Fluorine in PDB 8uv0: Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2

Enzymatic activity of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2

All present enzymatic activity of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2:
2.7.11.22;

Protein crystallography data

The structure of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2, PDB code: 8uv0 was solved by M.C.Deller, L.B.Epling, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.663, 72.009, 71.913, 90, 90, 90
R / Rfree (%) 15.5 / 20.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 (pdb code 8uv0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2, PDB code: 8uv0:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8uv0

Go back to Fluorine Binding Sites List in 8uv0
Fluorine binding site 1 out of 3 in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:27.1
occ:1.00
F26 A:XKU301 0.0 27.1 1.0
C25 A:XKU301 1.3 24.2 1.0
F28 A:XKU301 2.1 25.8 1.0
F27 A:XKU301 2.2 26.5 1.0
C12 A:XKU301 2.3 22.3 1.0
H44 A:XKU301 2.3 23.2 1.0
HB3 A:PHE80 2.6 25.8 1.0
HG13 A:VAL64 2.6 28.4 1.0
C13 A:XKU301 2.6 23.1 1.0
HB2 A:PHE80 2.7 26.1 1.0
CB A:PHE80 3.0 26.9 1.0
HB3 A:ALA31 3.2 25.4 1.0
HG12 A:VAL64 3.2 30.7 1.0
CG1 A:VAL64 3.3 30.0 1.0
O A:GLU81 3.3 25.6 1.0
CG A:PHE80 3.4 25.2 1.0
C11 A:XKU301 3.7 24.6 1.0
HG11 A:VAL64 3.8 29.3 1.0
HB1 A:ALA31 3.8 25.3 1.0
CB A:ALA31 3.8 25.5 1.0
CD2 A:PHE80 3.8 26.9 1.0
HD2 A:PHE80 3.8 26.1 1.0
N14 A:XKU301 3.9 23.0 1.0
HD11 A:LEU134 4.0 25.6 1.0
HB2 A:ALA31 4.0 25.2 1.0
CD1 A:PHE80 4.1 27.1 1.0
H45 A:XKU301 4.1 25.8 1.0
HG21 A:VAL64 4.2 26.2 1.0
HD1 A:PHE80 4.2 25.8 1.0
HD13 A:LEU134 4.3 26.0 1.0
O A:HOH454 4.3 48.5 1.0
HB1 A:ALA144 4.4 28.2 1.0
HB2 A:ALA144 4.4 27.8 1.0
CA A:PHE80 4.4 25.7 1.0
C15 A:XKU301 4.5 26.6 1.0
CD1 A:LEU134 4.5 26.4 1.0
CB A:VAL64 4.5 24.4 1.0
C A:GLU81 4.5 24.6 1.0
HD12 A:LEU134 4.6 26.4 1.0
HB A:VAL64 4.6 24.7 1.0
C16 A:XKU301 4.6 25.4 1.0
C A:PHE80 4.6 25.4 1.0
O A:HOH407 4.7 46.8 1.0
N10 A:XKU301 4.7 25.3 1.0
HA A:PHE82 4.7 24.6 1.0
CE2 A:PHE80 4.7 29.9 1.0
C9 A:XKU301 4.8 23.4 1.0
CG2 A:VAL64 4.8 26.7 1.0
HG13 A:VAL18 4.8 27.4 1.0
N A:GLU81 4.8 23.8 1.0
CB A:ALA144 4.8 28.4 1.0
CE1 A:PHE80 4.9 29.6 1.0
HA A:PHE80 4.9 26.4 1.0

Fluorine binding site 2 out of 3 in 8uv0

Go back to Fluorine Binding Sites List in 8uv0
Fluorine binding site 2 out of 3 in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:26.5
occ:1.00
F27 A:XKU301 0.0 26.5 1.0
C25 A:XKU301 1.4 24.2 1.0
F26 A:XKU301 2.2 27.1 1.0
F28 A:XKU301 2.2 25.8 1.0
C12 A:XKU301 2.4 22.3 1.0
H45 A:XKU301 2.6 25.8 1.0
HG13 A:VAL18 2.9 27.4 1.0
HB1 A:ALA31 3.0 25.3 1.0
C16 A:XKU301 3.1 25.4 1.0
C11 A:XKU301 3.1 24.6 1.0
HD2 A:PHE80 3.2 26.1 1.0
C15 A:XKU301 3.3 26.6 1.0
O A:HOH407 3.3 46.8 1.0
HB3 A:ALA31 3.3 25.4 1.0
HB2 A:PHE80 3.4 26.1 1.0
C13 A:XKU301 3.4 23.1 1.0
CD2 A:PHE80 3.5 26.9 1.0
CB A:ALA31 3.6 25.5 1.0
HG11 A:VAL18 3.6 28.7 1.0
CG1 A:VAL18 3.7 28.1 1.0
H44 A:XKU301 3.7 23.2 1.0
HG21 A:VAL18 3.8 28.1 1.0
CG A:PHE80 3.9 25.2 1.0
HB2 A:ALA31 4.0 25.2 1.0
CB A:PHE80 4.0 26.9 1.0
HB3 A:PHE80 4.1 25.8 1.0
CE2 A:PHE80 4.1 29.9 1.0
HG12 A:VAL18 4.2 28.0 1.0
N17 A:XKU301 4.3 28.2 1.0
HE2 A:PHE80 4.3 29.6 1.0
N10 A:XKU301 4.3 25.3 1.0
HB2 A:LYS33 4.4 27.8 1.0
CG2 A:VAL18 4.5 29.5 1.0
C19 A:XKU301 4.6 34.5 1.0
N14 A:XKU301 4.6 23.0 1.0
HB1 A:ALA144 4.6 28.2 1.0
HG23 A:VAL18 4.6 29.9 1.0
HG13 A:VAL64 4.6 28.4 1.0
H49 A:XKU301 4.7 34.4 1.0
HD2 A:LYS33 4.7 39.5 1.0
HD11 A:LEU134 4.7 25.6 1.0
CB A:VAL18 4.8 28.0 1.0
CD1 A:PHE80 4.8 27.1 1.0
HD13 A:ILE10 4.8 30.6 1.0
C9 A:XKU301 4.9 23.4 1.0
O A:ALA31 4.9 29.6 1.0
CA A:ALA31 4.9 26.4 1.0
CZ A:PHE80 5.0 30.8 1.0

