Fluorine in PDB 8uv0: Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2

Enzymatic activity of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2

All present enzymatic activity of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2:
2.7.11.22;

Protein crystallography data

The structure of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2, PDB code: 8uv0 was solved by M.C.Deller, L.B.Epling, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.663, 72.009, 71.913, 90, 90, 90
R / Rfree (%) 15.5 / 20.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 (pdb code 8uv0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2, PDB code: 8uv0:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8uv0

Go back to Fluorine Binding Sites List in 8uv0
Fluorine binding site 1 out of 3 in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:27.1
occ:1.00
F26 A:XKU301 0.0 27.1 1.0
C25 A:XKU301 1.3 24.2 1.0
F28 A:XKU301 2.1 25.8 1.0
F27 A:XKU301 2.2 26.5 1.0
C12 A:XKU301 2.3 22.3 1.0
H44 A:XKU301 2.3 23.2 1.0
HB3 A:PHE80 2.6 25.8 1.0
HG13 A:VAL64 2.6 28.4 1.0
C13 A:XKU301 2.6 23.1 1.0
HB2 A:PHE80 2.7 26.1 1.0
CB A:PHE80 3.0 26.9 1.0
HB3 A:ALA31 3.2 25.4 1.0
HG12 A:VAL64 3.2 30.7 1.0
CG1 A:VAL64 3.3 30.0 1.0
O A:GLU81 3.3 25.6 1.0
CG A:PHE80 3.4 25.2 1.0
C11 A:XKU301 3.7 24.6 1.0
HG11 A:VAL64 3.8 29.3 1.0
HB1 A:ALA31 3.8 25.3 1.0
CB A:ALA31 3.8 25.5 1.0
CD2 A:PHE80 3.8 26.9 1.0
HD2 A:PHE80 3.8 26.1 1.0
N14 A:XKU301 3.9 23.0 1.0
HD11 A:LEU134 4.0 25.6 1.0
HB2 A:ALA31 4.0 25.2 1.0
CD1 A:PHE80 4.1 27.1 1.0
H45 A:XKU301 4.1 25.8 1.0
HG21 A:VAL64 4.2 26.2 1.0
HD1 A:PHE80 4.2 25.8 1.0
HD13 A:LEU134 4.3 26.0 1.0
O A:HOH454 4.3 48.5 1.0
HB1 A:ALA144 4.4 28.2 1.0
HB2 A:ALA144 4.4 27.8 1.0
CA A:PHE80 4.4 25.7 1.0
C15 A:XKU301 4.5 26.6 1.0
CD1 A:LEU134 4.5 26.4 1.0
CB A:VAL64 4.5 24.4 1.0
C A:GLU81 4.5 24.6 1.0
HD12 A:LEU134 4.6 26.4 1.0
HB A:VAL64 4.6 24.7 1.0
C16 A:XKU301 4.6 25.4 1.0
C A:PHE80 4.6 25.4 1.0
O A:HOH407 4.7 46.8 1.0
N10 A:XKU301 4.7 25.3 1.0
HA A:PHE82 4.7 24.6 1.0
CE2 A:PHE80 4.7 29.9 1.0
C9 A:XKU301 4.8 23.4 1.0
CG2 A:VAL64 4.8 26.7 1.0
HG13 A:VAL18 4.8 27.4 1.0
N A:GLU81 4.8 23.8 1.0
CB A:ALA144 4.8 28.4 1.0
CE1 A:PHE80 4.9 29.6 1.0
HA A:PHE80 4.9 26.4 1.0

Fluorine binding site 2 out of 3 in 8uv0

Go back to Fluorine Binding Sites List in 8uv0
Fluorine binding site 2 out of 3 in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:26.5
occ:1.00
F27 A:XKU301 0.0 26.5 1.0
C25 A:XKU301 1.4 24.2 1.0
F26 A:XKU301 2.2 27.1 1.0
F28 A:XKU301 2.2 25.8 1.0
C12 A:XKU301 2.4 22.3 1.0
H45 A:XKU301 2.6 25.8 1.0
HG13 A:VAL18 2.9 27.4 1.0
HB1 A:ALA31 3.0 25.3 1.0
C16 A:XKU301 3.1 25.4 1.0
C11 A:XKU301 3.1 24.6 1.0
HD2 A:PHE80 3.2 26.1 1.0
C15 A:XKU301 3.3 26.6 1.0
O A:HOH407 3.3 46.8 1.0
HB3 A:ALA31 3.3 25.4 1.0
HB2 A:PHE80 3.4 26.1 1.0
C13 A:XKU301 3.4 23.1 1.0
CD2 A:PHE80 3.5 26.9 1.0
CB A:ALA31 3.6 25.5 1.0
HG11 A:VAL18 3.6 28.7 1.0
CG1 A:VAL18 3.7 28.1 1.0
H44 A:XKU301 3.7 23.2 1.0
HG21 A:VAL18 3.8 28.1 1.0
CG A:PHE80 3.9 25.2 1.0
HB2 A:ALA31 4.0 25.2 1.0
CB A:PHE80 4.0 26.9 1.0
HB3 A:PHE80 4.1 25.8 1.0
CE2 A:PHE80 4.1 29.9 1.0
HG12 A:VAL18 4.2 28.0 1.0
N17 A:XKU301 4.3 28.2 1.0
HE2 A:PHE80 4.3 29.6 1.0
N10 A:XKU301 4.3 25.3 1.0
HB2 A:LYS33 4.4 27.8 1.0
CG2 A:VAL18 4.5 29.5 1.0
C19 A:XKU301 4.6 34.5 1.0
N14 A:XKU301 4.6 23.0 1.0
HB1 A:ALA144 4.6 28.2 1.0
HG23 A:VAL18 4.6 29.9 1.0
HG13 A:VAL64 4.6 28.4 1.0
H49 A:XKU301 4.7 34.4 1.0
HD2 A:LYS33 4.7 39.5 1.0
HD11 A:LEU134 4.7 25.6 1.0
CB A:VAL18 4.8 28.0 1.0
CD1 A:PHE80 4.8 27.1 1.0
HD13 A:ILE10 4.8 30.6 1.0
C9 A:XKU301 4.9 23.4 1.0
O A:ALA31 4.9 29.6 1.0
CA A:ALA31 4.9 26.4 1.0
CZ A:PHE80 5.0 30.8 1.0

