Fluorine in PDB 8ub4: CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Enzymatic activity of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
All present enzymatic activity of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure:
3.6.4.6;
Other elements in 8ub4:
The structure of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Fluorine atom in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
(pdb code 8ub4). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the
CDC48-SHP1 Unfolding Native Substrate, Consensus Structure, PDB code: 8ub4:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 1 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:157.5
occ:1.00
|
F1
|
A:08T901
|
0.0
|
157.5
|
1.0
|
BE
|
A:08T901
|
1.5
|
156.3
|
1.0
|
MG
|
A:MG902
|
1.9
|
166.3
|
1.0
|
F3
|
A:08T901
|
2.5
|
155.5
|
1.0
|
O3B
|
A:08T901
|
2.5
|
154.7
|
1.0
|
F2
|
A:08T901
|
2.6
|
161.9
|
1.0
|
O2B
|
A:08T901
|
2.6
|
172.1
|
1.0
|
PB
|
A:08T901
|
3.1
|
158.1
|
1.0
|
HH12
|
B:ARG369
|
3.6
|
152.7
|
1.0
|
OG1
|
A:THR262
|
3.6
|
177.3
|
1.0
|
HH12
|
B:ARG372
|
3.7
|
142.0
|
1.0
|
HB2
|
A:LYS261
|
3.9
|
173.3
|
1.0
|
HH11
|
B:ARG369
|
3.9
|
150.9
|
1.0
|
H
|
A:THR262
|
4.0
|
175.8
|
1.0
|
O3A
|
A:08T901
|
4.0
|
157.7
|
1.0
|
NH1
|
B:ARG369
|
4.0
|
148.8
|
1.0
|
HH22
|
B:ARG372
|
4.1
|
144.3
|
1.0
|
HD2
|
A:LYS261
|
4.2
|
172.5
|
1.0
|
O1B
|
A:08T901
|
4.3
|
165.9
|
1.0
|
H
|
A:GLY258
|
4.4
|
156.8
|
1.0
|
NH1
|
B:ARG372
|
4.5
|
138.6
|
1.0
|
OD1
|
B:ASP343
|
4.5
|
152.1
|
1.0
|
HB
|
A:THR262
|
4.6
|
179.5
|
1.0
|
HZ2
|
A:LYS261
|
4.6
|
166.9
|
1.0
|
CB
|
A:THR262
|
4.7
|
177.5
|
1.0
|
NH2
|
B:ARG372
|
4.8
|
141.7
|
1.0
|
CB
|
A:LYS261
|
4.8
|
172.1
|
1.0
|
N
|
A:THR262
|
4.8
|
174.2
|
1.0
|
HA
|
A:PRO257
|
4.9
|
158.4
|
1.0
|
HB3
|
A:ASN358
|
5.0
|
174.5
|
1.0
|
|
Fluorine binding site 2 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 2 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:161.9
occ:1.00
|
F2
|
A:08T901
|
0.0
|
161.9
|
1.0
|
BE
|
A:08T901
|
1.6
|
156.3
|
1.0
|
HZ2
|
A:LYS261
|
2.2
|
166.9
|
1.0
|
F3
|
A:08T901
|
2.5
|
155.5
|
1.0
|
F1
|
A:08T901
|
2.6
|
157.5
|
1.0
|
O3B
|
A:08T901
|
2.6
|
154.7
|
1.0
|
HA
|
A:PRO257
|
2.7
|
158.4
|
1.0
|
HD2
|
A:LYS261
|
2.9
|
172.5
|
1.0
|
HB3
|
A:ASN358
|
3.0
|
174.5
|
1.0
|
NZ
|
A:LYS261
|
3.0
|
168.8
|
1.0
|
H
|
A:GLY258
|
3.2
|
156.8
|
1.0
|
HZ1
|
A:LYS261
|
3.3
|
168.3
|
1.0
|
PB
|
A:08T901
|
3.4
|
158.1
|
1.0
|
O2B
|
A:08T901
|
3.6
|
172.1
|
1.0
|
HZ3
|
A:LYS261
|
3.6
|
168.7
|
1.0
|
CD
|
A:LYS261
|
3.6
|
173.2
|
1.0
|
CA
|
A:PRO257
|
3.7
|
156.3
|
1.0
|
HB2
|
A:LYS261
|
3.7
|
173.3
|
1.0
|
CE
|
A:LYS261
|
3.8
|
174.0
|
1.0
|
O1B
|
A:08T901
|
3.8
|
165.9
|
1.0
|
HG3
|
A:LYS261
|
3.9
|
170.2
|
1.0
|
HD21
|
A:ASN358
|
3.9
|
169.0
|
1.0
|
HB3
|
A:PRO257
|
3.9
|
156.3
|
1.0
|
N
|
A:GLY258
|
3.9
|
156.0
|
1.0
|
HE2
|
A:LYS261
|
4.0
|
174.7
|
1.0
|
CB
|
A:ASN358
|
4.0
|
175.2
|
1.0
|
CG
|
A:LYS261
|
4.2
|
171.2
|
1.0
|
HB2
|
A:ASN358
|
4.3
|
173.8
|
1.0
|
MG
|
A:MG902
|
4.3
|
166.3
|
1.0
|
CB
|
A:PRO257
|
4.3
|
153.6
|
1.0
|
C
|
A:PRO257
|
4.4
|
153.5
|
1.0
|
ND2
|
A:ASN358
|
4.4
|
166.7
|
1.0
|
HD3
|
A:LYS261
|
4.4
|
175.2
|
1.0
|
CB
|
A:LYS261
|
4.4
|
172.1
|
1.0
|
HH22
|
B:ARG372
|
4.5
|
144.3
|
1.0
|
O
|
A:PRO256
|
4.6
|
166.2
|
1.0
|
HH11
|
B:ARG369
|
4.6
|
150.9
|
1.0
|
HB2
|
A:PRO257
|
4.6
|
154.3
|
1.0
|
H
|
A:THR259
|
4.6
|
160.9
|
1.0
|
CG
|
A:ASN358
|
4.6
|
174.9
|
1.0
|
N
|
A:PRO257
|
4.6
|
159.3
|
1.0
|
HE3
|
A:LYS261
|
4.7
|
175.0
|
1.0
|
H
|
A:LYS261
|
4.7
|
171.4
|
1.0
|
HA
|
A:ASN358
|
4.8
|
178.6
|
1.0
|
O3A
|
A:08T901
|
4.8
|
157.7
|
1.0
|
CA
|
A:ASN358
|
4.9
|
179.3
|
1.0
|
HB3
|
A:LYS261
|
4.9
|
173.9
|
1.0
|
H
|
A:ASN358
|
4.9
|
179.3
|
1.0
|
C
|
A:PRO256
|
4.9
|
164.1
|
1.0
|
|
Fluorine binding site 3 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 3 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:155.5
occ:1.00
|
F3
|
A:08T901
|
0.0
|
155.5
|
1.0
|
BE
|
A:08T901
|
1.5
|
156.3
|
1.0
|
HH22
|
B:ARG372
|
2.0
|
144.3
|
1.0
|
F2
|
A:08T901
|
2.5
|
161.9
|
1.0
|
F1
|
A:08T901
|
2.5
|
157.5
|
1.0
|
O3B
|
A:08T901
|
2.6
|
154.7
|
1.0
|
HH11
|
B:ARG369
|
2.6
|
150.9
|
1.0
|
NH2
|
B:ARG372
|
2.9
|
141.7
|
1.0
|
HH12
|
B:ARG372
|
3.1
|
142.0
|
1.0
|
HB3
|
A:PRO257
|
3.2
|
156.3
|
1.0
|
NH1
|
B:ARG369
|
3.2
|
148.8
|
1.0
|
HH12
|
B:ARG369
|
3.2
|
152.7
|
1.0
|
H
|
A:GLY258
|
3.3
|
156.8
|
1.0
|
HA
|