Fluorine binding site 3 out of 3 in 8uv0

Go back to Fluorine Binding Sites List in 8uv0
Fluorine binding site 3 out of 3 in the Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:25.8
occ:1.00
F28 A:XKU301 0.0 25.8 1.0
C25 A:XKU301 1.3 24.2 1.0
F26 A:XKU301 2.1 27.1 1.0
F27 A:XKU301 2.2 26.5 1.0
C12 A:XKU301 2.3 22.3 1.0
H45 A:XKU301 2.4 25.8 1.0
HB1 A:ALA144 2.6 28.2 1.0
HD11 A:LEU134 3.0 25.6 1.0
C16 A:XKU301 3.0 25.4 1.0
C11 A:XKU301 3.0 24.6 1.0
HB2 A:ALA144 3.1 27.8 1.0
C15 A:XKU301 3.2 26.6 1.0
CB A:ALA144 3.3 28.4 1.0
C13 A:XKU301 3.4 23.1 1.0
HG13 A:VAL64 3.6 28.4 1.0
O A:HOH407 3.6 46.8 1.0
H44 A:XKU301 3.7 23.2 1.0
HB3 A:ALA144 3.8 27.3 1.0
CD1 A:LEU134 3.8 26.4 1.0
O A:HOH454 3.9 48.5 1.0
HD13 A:LEU134 4.0 26.0 1.0
HG21 A:VAL64 4.0 26.2 1.0
HD12 A:LEU134 4.1 26.4 1.0
N17 A:XKU301 4.2 28.2 1.0
OD2 A:ASP145 4.2 49.4 1.0
N10 A:XKU301 4.3 25.3 1.0
HG12 A:VAL64 4.3 30.7 1.0
CG1 A:VAL64 4.3 30.0 1.0
HA A:ALA144 4.4 25.0 1.0
CA A:ALA144 4.4 24.0 1.0
O29 A:XKU301 4.5 50.3 1.0
N14 A:XKU301 4.5 23.0 1.0
HB3 A:PHE80 4.5 25.8 1.0
C19 A:XKU301 4.6 34.5 1.0
HG13 A:VAL18 4.6 27.4 1.0
H A:ASP145 4.6 33.7 1.0
HB2 A:PHE80 4.6 26.1 1.0
HB A:VAL64 4.7 24.7 1.0
CG A:PHE80 4.7 25.2 1.0
H49 A:XKU301 4.8 34.4 1.0
CD2 A:PHE80 4.8 26.9 1.0
C9 A:XKU301 4.8 23.4 1.0
HB3 A:ALA31 4.8 25.4 1.0
HD2 A:PHE80 4.9 26.1 1.0
CB A:PHE80 4.9 26.9 1.0
CG2 A:VAL64 4.9 26.7 1.0
HB1 A:ALA31 4.9 25.3 1.0
HD23 A:LEU134 4.9 24.5 1.0
CB A:VAL64 4.9 24.4 1.0
HG A:LEU134 4.9 23.0 1.0

Reference:

J.R.Hummel, K.J.Xiao, J.C.Yang, L.B.Epling, K.Mukai, Q.Ye, M.Xu, D.Qian, L.Huo, M.Weber, V.Roman, Y.Lo, K.Drake, K.Stump, M.Covington, K.Kapilashrami, G.Zhang, M.Ye, S.Diamond, S.Yeleswaram, R.Macarron, M.C.Deller, S.Wee, S.Kim, X.Wang, L.Wu, W.Yao. Discovery of (4-Pyrazolyl)-2-Aminopyrimidines As Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2. J.Med.Chem. 2024.
ISSN: ISSN 0022-2623
PubMed: 38325398
DOI: 10.1021/ACS.JMEDCHEM.3C02287
Page generated: Sat Aug 3 01:12:24 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy