C:ILE800
|
3.0
|
99.6
|
0.0
|
HE1
|
C:MET772
|
3.1
|
118.1
|
0.0
|
HG21
|
C:ILE800
|
3.1
|
97.2
|
0.0
|
HG3
|
C:PRO778
|
3.3
|
113.5
|
0.0
|
N22
|
C:X3N1504
|
3.3
|
110.6
|
1.0
|
HG2
|
C:PRO778
|
3.3
|
113.8
|
0.0
|
HE2
|
C:MET772
|
3.3
|
119.5
|
0.0
|
N19
|
C:X3N1504
|
3.4
|
110.1
|
1.0
|
CE
|
C:MET772
|
3.5
|
115.4
|
1.0
|
C25
|
C:X3N1504
|
3.6
|
110.8
|
1.0
|
HB2
|
C:SER774
|
3.7
|
120.5
|
0.0
|
SD
|
C:MET772
|
3.7
|
116.5
|
1.0
|
HB3
|
C:SER774
|
3.7
|
119.5
|
0.0
|
C20
|
C:X3N1504
|
3.7
|
110.3
|
1.0
|
CG
|
C:PRO778
|
3.8
|
111.3
|
1.0
|
OG
|
C:SER774
|
3.8
|
116.5
|
1.0
|
CB
|
C:SER774
|
4.0
|
114.8
|
1.0
|
CD1
|
C:ILE800
|
4.1
|
99.1
|
1.0
|
CG2
|
C:ILE800
|
4.2
|
97.3
|
1.0
|
C27
|
C:X3N1504
|
4.4
|
111.0
|
1.0
|
HG23
|
C:ILE800
|
4.4
|
97.2
|
0.0
|
HB3
|
C:MET772
|
4.5
|
116.0
|
0.0
|
O26
|
C:X3N1504
|
4.5
|
111.0
|
1.0
|
HB2
|
C:PRO778
|
4.5
|
111.2
|
0.0
|
HD11
|
C:ILE800
|
4.6
|
99.7
|
0.0
|
HE3
|
C:MET772
|
4.6
|
119.0
|
0.0
|
C18
|
C:X3N1504
|
4.6
|
109.8
|
1.0
|
HD12
|
C:ILE800
|
4.6
|
98.5
|
0.0
|
HB2
|
C:MET772
|
4.6
|
114.9
|
0.0
|
HZ3
|
C:LYS802
|
4.7
|
118.3
|
0.0
|
HG12
|
C:ILE800
|
4.7
|
97.9
|
0.0
|
CB
|
C:PRO778
|
4.7
|
110.6
|
1.0
|
HD3
|
C:LYS802
|
4.7
|
110.7
|
0.0
|
HG22
|
C:ILE800
|
4.7
|
96.3
|
0.0
|
C10
|
C:X3N1504
|
4.8
|
109.6
|
1.0
|
CG1
|
C:ILE800
|
4.9
|
97.8
|
1.0
|
HD2
|
C:PRO778
|
4.9
|
114.2
|
0.0
|
CD
|
C:PRO778
|
4.9
|
110.1
|
1.0
|
CB
|
C:MET772
|
4.9
|
111.0
|
1.0
|
C21
|
C:X3N1504
|
5.0
|
110.0
|
1.0
|
|
Fluorine binding site 9 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 9 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1504
b:111.2
occ:1.00
|
F31
|
C:X3N1504
|
0.0
|
111.2
|
1.0
|
C29
|
C:X3N1504
|
1.3
|
111.0
|
1.0
|
F30
|
C:X3N1504
|
2.1
|
111.1
|
1.0
|
C23
|
C:X3N1504
|
2.4
|
110.8
|
1.0
|
N22
|
C:X3N1504
|
2.6
|
110.6
|
1.0
|
HG21
|
C:ILE800
|
2.8
|
97.2
|
0.0
|
C25
|
C:X3N1504
|
3.1
|
110.8
|
1.0
|
C27
|
C:X3N1504
|
3.1
|
111.0
|
1.0
|
HD13
|
C:ILE848
|
3.1
|
101.4
|
0.0
|
HZ3
|
C:LYS802
|
3.2
|
118.3
|
0.0
|
HG3
|
C:PRO778
|
3.2
|
113.5
|
0.0
|
HD12
|