A:PRO257
|
3.4
|
158.4
|
1.0
|
HH21
|
B:ARG372
|
3.4
|
139.5
|
1.0
|
HD21
|
A:ASN358
|
3.5
|
169.0
|
1.0
|
HB2
|
A:PRO257
|
3.5
|
154.3
|
1.0
|
CB
|
A:PRO257
|
3.7
|
153.6
|
1.0
|
NH1
|
B:ARG372
|
3.7
|
138.6
|
1.0
|
CZ
|
B:ARG372
|
3.7
|
138.8
|
1.0
|
HD3
|
B:ARG369
|
3.8
|
146.1
|
1.0
|
CA
|
A:PRO257
|
3.9
|
156.3
|
1.0
|
N
|
A:GLY258
|
4.0
|
156.0
|
1.0
|
PB
|
A:08T901
|
4.0
|
158.1
|
1.0
|
ND2
|
A:ASN358
|
4.1
|
166.7
|
1.0
|
HB3
|
A:ASN358
|
4.3
|
174.5
|
1.0
|
MG
|
A:MG902
|
4.3
|
166.3
|
1.0
|
O2B
|
A:08T901
|
4.4
|
172.1
|
1.0
|
C
|
A:PRO257
|
4.4
|
153.5
|
1.0
|
HD22
|
A:ASN358
|
4.5
|
171.0
|
1.0
|
CZ
|
B:ARG369
|
4.5
|
147.0
|
1.0
|
HZ2
|
A:LYS261
|
4.5
|
166.9
|
1.0
|
HB1
|
B:ALA366
|
4.5
|
133.2
|
1.0
|
HH11
|
B:ARG372
|
4.5
|
139.7
|
1.0
|
HD2
|
B:ARG369
|
4.6
|
148.8
|
1.0
|
CD
|
B:ARG369
|
4.6
|
145.3
|
1.0
|
O3A
|
A:08T901
|
4.8
|
157.7
|
1.0
|
HA2
|
A:GLY258
|
4.9
|
156.4
|
1.0
|
HD22
|
B:LEU339
|
4.9
|
134.4
|
1.0
|
O1B
|
A:08T901
|
4.9
|
165.9
|
1.0
|
NE
|
B:ARG369
|
5.0
|
145.8
|
1.0
|
|
Fluorine binding site 4 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 4 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F903
b:122.8
occ:1.00
|
F1
|
A:08T903
|
0.0
|
122.8
|
1.0
|
BE
|
A:08T903
|
1.5
|
124.7
|
1.0
|
MG
|
A:MG904
|
1.9
|
112.5
|
1.0
|
O2B
|
A:08T903
|
2.5
|
125.4
|
1.0
|
F3
|
A:08T903
|
2.5
|
126.5
|
1.0
|
O3B
|
A:08T903
|
2.5
|
121.1
|
1.0
|
F2
|
A:08T903
|
2.6
|
132.5
|
1.0
|
PB
|
A:08T903
|
3.0
|
119.7
|
1.0
|
HH22
|
B:ARG648
|
3.4
|
117.3
|
1.0
|
HH12
|
B:ARG648
|
3.4
|
116.8
|
1.0
|
OG1
|
A:THR535
|
3.4
|
123.9
|
1.0
|
HH12
|
B:ARG645
|
3.5
|
122.0
|
1.0
|
HE2
|
A:LYS534
|
3.7
|
119.3
|
1.0
|
O3A
|
A:08T903
|
3.8
|
117.0
|
1.0
|
O1A
|
A:08T903
|
3.9
|
125.0
|
1.0
|
H
|
A:THR535
|
3.9
|
119.5
|
1.0
|
HH11
|
B:ARG645
|
4.0
|
120.8
|
1.0
|
NH1
|
B:ARG645
|
4.0
|
120.9
|
1.0
|
HB2
|
A:LYS534
|
4.1
|
116.7
|
1.0
|
NH2
|
B:ARG648
|
4.2
|
116.9
|
1.0
|
NH1
|
B:ARG648
|
4.2
|
113.0
|
1.0
|
HB
|
A:THR535
|
4.3
|
122.7
|
1.0
|
O1B
|
A:08T903
|
4.3
|
133.2
|
1.0
|
H
|
A:GLY531
|
4.4
|
121.8
|
1.0
|
HZ1
|
A:LYS534
|
4.4
|
120.5
|
1.0
|
CB
|
A:THR535
|
4.5
|
122.0
|
1.0
|
OE2
|
A:GLU588
|
4.5
|
140.8
|
1.0
|
PA
|
A:08T903
|
4.5
|
124.5
|
1.0
|
CE
|
A:LYS534
|
4.5
|
118.6
|
1.0
|
HA
|
A:PRO530
|
4.7
|
120.2
|
1.0
|
CZ
|
B:ARG648
|
4.7
|
111.0
|
1.0
|
N
|
A:THR535
|
4.7
|
117.3
|
1.0
|
HZ3
|
A:LYS534
|
4.8
|
120.3
|
1.0
|
NZ
|
A:LYS534
|
4.8
|
119.4
|
1.0
|
HE3
|
A:LYS534
|
4.8
|
119.8
|
1.0
|
HD22
|
A:ASN634
|
4.8
|
132.2
|
1.0
|
HH21
|
B:ARG648
|
4.9
|
114.5
|
1.0
|
HH11
|
B:ARG648
|
4.9
|
112.2
|
1.0
|
|
Fluorine binding site 5 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 5 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F903
b:132.5
occ:1.00
|
F2
|
A:08T903
|
0.0
|
132.5
|
1.0
|
BE
|
A:08T903
|
1.6
|
124.7
|
1.0
|
HZ1
|
A:LYS534
|
2.4
|
120.5
|
1.0
|
F3
|
A:08T903
|
2.5
|
126.5
|
1.0
|
F1
|
A:08T903
|
2.6
|
122.8
|
1.0
|
O3B
|
A:08T903
|
2.6
|
121.1
|
1.0
|
HA
|
A:PRO530
|
2.7
|
120.2
|
1.0
|
HE2
|
A:LYS534
|
2.7
|
119.3
|
1.0
|
NZ
|
A:LYS534
|
3.1
|
119.4
|
1.0
|
HD22
|
A:ASN634
|
3.1
|
132.2
|
1.0
|
HE3
|
A:LYS534
|
3.1
|
119.8
|
1.0
|
CE
|
A:LYS534
|
3.1
|
118.6
|
1.0
|
ND2
|
A:ASN634
|
3.2
|
132.3
|
1.0
|
HD21
|
A:ASN634
|
3.3
|
129.4
|
1.0
|
HB3
|
A:PRO530
|
3.4
|
118.3
|
1.0
|
HZ3
|
A:LYS534
|
3.5
|
120.3
|
1.0
|
PB
|
A:08T903
|
3.5
|
119.7
|
1.0
|
O2B
|
A:08T903
|
3.6
|
125.4
|
1.0
|
CA
|
A:PRO530
|
3.6
|
120.0
|
1.0
|
H
|
A:GLY531
|
3.7
|
121.8
|
1.0
|
HZ2
|
A:LYS534
|
3.8
|
121.0
|
1.0
|
CG
|
A:ASN634
|
3.8
|
131.7
|
1.0
|
HB2
|
A:ASN634
|
4.0
|
130.7
|
1.0
|
CB
|
A:PRO530
|
4.0
|
117.6
|
1.0
|
O1B
|
A:08T903
|
4.2
|
133.2
|
1.0
|
HH12
|
B:ARG648
|
4.2
|
116.8
|
1.0
|
MG
|
A:MG904
|
4.2
|
112.5
|
1.0
|
HA
|
A:ASN634
|
4.3
|
126.7
|
1.0
|
CB
|
A:ASN634
|
4.4
|
130.4
|
1.0
|
HH11
|
B:ARG645
|
4.4
|
120.8
|
1.0
|
N
|
A:GLY531
|
4.4
|
120.9
|
1.0
|
N
|
A:PRO530
|
4.4
|
116.4
|
1.0
|
HB2
|
A:LYS534
|
4.4
|
116.7
|
1.0
|
OD1
|
A:ASN634
|
4.5
|
136.1
|
1.0
|
O
|
A:PRO529
|
4.5
|
127.8
|
1.0
|
OE2
|
A:GLU588
|
4.6
|
140.8
|
1.0
|
C
|
A:PRO530
|
4.6
|
121.8
|
1.0
|
HB2
|
A:PRO530
|
4.6
|
119.2
|
1.0
|
CD
|
A:LYS534
|
4.6
|
121.8
|
1.0
|
HH22
|
B:ARG648
|
4.7
|
117.3
|
1.0
|
HH12
|
B:ARG645
|
4.7
|
122.0
|
1.0
|
C
|
A:PRO529
|
4.8
|
121.2
|
1.0
|
CA
|
A:ASN634
|
4.8
|
128.1
|
1.0
|
NH1
|
B:ARG645
|
4.9
|
120.9
|
1.0
|
O3A
|
A:08T903
|
4.9
|
