Fluorine in PDB 8vra: Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate

The binding sites of Fluorine atom in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate (pdb code 8vra). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate, PDB code: 8vra:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate within 5.0Å range: probe atom residue distance (Å) B Occ D:F301 b:20.0 occ:1.00 F1 D:MOV301 0.0 20.0 1.0 C4 D:MOV301 1.3 20.0 1.0 C5 D:MOV301 2.3 20.0 1.0 C3 D:MOV301 2.4 20.0 1.0 C6 D:MOV301 2.9 20.0 1.0 F2 D:MOV301 3.3 20.0 1.0 C30 D:MOV301 3.4 20.0 1.0 CA E:ALA103 3.5 22.9 1.0 N E:ALA103 3.5 22.9 1.0 N1 D:MOV301 3.6 20.0 1.0 C1 D:MOV301 3.6 20.0 1.0 C26 D:MOV301 3.8 20.0 1.0 C2 D:MOV301 4.0 20.0 1.0 CB E:ALA103 4.1 22.9 1.0 CB A:ALA158 4.2 25.3 1.0 O3 D:MOV301 4.2 20.0 1.0 C29 D:MOV301 4.5 20.0 1.0 OH D:TYR93 4.7 24.3 1.0 N E:ILE102 4.7 23.7 1.0 C E:TRP101 4.7 28.3 1.0 C E:ILE102 4.8 23.7 1.0 C E:ALA103 4.8 22.9 1.0 C7 D:MOV301 4.8 20.0 1.0 C27 D:MOV301 4.8 20.0 1.0 CA E:TRP101 4.9 28.3 1.0 N E:TRP101 4.9 28.3 1.0

Fluorine binding site 2 out of 2 in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate within 5.0Å range: probe atom residue distance (Å) B Occ D:F301 b:20.0 occ:1.00 F2 D:MOV301 0.0 20.0 1.0 C30 D:MOV301 1.4 20.0 1.0 C29 D:MOV301 2.3 20.0 1.0 C6 D:MOV301 2.4 20.0 1.0 C3 D:MOV301 2.8 20.0 1.0 NE2 E:HIS35 3.0 24.9 1.0 CA E:GLY99 3.2 25.9 1.0 C4 D:MOV301 3.2 20.0 1.0 F1 D:MOV301 3.3 20.0 1.0 OG E:SER33 3.6 27.8 1.0 N1 D:MOV301 3.6 20.0 1.0 C28 D:MOV301 3.6 20.0 1.0 C26 D:MOV301 3.6 20.0 1.0 CE1 E:HIS35 3.7 24.9 1.0 CB E:SER33 3.8 27.8 1.0 C E:GLY99 4.0 25.9 1.0 CD2 E:HIS35 4.1 24.9 1.0 C27 D:MOV301 4.1 20.0 1.0 N E:GLY99 4.3 25.9 1.0 C5 D:MOV301 4.3 20.0 1.0 C15 D:MOV301 4.4 20.0 1.0 O E:GLY99 4.5 25.9 1.0 C2 D:MOV301 4.5 20.0 1.0 N E:GLY100 4.6 27.6 1.0 O3 D:MOV301 4.7 20.0 1.0 C1 D:MOV301 4.9 20.0 1.0 ND1 E:HIS35 4.9 24.9 1.0

L.Maso, E.Rajak, I.Bang, A.Koide, T.Hattori, B.G.Neel, S.Koide. Molecular Basis For Antibody Recognition of Multiple Drug-Peptide/Mhc Complexes. Proc.Natl.Acad.Sci.Usa V. 121 29121 2024.
ISSN: ESSN 1091-6490
PubMed: 38781214
DOI: 10.1073/PNAS.2319029121