Fluorine in PDB 8v4y: Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1)

The structure of Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1) (pdb code 8v4y). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1), PDB code: 8v4y:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1) within 5.0Å range: probe atom residue distance (Å) B Occ W:F1103 b:25.0 occ:1.00 F1 W:BEF1103 0.0 25.0 1.0 BE W:BEF1103 1.8 32.3 1.0 HH22 W:ARG592 2.3 100.0 1.0 HH12 W:ARG592 2.3 100.0 1.0 HH22 W:ARG595 2.3 100.0 1.0 O3B W:ADP1101 2.8 27.5 1.0 HB3 W:MET207 2.8 100.0 1.0 H W:GLY208 2.9 100.0 1.0 HG2 W:MET207 3.0 100.0 1.0 NH2 W:ARG592 3.0 100.0 1.0 NH1 W:ARG592 3.0 100.0 1.0 F3 W:BEF1103 3.0 29.5 1.0 F2 W:BEF1103 3.0 45.3 1.0 NH2 W:ARG595 3.1 100.0 1.0 HH21 W:ARG595 3.3 100.0 1.0 CZ W:ARG592 3.4 100.0 1.0 CB W:MET207 3.6 100.0 1.0 HA W:MET207 3.7 100.0 1.0 HH21 W:ARG592 3.7 100.0 1.0 N W:GLY208 3.7 100.0 1.0 CG W:MET207 3.7 100.0 1.0 HH11 W:ARG592 3.7 100.0 1.0 PB W:ADP1101 4.0 25.1 1.0 HH12 W:ARG595 4.0 100.0 1.0 CA W:MET207 4.1 100.0 1.0 HG3 W:MET207 4.1 100.0 1.0 CZ W:ARG595 4.2 100.0 1.0 HA2 W:GLY565 4.3 100.0 1.0 H W:GLY565 4.3 100.0 1.0 C W:MET207 4.3 100.0 1.0 HB2 W:MET207 4.4 100.0 1.0 HA2 W:GLY208 4.4 100.0 1.0 O2B W:ADP1101 4.4 31.6 1.0 NH1 W:ARG595 4.4 100.0 1.0 O1B W:ADP1101 4.5 23.5 1.0 CA W:GLY208 4.7 100.0 1.0 NE W:ARG592 4.7 100.0 1.0 HB3 W:ASP591 4.9 100.0 1.0 CA W:GLY565 5.0 100.0 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1) within 5.0Å range: probe atom residue distance (Å) B Occ W:F1103 b:45.3 occ:1.00 F2 W:BEF1103 0.0 45.3 1.0 BE W:BEF1103 1.8 32.3 1.0 HZ3 W:LYS211 2.4 100.0 1.0 HZ1 W:LYS211 2.6 100.0 1.0 HA W:MET207 2.6 100.0 1.0 NZ W:LYS211 2.9 100.0 1.0 HG3 W:MET207 3.0 100.0 1.0 F3 W:BEF1103 3.0 29.5 1.0 F1 W:BEF1103 3.0 25.0 1.0 HG2 W:MET207 3.1 100.0 1.0 O1B W:ADP1101 3.1 23.5 1.0 HE3 W:LYS211 3.3 100.0 1.0 CG W:MET207 3.4 100.0 1.0 CA W:MET207 3.5 100.0 1.0 O3B W:ADP1101 3.6 27.5 1.0 CE W:LYS211 3.6 100.0 1.0 PB W:ADP1101 3.7 25.1 1.0 HZ2 W:LYS211 3.7 100.0 1.0 H W:GLY208 3.7 100.0 1.0 CB W:MET207 3.8 100.0 1.0 HB3 W:MET207 3.8 100.0 1.0 HE2 W:LYS211 3.9 100.0 1.0 HA3 W:GLY337 4.0 100.0 1.0 O2B W:ADP1101 4.1 31.6 1.0 H W:GLY337 4.1 100.0 1.0 N W:GLY208 4.3 100.0 1.0 N W:MET207 4.3 100.0 1.0 HH22 W:ARG592 4.3 100.0 1.0 C W:MET207 4.4 100.0 1.0 N W:GLY337 4.5 100.0 1.0 H W:MET207 4.6 100.0 1.0 CA W:GLY337 4.7 100.0 1.0 HB2 W:MET207 4.7 100.0 1.0 HG3 W:LYS211 4.8 100.0 1.0 HB2 W:LYS211 4.8 100.0 1.0 OE2 W:GLU309 4.8 100.0 1.0 O W:GLU206 4.9 100.0 1.0 O W:ASP205 4.9 100.0 1.0 C W:GLU206 4.9 100.0 1.0 CD W:LYS211 5.0 100.0 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Singly-Bound SNF2H-Nucleosome Complex with SNF2H at Inactive SHL2 (Conformation 1) within 5.0Å range: probe atom residue distance (Å) B Occ W:F1103 b:29.5 occ:1.00 F3 W:BEF1103 0.0 29.5 1.0 BE W:BEF1103 1.8 32.3 1.0 MG W:MG1102 2.9 25.8 1.0 O2B W:ADP1101 2.9 31.6 1.0 F2 W:BEF1103 3.0 45.3 1.0 F1 W:BEF1103 3.0 25.0 1.0 OE2 W:GLU309 3.1 100.0 1.0 HA2 W:GLY565 3.2 100.0 1.0 O3B W:ADP1101 3.5 27.5 1.0 PB W:ADP1101 3.5 25.1 1.0 HH12 W:ARG592 3.8 100.0 1.0 HZ1 W:LYS211 3.8 100.0 1.0 HZ3 W:LYS211 3.9 100.0 1.0 O1B W:ADP1101 4.1 23.5 1.0 H W:GLY565 4.1 100.0 1.0 CA W:GLY565 4.1 100.0 1.0 NZ W:LYS211 4.3 100.0 1.0 CD W:GLU309 4.3 100.0 1.0 HH22 W:ARG595 4.5 100.0 1.0 HH22 W:ARG592 4.5 100.0 1.0 HZ2 W:LYS211 4.5 100.0 1.0 HA3 W:GLY565 4.5 100.0 1.0 NH1 W:ARG592 4.6 100.0 1.0 N W:GLY565 4.6 100.0 1.0 O W:GLY565 4.6 100.0 1.0 OE1 W:GLU309 4.8 100.0 1.0 HG2 W:MET207 4.8 100.0 1.0 C W:GLY565 4.9 100.0 1.0 OD2 W:ASP308 4.9 100.0 1.0 OD1 W:ASP308 4.9 100.0 1.0 HH11 W:ARG592 5.0 100.0 1.0

U.S.Chio, E.Palovcak, A.A.A.Smith, H.Autzen, E.N.Munoz, Z.Yu, F.Wang, D.A.Agard, J.P.Armache, G.J.Narlikar, Y.Cheng. Functionalized Graphene-Oxide Grids Enable High-Resolution Cryo-Em Structures of the SNF2H-Nucleosome Complex Without Crosslinking. Nat Commun V. 15 2225 2024.
ISSN: ESSN 2041-1723
PubMed: 38472177
DOI: 10.1038/S41467-024-46178-Y