117.0
|
1.0
|
NH1
|
B:ARG648
|
4.9
|
113.0
|
1.0
|
HG1
|
A:THR532
|
5.0
|
123.2
|
1.0
|
HD2
|
A:LYS534
|
5.0
|
121.8
|
1.0
|
HG3
|
A:PRO530
|
5.0
|
114.9
|
1.0
|
HG3
|
A:LYS534
|
5.0
|
118.3
|
1.0
|
|
Fluorine binding site 6 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 6 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F903
b:126.5
occ:1.00
|
F3
|
A:08T903
|
0.0
|
126.5
|
1.0
|
BE
|
A:08T903
|
1.5
|
124.7
|
1.0
|
HH12
|
B:ARG648
|
1.7
|
116.8
|
1.0
|
F2
|
A:08T903
|
2.5
|
132.5
|
1.0
|
NH1
|
B:ARG648
|
2.5
|
113.0
|
1.0
|
F1
|
A:08T903
|
2.5
|
122.8
|
1.0
|
O3B
|
A:08T903
|
2.6
|
121.1
|
1.0
|
HH11
|
B:ARG645
|
2.6
|
120.8
|
1.0
|
HH12
|
B:ARG645
|
2.8
|
122.0
|
1.0
|
NH1
|
B:ARG645
|
2.9
|
120.9
|
1.0
|
HH11
|
B:ARG648
|
2.9
|
112.2
|
1.0
|
HB3
|
A:PRO530
|
3.0
|
118.3
|
1.0
|
HH22
|
B:ARG648
|
3.1
|
117.3
|
1.0
|
HA
|
A:PRO530
|
3.4
|
120.2
|
1.0
|
CZ
|
B:ARG648
|
3.5
|
111.0
|
1.0
|
H
|
A:GLY531
|
3.5
|
121.8
|
1.0
|
HD22
|
A:ASN634
|
3.6
|
132.2
|
1.0
|
NH2
|
B:ARG648
|
3.6
|
116.9
|
1.0
|
HD21
|
A:ASN634
|
3.7
|
129.4
|
1.0
|
HD3
|
B:ARG645
|
3.7
|
114.7
|
1.0
|
CB
|
A:PRO530
|
3.7
|
117.6
|
1.0
|
HB2
|
A:PRO530
|
3.8
|
119.2
|
1.0
|
CZ
|
B:ARG645
|
3.9
|
111.8
|
1.0
|
ND2
|
A:ASN634
|
3.9
|
132.3
|
1.0
|
PB
|
A:08T903
|
3.9
|
119.7
|
1.0
|
CA
|
A:PRO530
|
4.0
|
120.0
|
1.0
|
N
|
A:GLY531
|
4.2
|
120.9
|
1.0
|
MG
|
A:MG904
|
4.2
|
112.5
|
1.0
|
O2B
|
A:08T903
|
4.3
|
125.4
|
1.0
|
HB1
|
B:ALA642
|
4.4
|
109.4
|
1.0
|
HH21
|
B:ARG648
|
4.4
|
114.5
|
1.0
|
CD
|
B:ARG645
|
4.5
|
114.0
|
1.0
|
HZ1
|
A:LYS534
|
4.5
|
120.5
|
1.0
|
NE
|
B:ARG645
|
4.6
|
109.2
|
1.0
|
O3A
|
A:08T903
|
4.6
|
117.0
|
1.0
|
HH22
|
B:ARG645
|
4.6
|
120.4
|
1.0
|
C
|
A:PRO530
|
4.6
|
121.8
|
1.0
|
NE
|
B:ARG648
|
4.7
|
106.9
|
1.0
|
NH2
|
B:ARG645
|
4.7
|
114.2
|
1.0
|
HD2
|
B:ARG648
|
4.8
|
107.2
|
1.0
|
HD2
|
B:ARG645
|
4.9
|
116.8
|
1.0
|
HE2
|
A:LYS534
|
5.0
|
119.3
|
1.0
|
HG3
|
A:PRO530
|
5.0
|
114.9
|
1.0
|
CG
|
A:PRO530
|
5.0
|
113.7
|
1.0
|
|
Fluorine binding site 7 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 7 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F901
b:98.8
occ:1.00
|
F1
|
B:08T901
|
0.0
|
98.8
|
1.0
|
BE
|
B:08T901