C:ILE848
|
3.3
|
100.9
|
0.0
|
O26
|
C:X3N1504
|
3.3
|
111.0
|
1.0
|
HE2
|
C:LYS802
|
3.4
|
113.9
|
0.0
|
C20
|
C:X3N1504
|
3.4
|
110.3
|
1.0
|
HD13
|
C:ILE800
|
3.5
|
99.6
|
0.0
|
HD3
|
C:LYS802
|
3.5
|
110.7
|
0.0
|
CD1
|
C:ILE848
|
3.7
|
102.5
|
1.0
|
CG2
|
C:ILE800
|
3.8
|
97.3
|
1.0
|
HG
|
C:SER774
|
3.9
|
121.2
|
0.0
|
N19
|
C:X3N1504
|
3.9
|
110.1
|
1.0
|
O28
|
C:X3N1504
|
4.0
|
111.2
|
1.0
|
HG22
|
C:ILE800
|
4.0
|
96.3
|
0.0
|
NZ
|
C:LYS802
|
4.0
|
116.9
|
1.0
|
HG2
|
C:PRO778
|
4.1
|
113.8
|
0.0
|
CG
|
C:PRO778
|
4.1
|
111.3
|
1.0
|
CE
|
C:LYS802
|
4.1
|
114.2
|
1.0
|
HG21
|
C:ILE848
|
4.2
|
99.3
|
0.0
|
HD11
|
C:ILE848
|
4.3
|
100.9
|
0.0
|
CD
|
C:LYS802
|
4.3
|
109.8
|
1.0
|
HB2
|
C:LYS802
|
4.3
|
99.4
|
0.0
|
HB
|
C:ILE848
|
4.4
|
98.0
|
0.0
|
HB2
|
C:PRO778
|
4.4
|
111.2
|
0.0
|
C21
|
C:X3N1504
|
4.4
|
110.0
|
1.0
|
CD1
|
C:ILE800
|
4.4
|
99.1
|
1.0
|
HZ1
|
C:LYS802
|
4.5
|
118.0
|
0.0
|
HD12
|
C:ILE800
|
4.5
|
98.5
|
0.0
|
HB
|
C:ILE800
|
4.5
|
95.2
|
0.0
|
HB3
|
C:PRO778
|
4.5
|
111.3
|
0.0
|
HG23
|
C:ILE800
|
4.5
|
97.2
|
0.0
|
CB
|
C:PRO778
|
4.6
|
110.6
|
1.0
|
HB3
|
C:SER774
|
4.7
|
119.5
|
0.0
|
CB
|
C:ILE800
|
4.7
|
96.8
|
1.0
|
HZ2
|
C:LYS802
|
4.7
|
119.0
|
0.0
|
HE1
|
C:MET772
|
4.8
|
118.1
|
0.0
|
OG
|
C:SER774
|
4.8
|
116.5
|
1.0
|
CG1
|
C:ILE848
|
4.9
|
101.3
|
1.0
|
HD2
|
C:LYS802
|
4.9
|
111.4
|
0.0
|
C18
|
C:X3N1504
|
5.0
|
109.8
|
1.0
|
|
Fluorine binding site 10 out
of 14 in 8tgd
Go back to
Fluorine Binding Sites List in 8tgd
Fluorine binding site 10 out
of 14 in the Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Stx-478, A Mutant-Selective, Allosteric Inhibitor Bound to H1047R PI3KALPHA within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1505
b:108.7
occ:1.00
|
F1
|
C:ZWE1505
|
0.0
|
108.7
|
1.0
|
C5
|
C:ZWE1505
|
1.3
|
108.8
|
1.0
|
C6
|
C:ZWE1505
|
2.3
|
108.7
|
1.0
|
C4
|
C:ZWE1505
|
2.3
|
109.3
|
1.0
|
HZ
|
C:PHE937
|
2.4
|
133.4
|
0.0
|
HD13
|
C:LEU911
|
2.7
|
122.7
|
0.0
|
O1
|
C:ZWE1505
|
2.9
|
109.7
|
1.0
|
HZ
|
C:PHE1002
|
2.9
|
108.9
|
0.0
|
HB3
|
C:LEU911
|
3.2
|