Fluorine binding site 3 out of 3 in 8uv0

Go back to Fluorine Binding Sites List in 8uv0
Fluorine binding site 3 out of 3 in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:25.8
occ:1.00
F28 A:XKU301 0.0 25.8 1.0
C25 A:XKU301 1.3 24.2 1.0
F26 A:XKU301 2.1 27.1 1.0
F27 A:XKU301 2.2 26.5 1.0
C12 A:XKU301 2.3 22.3 1.0
H45 A:XKU301 2.4 25.8 1.0
HB1 A:ALA144 2.6 28.2 1.0
HD11 A:LEU134 3.0 25.6 1.0
C16 A:XKU301 3.0 25.4 1.0
C11 A:XKU301 3.0 24.6 1.0
HB2 A:ALA144 3.1 27.8 1.0
C15 A:XKU301 3.2 26.6 1.0
CB A:ALA144 3.3 28.4 1.0
C13 A:XKU301 3.4 23.1 1.0
HG13 A:VAL64 3.6 28.4 1.0
O A:HOH407 3.6 46.8 1.0
H44 A:XKU301 3.7 23.2 1.0
HB3 A:ALA144 3.8 27.3 1.0
CD1 A:LEU134 3.8 26.4 1.0
O A:HOH454 3.9 48.5 1.0
HD13 A:LEU134 4.0 26.0 1.0
HG21 A:VAL64 4.0 26.2 1.0
HD12 A:LEU134 4.1 26.4 1.0
N17 A:XKU301 4.2 28.2 1.0
OD2 A:ASP145 4.2 49.4 1.0
N10 A:XKU301 4.3 25.3 1.0
HG12 A:VAL64 4.3 30.7 1.0
CG1 A:VAL64 4.3 30.0 1.0
HA A:ALA144 4.4 25.0 1.0
CA A:ALA144 4.4 24.0 1.0
O29 A:XKU301 4.5 50.3 1.0
N14 A:XKU301 4.5 23.0 1.0
HB3 A:PHE80 4.5 25.8 1.0
C19 A:XKU301 4.6 34.5 1.0
HG13 A:VAL18 4.6 27.4 1.0
H A:ASP145 4.6 33.7 1.0
HB2 A:PHE80 4.6 26.1 1.0
HB A:VAL64 4.7 24.7 1.0
CG A:PHE80 4.7 25.2 1.0
H49 A:XKU301 4.8 34.4 1.0
CD2 A:PHE80 4.8 26.9 1.0
C9 A:XKU301 4.8 23.4 1.0
HB3 A:ALA31 4.8 25.4 1.0
HD2 A:PHE80 4.9 26.1 1.0
CB A:PHE80 4.9 26.9 1.0
CG2 A:VAL64 4.9 26.7 1.0
HB1 A:ALA31 4.9 25.3 1.0
HD23 A:LEU134 4.9 24.5 1.0
CB A:VAL64 4.9 24.4 1.0
HG A:LEU134 4.9 23.0 1.0

Reference:

J.R.Hummel, K.J.Xiao, J.C.Yang, L.B.Epling, K.Mukai, Q.Ye, M.Xu, D.Qian, L.Huo, M.Weber, V.Roman, Y.Lo, K.Drake, K.Stump, M.Covington, K.Kapilashrami, G.Zhang, M.Ye, S.Diamond, S.Yeleswaram, R.Macarron, M.C.Deller, S.Wee, S.Kim, X.Wang, L.Wu, W.Yao. Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2. J.Med.Chem. 2024.
ISSN: ISSN 0022-2623
PubMed: 38325398
DOI: 10.1021/ACS.JMEDCHEM.3C02287
Page generated: Sat Aug 3 01:12:24 2024

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