|
1.5
|
94.4
|
1.0
|
MG
|
B:MG902
|
1.9
|
95.7
|
1.0
|
O2B
|
B:08T901
|
2.4
|
92.2
|
1.0
|
F3
|
B:08T901
|
2.5
|
103.0
|
1.0
|
O3B
|
B:08T901
|
2.5
|
85.2
|
1.0
|
F2
|
B:08T901
|
2.6
|
100.0
|
1.0
|
PB
|
B:08T901
|
2.9
|
87.0
|
1.0
|
HH22
|
C:ARG372
|
3.0
|
99.5
|
1.0
|
OG1
|
B:THR262
|
3.4
|
95.0
|
1.0
|
NH2
|
C:ARG372
|
3.7
|
100.7
|
1.0
|
HH21
|
C:ARG372
|
3.7
|
98.7
|
1.0
|
HH21
|
C:ARG369
|
3.8
|
94.9
|
1.0
|
HE2
|
B:LYS261
|
3.9
|
85.0
|
1.0
|
O3A
|
B:08T901
|
3.9
|
89.0
|
1.0
|
H
|
B:THR262
|
4.1
|
88.8
|
1.0
|
HH22
|
C:ARG369
|
4.2
|
97.2
|
1.0
|
O1B
|
B:08T901
|
4.2
|
96.9
|
1.0
|
NH2
|
C:ARG369
|
4.2
|
94.8
|
1.0
|
HB
|
B:THR262
|
4.3
|
91.7
|
1.0
|
HB2
|
B:LYS261
|
4.3
|
85.2
|
1.0
|
H
|
B:GLY258
|
4.4
|
82.7
|
1.0
|
O1A
|
B:08T901
|
4.4
|
93.3
|
1.0
|
CB
|
B:THR262
|
4.4
|
91.9
|
1.0
|
HD22
|
B:ASN358
|
4.5
|
102.5
|
1.0
|
OE2
|
B:GLU315
|
4.5
|
115.0
|
1.0
|
HZ1
|
B:LYS261
|
4.7
|
85.9
|
1.0
|
HH12
|
C:ARG372
|
4.7
|
94.8
|
1.0
|
CE
|
B:LYS261
|
4.7
|
85.1
|
1.0
|
OD1
|
B:ASN358
|
4.8
|
111.5
|
1.0
|
CZ
|
C:ARG372
|
4.8
|
95.2
|
1.0
|
O
|
C:ASP343
|
4.8
|
101.2
|
1.0
|
PA
|
B:08T901
|
4.8
|
91.5
|
1.0
|
N
|
B:THR262
|
4.9
|
87.6
|
1.0
|
HA
|
B:PRO257
|
4.9
|
81.9
|
1.0
|
HE3
|
B:LYS261
|
5.0
|
86.5
|
1.0
|
|
Fluorine binding site 8 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 8 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F901
b:100.0
occ:1.00
|
F2
|
B:08T901
|
0.0
|
100.0
|
1.0
|
BE
|
B:08T901
|
1.6
|
94.4
|
1.0
|
F3
|
B:08T901
|
2.5
|
103.0
|
1.0
|
F1
|
B:08T901
|
2.6
|
98.8
|
1.0
|
O3B
|
B:08T901
|
2.6
|
85.2
|
1.0
|
HD22
|
B:ASN358
|
2.6
|
102.5
|
1.0
|
HA
|
B:PRO257
|
2.8
|
81.9
|
1.0
|
OD1
|
B:ASN358
|
2.9
|
111.5
|
1.0
|
HZ1
|
B:LYS261
|
3.0
|
85.9
|
1.0
|
ND2
|
B:ASN358
|
3.2
|
101.0
|
1.0
|
HE2
|
B:LYS261
|
3.2
|
85.0
|
1.0
|
HB3
|
B:PRO257
|
3.2
|
83.6
|
1.0
|
CG
|
B:ASN358
|
3.3
|
103.4
|
1.0
|
H
|
B:GLY258
|
3.4
|
82.7
|
1.0
|
CA
|
B:PRO257
|
3.6
|
81.0
|
1.0
|
PB
|
B:08T901
|
3.6
|
87.0
|
1.0
|
HE3
|
B:LYS261
|
3.7
|
86.5
|
1.0
|
NZ
|
B:LYS261
|
3.7
|
86.5
|
1.0
|
CE
|
B:LYS261
|
3.7
|
85.1
|
1.0
|
HH22
|
C:ARG372
|
3.7
|
99.5
|
1.0
|
CB
|
B:PRO257
|
3.8
|
83.7
|
1.0
|
O2B
|
B:08T901
|
3.8
|
92.2