122.9
|
0.0
|
HD22
|
C:LEU911
|
3.2
|
123.3
|
0.0
|
HG23
|
C:THR813
|
3.3
|
88.9
|
0.0
|
HE1
|
C:PHE1002
|
3.4
|
108.5
|
0.0
|
CZ
|
C:PHE937
|
3.4
|
131.0
|
1.0
|
HA
|
C:THR813
|
3.5
|
86.3
|
0.0
|
C7
|
C:ZWE1505
|
3.6
|
108.7
|
1.0
|
C9
|
C:ZWE1505
|
3.6
|
109.3
|
1.0
|
CZ
|
C:PHE1002
|
3.7
|
108.3
|
1.0
|
OG1
|
C:THR813
|
3.7
|
88.8
|
1.0
|
CD1
|
C:LEU911
|
3.8
|
121.5
|
1.0
|
CE1
|
C:PHE1002
|
3.9
|
108.6
|
1.0
|
HE2
|
C:PHE937
|
4.0
|
135.8
|
0.0
|
HG13
|
C:ILE816
|
4.0
|
90.7
|
0.0
|
CD2
|
C:LEU911
|
4.1
|
121.5
|
1.0
|
CB
|
C:LEU911
|
4.1
|
119.6
|
1.0
|
C8
|
C:ZWE1505
|
4.1
|
109.0
|
1.0
|
CE2
|
C:PHE937
|
4.2
|
131.2
|
1.0
|
CG2
|
C:THR813
|
4.2
|
88.5
|
1.0
|
C3
|
C:ZWE1505
|
4.2
|
110.1
|
1.0
|
CG
|
C:LEU911
|
4.2
|
120.9
|
1.0
|
CB
|
C:THR813
|
4.3
|
88.2
|
1.0
|
HD11
|
C:LEU911
|
4.3
|
122.2
|
0.0
|
HE1
|
C:PHE937
|
4.3
|
133.2
|
0.0
|
CA
|
C:THR813
|
4.3
|
87.5
|
1.0
|
HD11
|
C:ILE913
|
4.4
|
125.2
|
0.0
|
CE1
|
C:PHE937
|
4.4
|
131.1
|
1.0
|
HD12
|
C:LEU911
|
4.4
|
123.3
|
0.0
|
HG1
|
C:THR813
|
4.5
|
88.2
|
0.0
|
F5
|
C:ZWE1505
|
4.5
|
111.2
|
1.0
|
HG21
|
C:THR813
|
4.5
|
89.3
|
0.0
|
C2
|
C:ZWE1505
|
4.6
|
109.6
|
1.0
|
HG
|
C:LEU812
|
4.6
|
88.5
|
0.0
|
F2
|
C:ZWE1505
|
4.6
|
108.7
|
1.0
|
HD21
|
C:LEU911
|
4.7
|
122.8
|
0.0
|
HB2
|
C:LEU911
|
4.7
|
123.5
|
0.0
|
HB
|
C:ILE816
|
4.7
|
89.1
|
0.0
|
HG21
|
C:ILE816
|
4.7
|
90.6
|
0.0
|
CE2
|
C:PHE1002
|
4.9
|
108.5
|
1.0
|
HD23
|
C:LEU911
|
4.9
|
124.2
|
0.0
|
N
|
C:THR813
|
4.9
|
87.8
|
1.0
|
HD11
|
C:LEU938
|
4.9
|
136.3
|
0.0
|
CG1
|
C:ILE816
|
4.9
|
91.9
|
1.0
|
|
Reference:
L.Buckbinder,
D.J.St Jean,
T.Tieu,
B.Ladd,
B.Hilbert,
W.Wang,
J.T.Alltucker,
S.Manimala,
G.V.Kryukov,
N.Brooijmans,
G.Dowdell,
P.Jonsson,
M.Huff,
A.Guzman-Perez,
E.L.Jackson,
M.D.Goncalves,
D.D.Stuart.
Stx-478, A Mutant-Selective, Allosteric PI3KA Inhibitor Spares Metabolic Dysfunction and Improves Therapeutic Response in PI3KA-Mutant Xenografts. Cancer Discov 2023.
ISSN: ESSN 2159-8290
PubMed: 37623743
DOI: 10.1158/2159-8290.CD-23-0396
Page generated: Sat Aug 3 00:29:24 2024
|