Fluorine in PDB 8twy: Structure of PIK3CA with Covalent Inhibitor ALO26
Protein crystallography data
The structure of Structure of PIK3CA with Covalent Inhibitor ALO26, PDB code: 8twy
was solved by
J.E.Burke,
I.Barlow-Busch,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.70 /
2.67
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.13,
135.41,
143.71,
90,
90,
90
|
R / Rfree (%)
|
22.5 /
26.1
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of PIK3CA with Covalent Inhibitor ALO26
(pdb code 8twy). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Structure of PIK3CA with Covalent Inhibitor ALO26, PDB code: 8twy:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 8twy
Go back to
Fluorine Binding Sites List in 8twy
Fluorine binding site 1 out
of 2 in the Structure of PIK3CA with Covalent Inhibitor ALO26
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of PIK3CA with Covalent Inhibitor ALO26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1101
b:102.3
occ:1.00
|
F06
|
A:RNX1101
|
0.0
|
102.3
|
1.0
|
C05
|
A:RNX1101
|
1.4
|
99.7
|
1.0
|
H051
|
A:RNX1101
|
1.9
|
119.6
|
1.0
|
F07
|
A:RNX1101
|
2.2
|
116.7
|
1.0
|
C04
|
A:RNX1101
|
2.5
|
92.4
|
1.0
|
NZ
|
A:LYS802
|
2.7
|
95.4
|
1.0
|
CE
|
A:LYS802
|
2.7
|
101.0
|
1.0
|
N03
|
A:RNX1101
|
3.0
|
93.9
|
1.0
|
CG
|
A:PRO778
|
3.5
|
99.3
|
1.0
|
C10
|
A:RNX1101
|
3.7
|
90.6
|
1.0
|
CB
|
A:PRO778
|
3.9
|
88.8
|
1.0
|
N12
|
A:RNX1101
|
4.0
|
88.2
|
1.0
|
CD
|
A:LYS802
|
4.2
|
104.4
|
1.0
|
C11
|
A:RNX1101
|
4.2
|
94.3
|
1.0
|
CE
|
A:MET772
|
4.2
|
67.5
|
1.0
|
C02
|
A:RNX1101
|
4.3
|
92.3
|
1.0
|
SD
|
A:MET772
|
4.4
|
98.8
|
1.0
|
CG2
|
A:ILE800
|
4.4
|
69.4
|
1.0
|
H152
|
A:RNX1101
|
4.8
|
122.5
|
1.0
|
CD
|
A:PRO778
|
4.8
|
98.6
|
1.0
|
C09
|
A:RNX1101
|
4.9
|
97.0
|
1.0
|
CB
|
A:LYS802
|
4.9
|
80.8
|
1.0
|
C13
|
A:RNX1101
|
4.9
|
95.6
|
1.0
|
CD1
|
A:ILE848
|
5.0
|
78.8
|
1.0
|
CB
|
A:ALA775
|
5.0
|
104.8
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 8twy
Go back to
Fluorine Binding Sites List in 8twy
Fluorine binding site 2 out
of 2 in the Structure of PIK3CA with Covalent Inhibitor ALO26
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of PIK3CA with Covalent Inhibitor ALO26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1101
b:116.7
occ:1.00
|
F07
|
A:RNX1101
|
0.0
|
116.7
|
1.0
|
C05
|
A:RNX1101
|
1.4
|
99.7
|
1.0
|
H051
|
A:RNX1101
|
2.0
|
119.6
|
1.0
|
F06
|
A:RNX1101
|
2.2
|
102.3
|
1.0
|
C04
|
A:RNX1101
|
2.4
|
92.4
|
1.0
|
N12
|
A:RNX1101
|
2.6
|
88.2
|
1.0
|
H152
|
A:RNX1101
|
2.7
|
122.5
|
1.0
|
C10
|
A:RNX1101
|
3.1
|
90.6
|
1.0
|
N03
|
A:RNX1101
|
3.2
|
93.9
|
1.0
|
C11
|
A:RNX1101
|
3.3
|
94.3
|
1.0
|
C15
|
A:RNX1101
|
3.6
|
102.1
|
1.0
|
C13
|
A:RNX1101
|
3.6
|
95.6
|
1.0
|
N14
|
A:RNX1101
|
3.8
|
106.8
|
1.0
|
NZ
|
A:LYS802
|
3.9
|
95.4
|
1.0
|
H162
|
A:RNX1101
|
4.2
|
139.7
|
1.0
|
H151
|
A:RNX1101
|
4.2
|
122.5
|
1.0
|
OD2
|
A:ASP933
|
4.4
|
109.6
|
1.0
|
CE
|
A:MET772
|
4.4
|
67.5
|
1.0
|
C02
|
A:RNX1101
|
4.4
|
92.3
|
1.0
|
C09
|
A:RNX1101
|
4.4
|
97.0
|
1.0
|
C16
|
A:RNX1101
|
4.4
|
116.3
|
1.0
|
N44
|
A:RNX1101
|
4.5
|
93.6
|
1.0
|
CE
|
A:LYS802
|
4.6
|
101.0
|
1.0
|
H161
|
A:RNX1101
|
4.7
|
139.7
|
1.0
|
N35
|
A:RNX1101
|
4.8
|
84.5
|
1.0
|
N08
|
A:RNX1101
|
4.8
|
94.0
|
1.0
|
|
Reference:
J.E.Burke,
I.Barlow-Busch.
Structure of PIK3CA with Covalent Inhibitor ALO26 To Be Published.
Page generated: Sat Sep 28 20:32:25 2024
|