|
1.0
|
HD21
|
B:ASN358
|
3.9
|
101.4
|
1.0
|
HZ3
|
B:LYS261
|
4.0
|
86.5
|
1.0
|
HB2
|
B:PRO257
|
4.0
|
82.1
|
1.0
|
N
|
B:GLY258
|
4.1
|
81.6
|
1.0
|
OE2
|
B:GLU315
|
4.2
|
115.0
|
1.0
|
O1B
|
B:08T901
|
4.2
|
96.9
|
1.0
|
HH21
|
C:ARG369
|
4.3
|
94.9
|
1.0
|
HH12
|
C:ARG372
|
4.3
|
94.8
|
1.0
|
MG
|
B:MG902
|
4.3
|
95.7
|
1.0
|
HZ2
|
B:LYS261
|
4.4
|
87.2
|
1.0
|
C
|
B:PRO257
|
4.5
|
78.1
|
1.0
|
NH2
|
C:ARG372
|
4.6
|
100.7
|
1.0
|
N
|
B:PRO257
|
4.6
|
80.1
|
1.0
|
CB
|
B:ASN358
|
4.7
|
97.6
|
1.0
|
HE
|
C:ARG369
|
4.7
|
88.6
|
1.0
|
HB3
|
B:ASN358
|
4.8
|
94.8
|
1.0
|
HB2
|
B:LYS261
|
4.9
|
85.2
|
1.0
|
O
|
B:PRO256
|
4.9
|
87.8
|
1.0
|
NH2
|
C:ARG369
|
4.9
|
94.8
|
1.0
|
HB1
|
C:ALA366
|
4.9
|
96.3
|
1.0
|
O3A
|
B:08T901
|
4.9
|
89.0
|
1.0
|
|
Fluorine binding site 9 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 9 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F901
b:103.0
occ:1.00
|
F3
|
B:08T901
|
0.0
|
103.0
|
1.0
|
BE
|
B:08T901
|
1.5
|
94.4
|
1.0
|
HH21
|
C:ARG369
|
1.9
|
94.9
|
1.0
|
HH22
|
C:ARG372
|
1.9
|
99.5
|
1.0
|
HH12
|
C:ARG372
|
2.4
|
94.8
|
1.0
|
F2
|
B:08T901
|
2.5
|
100.0
|
1.0
|
F1
|
B:08T901
|
2.5
|
98.8
|
1.0
|
NH2
|
C:ARG369
|
2.5
|
94.8
|
1.0
|
O3B
|
B:08T901
|
2.6
|
85.2
|
1.0
|
NH2
|
C:ARG372
|
2.6
|
100.7
|
1.0
|
NH1
|
C:ARG372
|
3.0
|
93.4
|
1.0
|
HH22
|
C:ARG369
|
3.0
|
97.2
|
1.0
|
HE
|
C:ARG369
|
3.0
|
88.6
|
1.0
|
CZ
|
C:ARG372
|
3.1
|
95.2
|
1.0
|
HH21
|
C:ARG372
|
3.2
|
98.7
|
1.0
|
CZ
|
C:ARG369
|
3.4
|
87.6
|
1.0
|
H
|
B:GLY258
|
3.5
|
82.7
|
1.0
|
NE
|
C:ARG369
|
3.5
|
87.9
|
1.0
|
HH11
|
C:ARG372
|
3.7
|
93.6
|
1.0
|
HB3
|
B:PRO257
|
3.8
|
83.6
|
1.0
|
HD22
|
B:ASN358
|
3.9
|
102.5
|
1.0
|
HB2
|
B:PRO257
|
3.9
|
82.1
|
1.0
|
PB
|
B:08T901
|
3.9
|
87.0
|
1.0
|
HA
|
B:PRO257
|
4.0
|
81.9
|
1.0
|
MG
|
B:MG902
|
4.1
|
95.7
|
1.0
|
HB1
|
C:ALA366
|
4.2
|
96.3
|
1.0
|
N
|
B:GLY258
|
4.2
|
81.6
|
1.0
|
CB
|
B:PRO257
|
4.2
|
83.7
|
1.0
|
O2B
|
B:08T901
|
4.2
|
92.2
|
1.0
|
NE
|
C:ARG372
|
4.3
|
94.0
|
1.0
|
O3A
|
B:08T901
|
4.5
|
89.0
|
1.0
|
CA
|
B:PRO257
|
4.5
|
81.0
|
1.0
|
NH1
|
C:ARG369
|
4.6
|
86.7
|
1.0
|
HD22
|
C:LEU339
|
4.6
|
102.9
|
1.0
|
ND2
|
B:ASN358
|
4.6
|
101.0
|
1.0
|
HE
|
C:ARG372
|
4.7
|
97.4
|
1.0
|
HA2
|
B:GLY258
|
4.8
|
87.6
|
1.0
|
HH12
|
C:ARG369
|
4.8
|
92.2
|
1.0
|
CD
|
C:ARG369
|
4.9
|
94.3
|
1.0
|
O
|
C:ALA366
|
4.9
|
94.7
|
1.0
|
C
|
B:PRO257
|
4.9
|
78.1
|
1.0
|
OE2
|
B:GLU315
|
5.0
|
115.0
|
1.0
|
HG3
|
C:ARG372
|
5.0
|
94.3
|
1.0
|
|
Fluorine binding site 10 out
of 24 in 8ub4
Go back to
Fluorine Binding Sites List in 8ub4
Fluorine binding site 10 out
of 24 in the CDC48-SHP1 Unfolding Native Substrate, Consensus Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of CDC48-SHP1 Unfolding Native Substrate, Consensus Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F903
b:102.8
occ:1.00
|
F1
|
B:08T903
|
0.0
|
102.8
|
1.0
|
BE
|
B:08T903
|
1.5
|
99.1
|
1.0
|
MG
|
B:MG904
|
1.8
|
97.1
|
1.0
|
O2B
|
B:08T903
|
2.4
|
99.7
|
1.0
|
F3
|
B:08T903
|
2.5
|
102.9
|
1.0
|
O3B
|
B:08T903
|
2.6
|
96.0
|
1.0
|
F2
|
B:08T903
|
2.6
|
99.7
|
1.0
|
PB
|
B:08T903
|
2.9
|
90.4
|
1.0
|
OG1
|
B:THR535
|
3.5
|
96.9
|
1.0
|
HH22
|
C:ARG648
|
3.5
|
100.2
|
1.0
|
HH12
|
C:ARG648
|
3.7
|
97.2
|
1.0
|
HH21
|
C:ARG645
|
3.9
|
98.2
|
1.0
|
O3A
|
B:08T903
|
4.0
|
83.8
|
1.0
|
O1B
|
B:08T903
|
4.1
|
94.3
|
1.0
|
HD2
|
B:LYS534
|
4.1
|
80.0
|
1.0
|
OE2
|
B:GLU588
|
4.2
|
116.0
|
1.0
|
HZ3
|
B:LYS534
|
4.2
|
84.6
|
1.0
|
NH2
|
C:ARG648
|
4.2
|
100.6
|
1.0
|
HB2
|
B:LYS534
|
4.3
|
83.6
|
1.0
|
H
|
B:THR535
|
4.3
|
84.3
|
1.0
|
NH1
|
C:ARG648
|
4.4
|
95.3
|
1.0
|
NH2
|
C:ARG645
|
4.5
|
99.2
|
1.0
|
H
|
B:GLY531
|
4.6
|
88.5
|
1.0
|
CZ
|
C:ARG648
|
4.7
|
93.3
|
1.0
|
HH22
|
C:ARG645
|
4.7
|
99.6
|
1.0
|
HZ2
|
B:LYS534
|
4.8
|
84.8
|
1.0
|
HH21
|
C:ARG648
|
4.8
|
99.7
|
1.0
|
CB
|
B:THR535
|
4.8
|
90.9
|
1.0
|
HA
|
B:PRO530
|
4.8
|
87.4
|
1.0
|
HE
|
C:ARG645
|
4.8
|
92.2
|
1.0
|
HB
|
B:THR535
|
4.8
|
89.8
|
1.0
|
NZ
|
B:LYS534
|
4.9
|
84.2
|
1.0
|
HH11
|
C:ARG648
|
5.0
|
93.1
|
1.0
|
|
Reference:
I.Cooney,
H.L.Schubert,
K.Cedeno,
O.N.Fisher,
R.Carson,
J.C.Price,
C.P.Hill,
P.S.Shen.
Visualization of the CDC48 Aaa+ Atpase Protein Unfolding Pathway. Nat Commun V. 15 7505 2024.
ISSN: ESSN 2041-1723
PubMed: 39209885
DOI: 10.1038/S41467-024-51835-3
Page generated: Wed Nov 13 08:17:28 2024
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